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    • Scientific topic
    • Data management207
    • Metadata management207
    • Research data management (RDM)207
    • Genome annotation195
    • Exomes176
    • Genomes176
    • Genomics176
    • Personal genomics176
    • Synthetic genomics176
    • Viral genomics176
    • Whole genomes176
    • Comparative transcriptomics169
    • Transcriptome169
    • Transcriptomics169
    • R151
    • R program151
    • R script151
    • FAIR data139
    • Findable, accessible, interoperable, reusable data139
    • Bayesian methods126
    • Biostatistics126
    • Descriptive statistics126
    • Gaussian processes126
    • Inferential statistics126
    • Markov processes126
    • Multivariate statistics126
    • Probabilistic graphical model126
    • Probability126
    • Statistics126
    • Statistics and probability126
    • MicroRNA sequencing115
    • RNA sequencing115
    • RNA-Seq115
    • RNA-Seq analysis115
    • Small RNA sequencing115
    • Small RNA-Seq115
    • Small-Seq115
    • Transcriptome profiling115
    • WTSS115
    • Whole transcriptome shotgun sequencing115
    • miRNA-seq115
    • Algorithms110
    • Computer programming110
    • Data structures110
    • Programming languages110
    • Software development110
    • Software engineering110
    • Active learning85
    • Chromosome walking85
    • Clone verification85
    • DNA-Seq85
    • DNase-Seq85
    • Ensembl learning85
    • High throughput sequencing85
    • High-throughput sequencing85
    • Kernel methods85
    • Knowledge representation85
    • Machine learning85
    • NGS85
    • NGS data analysis85
    • Neural networks85
    • Next gen sequencing85
    • Next generation sequencing85
    • Panels85
    • Primer walking85
    • Recommender system85
    • Reinforcement learning85
    • Sanger sequencing85
    • Sequencing85
    • Supervised learning85
    • Targeted next-generation sequencing panels85
    • Unsupervised learning85
    • Bioinformatics83
    • Python73
    • Python program73
    • Python script73
    • py73
    • Bottom-up proteomics71
    • Discovery proteomics71
    • MS-based targeted proteomics71
    • MS-based untargeted proteomics71
    • Metaproteomics71
    • Peptide identification71
    • Protein and peptide identification71
    • Proteomics71
    • Quantitative proteomics71
    • Targeted proteomics71
    • Top-down proteomics71
    • Metagenomics68
    • Shotgun metagenomics68
    • Single-cell genomics57
    • Single-cell sequencing57
    • Data rendering56
    • Data visualisation56
    • Antimicrobial stewardship50
    • Medical microbiology50
    • Microbial genetics50
    • Microbial physiology50
    • Microbial surveillance50
    • Microbiological surveillance50
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    • Operation
    • Data handling48
    • File handling48
    • File processing48
    • Processing48
    • Report handling48
    • Utility operation48
    • Data analysis13
    • Mathematical modelling11
    • Modelling and simulation11
    • Data extraction10
    • Data retrieval10
    • Data retrieval (metadata)10
    • Metadata retrieval10
    • Retrieval10
    • Data visualisation8
    • Molecular visualisation8
    • Plotting8
    • Rendering8
    • Visualisation8
    • Database retrieval7
    • Query7
    • Query and retrieval7
    • Data management planning4
    • Database search4
    • Normalisation4
    • Search4
    • Standardisation4
    • Standardisation and normalisation4
    • Data brokering3
    • Data deposition3
    • Data deposition brokering3
    • Data submission3
    • Database deposition3
    • Database submission3
    • Data formatting2
    • Data reformatting2
    • Design2
    • File format conversion2
    • File formatting2
    • File reformatting2
    • Format conversion2
    • Peptide database search2
    • Peptide identification2
    • Peptide-spectrum-matching2
    • Quality control2
    • RNA-Seq analysis2
    • Validation2
    • Alignment1
    • Alignment construction1
    • Alignment generation1
    • Allele calling1
    • Annotation1
    • Biological network analysis1
    • Biological network modelling1
    • Biological network prediction1
    • Classification1
    • Exome variant detection1
    • Expression analysis1
    • Expression data analysis1
    • Functional genome annotation1
    • Gene expression analysis1
    • Gene expression data analysis1
    • Gene expression regulation analysis1
    • Genome annotation1
    • Genome variant detection1
    • Germ line variant calling1
    • Image analysis1
    • Metagenome annotation1
    • Metagenomic inference1
    • Microarray data analysis1
    • Multiple alignment1
    • Multiple sequence alignment1
    • Mutation detection1
    • Network analysis1
    • Network comparison1
    • Network modelling1
    • Network prediction1
    • Network simulation1
    • Network topology simulation1
    • Ontology browsing1
    • Ontology visualisation1
    • Protein expression analysis1
    • Protein secondary structure visualisation1
    • RNA secondary structure visualisation1
    • Read pre-processing1
    • Sequence classification1
    • Sequence read pre-processing1
    • Somatic variant calling1
    • Structural genome annotation1
    • Structure rendering1
    • Structure visualisation1
    • Variant calling1
    • Variant mapping1
    • de novo mutation detection1
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    • Tool
    • Galaxy349
    • FastQC35
    • SAMtools26
    • MultiQC25
    • Bioconductor23
    • BWA21
    • REDCap20
    • Data Stewardship Wizard18
    • BEDTools17
    • fastp16
    • scikit-learn16
    • JBrowse15
    • SCANPY15
    • Cutadapt13
    • DeepTools13
    • Falco13
    • BLAST12
    • QUAST12
    • BUSCO11
    • ggplot211
    • GEMINI10
    • RStudio10
    • STAR10
    • taxonomy_krona_chart10
    • FreeBayes9
    • NanoPlot9
    • RDMkit9
    • Trimmomatic9
    • scikit-image9
    • Bandage8
    • FASTX-Toolkit8
    • Galaxy Image Analysis8
    • BCFtools7
    • BamTools7
    • Biopython7
    • HISAT27
    • msConvert7
    • seqtk7
    • Flye6
    • MAFFT6
    • MaxQuant6
    • Minimap26
    • Ontology Lookup Service6
    • Open Babel6
    • Trim Galore6
    • Unicycler6
    • Workflow4Metabolomics6
    • gffread6
    • BridgeDb5
    • COPASI5
    • DESeq25
    • European Nucleotide Archive (ENA)5
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • SRA Software Toolkit5
    • StringTie5
    • anndata5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • kraken25
    • xcms5
    • Bowtie 24
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • OMERO4
    • Salmon4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • bx-python4
    • mothur4
    • snpEff4
    • Apollo3
    • Bakta3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • QualiMap3
    • R3
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    • Standard database or policy
    • FAIRsharing4
    • NCBI Gene4
    • European Nucleotide Archive3
    • RDA DMP Common Standard for Machine-Actionable Data Management Plans3
    • Common Workflow Language2
    • DisProt2
    • Ensembl2
    • Minimum Information about Plant Phenotyping Experiment2
    • OBO Foundry2
    • Ontology Lookup Service2
    • PRoteomics IDEntifications database2
    • STRING: functional protein association networks2
    • Search Tool for Interactions of Chemicals2
    • The European Genome-phenome Archive2
    • eNanoMapper Ontology2
    • Wheat Data Interoperability Guidelines 1
    • BRENDA1
    • Bioschemas1
    • BridgeDb1
    • Cellosaurus1
    • Chemical Entities of Biological Interest1
    • Crop Ontology1
    • FAIR sharing1
    • FAIRtracks1
    • Genomics England | PanelApp1
    • HumanMine1
    • IUPAC International Chemical Identifier1
    • Identifiers.org Registry1
    • Integrated resource of protein families, domains and functional sites1
    • Investigation Study Assay JSON1
    • Investigation Study Assay Tabular1
    • MDL molfile Format1
    • ModelArchive1
    • Multi-Crop Passport Descriptors1
    • OMOP Common Data Model1
    • Observational Medical Outcomes Partnership Standard Vocabulary1
    • PRINTS1
    • Plant Phenotype Experiment Ontology1
    • Research Object Crate1
    • Resource Identification Portal 1
    • Schema.org1
    • Simplified Molecular Input Line Entry Specification Format1
    • Stress Knowledge Map1
    • The FAIR Principles1
    • The Human Metabolome Database1
    • UniProt Knowledgebase1
    • Wheat Trait Ontology1
    • Wikidata1
    • WorkflowHub1
    • Worldwide Protein Data Bank1
    • Zenodo 1
    • data.eNanoMapper.net1
    • i2b2-patient_visit_dimensions1
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    • Content provider
    • GTN766
    • Glittr.org744
    • European Bioinformatics Institute (EBI)462
    • ERGA Knowledge Hub119
    • GOBLET108
    • SIB Swiss Institute of Bioinformatics105
    • Australian BioCommons81
    • ELXIR-UK DaSH70
    • Software Carpentry70
    • DTLS - Dutch Techcentre For Life Sciences41
    • de.NBI35
    • Bioinformatics and Biomathematics Training Hub34
    • VIB Training34
    • Khan Academy Statistics32
    • BY-COVID31
    • IFB French Institute of Bioinformatics30
    • Bioconductor24
    • Canadian Bioinformatics Workshops24
    • Coding for Reproducible Research (CfRR)19
    • Coursera18
    • ELIXIR18
    • ELIXIR Portugal18
    • CINECA PROJECT17
    • ELIXIR Estonia12
    • PerMedCoE12
    • NBIS11
    • ELIXIR Norway10
    • VHP4Safety10
    • eNanoMapper10
    • Bioschemas9
    • CSC - IT Center for Science9
    • Data Carpentry9
    • NanoCommons9
    • Barcelona Supercomputing Center (BSC)8
    • Department of Bioinformatics - BiGCaT, Maastricht University8
    • InterMine7
    • BioData.pt6
    • Data Steward team Ghent University6
    • ELIXIR Luxembourg6
    • ELIXIR-SI eLearning Platform (EeLP)6
    • Centre for Genomic Regulation (CRG)5
    • ELIXIR Slovenia5
    • LIPID MAPS5
    • COG-Train4
    • ELIXIR: The Czech Republic Node4
    • Proteomics Academy4
    • University of Cambridge Bioinformatics Training4
    • Danish National Health Data Science Sandbox3
    • ELIXIR AAI3
    • Novo Nordisk Foundation Center for Protein Research3
    • Pattern Institute3
    • University of Edinburgh3
    • SciLifeLab2
    • Software Sustainability Institute2
    • The Carpentries2
    • Biomedical Sciences Research Center "Alexander Fleming"1
    • Centre for Digital Life Norway1
    • Cloud-SPAN1
    • EOSC4Cancer1
    • ExCALIBUR1
    • Fraunhofer FIT1
    • Future Learn1
    • Health-RI1
    • Open Science MOOC1
    • Seqera Labs1
    • UCLouvain Bioinformatics Platform1
    • UNIVERSE-HPC project1
    • VIB Conferences1
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    • proteomicsML1
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    • Keyword
    • R307
    • Transcriptomics141
    • Python137
    • Genomics126
    • RNA-seq106
    • Bioinformatics94
    • Data management93
    • Next generation sequencing92
    • Statistics76
    • FAIR data69
    • Galaxy Server administration68
    • Machine learning67
    • FAIR66
    • Data science64
    • Reproducibility60
    • Proteomics57
    • Single-cell sequencing57
    • jupyter-notebook55
    • Unix/Linux54
    • Workflows51
    • Foundations of Data Science50
    • Version control48
    • data management48
    • Data visualization47
    • Variant analysis45
    • biodiversity43
    • Single Cell41
    • Statistics and machine learning41
    • microgalaxy40
    • training38
    • General34
    • programming34
    • FAIR Data, Workflows, and Research33
    • Genome assembly32
    • Genome Annotation31
    • Genome annotation31
    • Nextflow30
    • Development in Galaxy29
    • Ecology28
    • Assembly27
    • Contributing to the Galaxy Training Material27
    • Data analysis27
    • Metagenomics27
    • Using Galaxy and Managing your Data27
    • Microbiome26
    • Rare Diseases & Research26
    • metagenomics26
    • RDM25
    • Epigenetics24
    • Metadata22
    • data stewardship22
    • Containerization21
    • ansible21
    • ChIP-seq20
    • Docker20
    • Long read sequencing20
    • reproducible research20
    • sensitive data19
    • CfRR19
    • FAIR Data19
    • Galaxy19
    • High performance computing19
    • REDCap19
    • Shiny19
    • Spatial transcriptomics19
    • git-gat19
    • interactive-tools19
    • life-sciences19
    • metadata19
    • scientific computing19
    • Cloud computing18
    • Programming18
    • Variant Analysis18
    • Climate17
    • Sequence analysis17
    • Teaching and Hosting Galaxy training17
    • elixir17
    • work-in-progress17
    • Data reuse16
    • Metabolomics16
    • Microbiology16
    • Roslin Institute16
    • Shell16
    • fair16
    • jbrowse116
    • Imaging15
    • Introduction to Galaxy Analyses15
    • Julia15
    • bioinformatics15
    • data visualisation15
    • earth-system15
    • prokaryote15
    • ATAC-seq14
    • Artificial intelligence14
    • Data mining14
    • Online Repository14
    • Quarto14
    • gmod14
    • transcriptomics14
    • Data management planning13
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    • Difficulty level
    • Not specified2132
    • Beginner876
    • Intermediate249
    • Advanced46
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    • Licence
    • License Not Specified1666
    • Creative Commons Attribution 4.0 International1155
    • Creative Commons Attribution Share Alike 4.0 International141
    • MIT License107
    • GNU General Public License v3.0 only43
    • Creative Commons Zero v1.0 Universal40
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International35
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International24
    • Apache License 2.017
    • Other (Not Open)16
    • BSD 3-Clause "New" or "Revised" License14
    • Other (Non-Commercial)14
    • Creative Commons Attribution Non Commercial 4.0 International10
    • Creative Commons Attribution 1.0 Generic5
    • Creative Commons Attribution No Derivatives 4.0 International3
    • Artistic License 2.02
    • GNU Affero General Public License v3.0 only2
    • GNU General Public License v2.0 only2
    • Creative Commons Attribution 2.0 Generic1
    • Creative Commons Attribution No Derivatives 2.0 Generic1
    • Creative Commons Attribution Non Commercial 2.0 Generic1
    • Do What The F*ck You Want To Public License1
    • Open Data Commons Attribution License v1.01
    • Other (Open)1
    • The Unlicense1
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    • Target audience
    • Students542
    • PhD students147
    • Clinicians116
    • Galaxy Administrators97
    • Researchers71
    • Instructors52
    • Biologists45
    • Novice44
    • Life Science Researchers43
    • bioinformaticians35
    • Bioinformaticians33
    • Intermediate26
    • PhD candidate26
    • Scientific community26
    • PhD candidates23
    • Biologists, Genomicists, Computer Scientists22
    • Scientists21
    • post-docs20
    • Data Managers19
    • Bench biologists18
    • Academia/ Research Institution17
    • Industry17
    • Non-Profit Organisation17
    • Beginners16
    • Data Scientists16
    • Post-Doctoral Fellows16
    • Trainers16
    • life scientists16
    • Graduate Students15
    • Healthcare15
    • beginner bioinformaticians15
    • PhD Students14
    • biologists14
    • Researcher in life sciences13
    • Research Scientists12
    • Biomedical Researchers11
    • Computational biologists11
    • Master students11
    • data stewards11
    • software developers, bioinformaticians11
    • health professionals10
    • Researcher10
    • biocurators10
    • Biomedical researchers9
    • Training Designers9
    • Training instructors9
    • healthcare professionals8
    • Beginner7
    • Bioinformatician7
    • Health Care Professionals7
    • Life Scientists7
    • Life scientists7
    • PhD7
    • modelers7
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    • Graduate students6
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    • Post Docs6
    • rare disease patients representatives5
    • Chemists5
    • Clinical Scientists5
    • General Interest5
    • PI5
    • Undergraduate students5
    • computational scientists5
    • data managers5
    • postgrad5
    • project manager5
    • Anyone wishing to use bioinformatics resources to find basic information about a virus.4
    • Biologists with little or no prior computational experience4
    • Curators4
    • Laboratory technicians4
    • Life scientists with programming skills4
    • PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
    • Veterinarians4
    • plant researchers4
    • postdocs4
    • researchers4
    • Bioinformatician, Bioanalysts3
    • Data Steward3
    • Database users3
    • Ontologists3
    • Postgraduate students3
    • Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
    • Technicians3
    • data steward / data manager3
    • geneticists3
    • life science researchers3
    • postdoc3
    • postdoctoral researchers3
    • programmers3
    • software engineers3
    • teachers3
    • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
    • Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
    • Beginner informatics2
    • Bioinformaticians, Biologists with little or no prior computational experience.2
    • Data Manager2
    • Developers2
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    • Author
    • Helena Rasche127
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    • Simon Gladman33
    • Anthony Bretaudeau28
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    • Nate Coraor27
    • Subina Mehta27
    • The Gulbenkian Training Programme in Bioinformatics27
    • bebatut27
    • Yvan Le Bras26
    • Donat Agosti25
    • Julia Giora25
    • Nicola Soranzo25
    • Plazi Verein25
    • Teaching materials at the Harvard Chan Bioinformatics Core25
    • bgruening25
    • Saskia Lawson-Tovey24
    • The Carpentries23
    • Fotis E. Psomopoulos21
    • Michelle Brazas21
    • Egon Willighagen20
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
    • Anne Fouilloux19
    • Coding for Reproducible Research Initiative19
    • Marie Josse19
    • Wendi Bacon19
    • Bazante Sanders18
    • Katarzyna Kamieniecka18
    • Krzysztof Poterlowicz18
    • Laura Cooper18
    • Terri Attwood18
    • UC Davis Bioinformatics Core Training Page18
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    • posit::conf(2024)17
    • Data Carpentry16
    • Paul Zierep16
    • Cristóbal Gallardo15
    • Martin Morgan15
    • Wandrille Duchemin15
    • Maria Doyle14
    • Mijke Jetten14
    • Pratik Jagtap14
    • Samaha, Georgina (orcid: 0000-0003-0419-1476)14
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    • bioinformatics.ca14
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    • Pavankumar Videm11
    • Canadian Bioinformatics Workshops10
    • Daniel Blankenberg10
    • Fred Hutch Data Science Lab10
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    • Martin Čech10
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    • Lucille Delisle9
    • Praveen Kumar9
    • allegra.via Via9
    • rstudio::conf(2022)9
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    • Anne Pajon8
    • AstraZeneca8
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    • Diana Pilvar8
    • Emma Leith8
    • Gildas Le Corguillé8
    • Helen Brown8
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    • Wendi Bacon77
    • Nate Coraor70
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    • Armin Dadras62
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    • Robert Andrews55
    • Simon Gladman53
    • The Carpentries Incubator51
    • Teresa Müller48
    • Lucille Delisle46
    • Mehmet Tekman46
    • Beatriz Serrano-Solano43
    • Munazah Andrabi43
    • Yvan Le Bras42
    • Pavankumar Videm39
    • SIB Swiss Institute of Bioinformatics36
    • Wolfgang Maier36
    • Melanie Föll35
    • Subina Mehta33
    • Anup Kumar28
    • Simon Bray28
    • Teaching materials at the Harvard Chan Bioinformatics Core25
    • Anne Fouilloux24
    • Donny Vrins24
    • Maria Doyle23
    • Peter van Heusden23
    • Julia Jakiela20
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
    • Bazante Sanders19
    • Anton Nekrutenko18
    • Marie Josse18
    • Tristan Reynolds18
    • UC Davis Bioinformatics Core Training Page18
    • Deepti Varshney17
    • Khaled Jum'ah17
    • Paul Zierep17
    • posit::conf(2024)17
    • Data Carpentry16
    • Pratik Jagtap16
    • Leonid Kostrykin15
    • David López14
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    • bioinformatics.ca14
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    • Sundeep Agarwal8
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    • Bioinformatics, Rockefeller University7
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3303 materials found
  • bioinfocz/Course-on-scRNA-seq-data-analysis

    ELIXIR node event
    Sequencing RNA-Seq Single-cell sequencing Transcriptomics R Next generation sequencing RNA-seq
  • Recorded webinar

    Using UniProt for protein structure-function analysis

    ELIXIR node event
  • NFDI4BIOIMAGE/training

    ELIXIR node event
    Image analysis Data management FAIR data
  • Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

    ELIXIR node event
    • beginner
    functional genomics,genes and genomes,next generation sequencing,transcriptomics,training functional genomics,genes and genomes,next generation sequencing,transcriptomics,training,torsten schwede & thierry sengstag group
  • e-learning

    Galaxy Tabular Learner - Building a Model using Chowell clinical data

    •• intermediate
    Statistics and probability LORIS Score Model Machine Learning Statistics and machine learning Tabular Learner
  • exercise, slides, tutorial

    Reproducible Research: Essentials for Managing Your Data

  • robinsonlabuzh/pasta

    ELIXIR node event
    Statistics and probability R Spatial transcriptomics Statistics
  • WORKSHOP: Spatial omics

    Bioinformatics Analysis Spatial omics
  • hands-on tutorial

    R introduction

    ELIXIR node event
    • beginner
    R script Software engineering data visualisation programming
  • online tutorial

    Introduction to Single Cell ATAC-seq

    ELIXIR node event
    • beginner
    ATAC-seq ArchR
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