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    • Scientific topic
    • Data management191
    • Metadata management191
    • Research data management (RDM)191
    • Genome annotation189
    • Exomes173
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    • Personal genomics173
    • Synthetic genomics173
    • Viral genomics173
    • Whole genomes173
    • Comparative transcriptomics165
    • Transcriptome165
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    • R145
    • R program145
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    • FAIR data137
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    • Bayesian methods123
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    • Inferential statistics123
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    • Multivariate statistics123
    • Probabilistic graphical model123
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    • Statistics and probability123
    • MicroRNA sequencing112
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    • RNA-Seq112
    • RNA-Seq analysis112
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    • Small RNA-Seq112
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    • Transcriptome profiling112
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    • Algorithms102
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    • Chromosome walking78
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    • Bottom-up proteomics71
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    • Python71
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    • py71
    • Metagenomics66
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    • Data rendering55
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    • Operation
    • Data handling48
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    • Data analysis13
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    • Database search4
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    • Data brokering3
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    • Annotation2
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    • Design2
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    • Peptide database search2
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    • Quality control2
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    • Alignment1
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    • Biological network analysis1
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    • Classification1
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    • Exome variant detection1
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    • Functional genome annotation1
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    • Genome annotation1
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    • Image analysis1
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    • Ontology browsing1
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    • Protein expression analysis1
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    • Read pre-processing1
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    • Sequence read pre-processing1
    • Somatic variant calling1
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    • Structure rendering1
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    • Tool
    • Galaxy346
    • FastQC34
    • SAMtools28
    • MultiQC26
    • Bioconductor23
    • BWA20
    • REDCap20
    • fastp19
    • BEDTools17
    • Data Stewardship Wizard16
    • scikit-learn16
    • JBrowse15
    • SCANPY15
    • Cutadapt14
    • DeepTools13
    • BLAST12
    • Falco11
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    • ggplot211
    • BUSCO10
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    • RStudio10
    • taxonomy_krona_chart10
    • FreeBayes9
    • NanoPlot9
    • Trimmomatic9
    • scikit-image9
    • FASTX-Toolkit8
    • Galaxy Image Analysis8
    • RDMkit8
    • kraken28
    • BCFtools7
    • BamTools7
    • Biopython7
    • HISAT27
    • msConvert7
    • seqtk7
    • Bandage6
    • Bowtie 26
    • MAFFT6
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    • Minimap26
    • Ontology Lookup Service6
    • Open Babel6
    • Trim Galore6
    • Workflow4Metabolomics6
    • gffread6
    • COPASI5
    • DESeq25
    • European Nucleotide Archive (ENA)5
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
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    • compute_sequence_length5
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    • BridgeDb4
    • Bwa-mem24
    • Chipster4
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    • GOseq4
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    • Newick Utilities4
    • OMERO4
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    • Salmon4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • anndata4
    • bx-python4
    • mothur4
    • pyGenomeTracks4
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    • Apollo3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
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    • Standard database or policy
    • FAIRsharing4
    • NCBI Gene4
    • European Nucleotide Archive3
    • RDA DMP Common Standard for Machine-Actionable Data Management Plans3
    • Common Workflow Language2
    • DisProt2
    • Ensembl2
    • Minimum Information about Plant Phenotyping Experiment2
    • OBO Foundry2
    • Ontology Lookup Service2
    • PRoteomics IDEntifications database2
    • STRING: functional protein association networks2
    • Search Tool for Interactions of Chemicals2
    • The European Genome-phenome Archive2
    • eNanoMapper Ontology2
    • Wheat Data Interoperability Guidelines 1
    • BRENDA1
    • Bioschemas1
    • BridgeDb1
    • Cellosaurus1
    • Chemical Entities of Biological Interest1
    • Crop Ontology1
    • FAIR sharing1
    • FAIRtracks1
    • Gene3D1
    • Genomics England | PanelApp1
    • HumanMine1
    • IUPAC International Chemical Identifier1
    • Identifiers.org Registry1
    • Integrated resource of protein families, domains and functional sites1
    • Investigation Study Assay JSON1
    • Investigation Study Assay Tabular1
    • MDL molfile Format1
    • ModelArchive1
    • Multi-Crop Passport Descriptors1
    • OMOP Common Data Model1
    • Observational Medical Outcomes Partnership Standard Vocabulary1
    • PRINTS1
    • Plant Phenotype Experiment Ontology1
    • Research Object Crate1
    • Resource Identification Portal 1
    • SUPERFAMILY1
    • Schema.org1
    • Simplified Molecular Input Line Entry Specification Format1
    • Stress Knowledge Map1
    • Structural Classification Of Proteins1
    • The FAIR Principles1
    • The Human Metabolome Database1
    • UniProt Knowledgebase1
    • Wheat Trait Ontology1
    • Wikidata1
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    • Worldwide Protein Data Bank1
    • Zenodo 1
    • data.eNanoMapper.net1
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    • GTN757
    • Glittr.org714
    • European Bioinformatics Institute (EBI)443
    • ERGA Knowledge Hub118
    • GOBLET108
    • SIB Swiss Institute of Bioinformatics100
    • Australian BioCommons75
    • ELXIR-UK DaSH70
    • Software Carpentry70
    • DTLS - Dutch Techcentre For Life Sciences41
    • de.NBI35
    • Bioinformatics and Biomathematics Training Hub34
    • Khan Academy Statistics32
    • BY-COVID31
    • IFB French Institute of Bioinformatics29
    • VIB Training27
    • Bioconductor24
    • Coursera18
    • ELIXIR18
    • ELIXIR Portugal18
    • CINECA PROJECT17
    • ELIXIR Estonia12
    • PerMedCoE12
    • NBIS11
    • ELIXIR Norway10
    • eNanoMapper10
    • Bioschemas9
    • CSC - IT Center for Science9
    • Data Carpentry9
    • NanoCommons9
    • Barcelona Supercomputing Center (BSC)8
    • Department of Bioinformatics - BiGCaT, Maastricht University8
    • Genome 3D8
    • InterMine7
    • Data Steward team Ghent University6
    • ELIXIR Luxembourg6
    • ELIXIR-SI eLearning Platform (EeLP)6
    • BioData.pt5
    • ELIXIR Slovenia5
    • LIPID MAPS5
    • UNIVERSE-HPC project5
    • COG-Train4
    • Centre for Genomic Regulation (CRG)4
    • Proteomics Academy4
    • University of Cambridge Bioinformatics Training4
    • Danish National Health Data Science Sandbox3
    • ELIXIR AAI3
    • ELIXIR: The Czech Republic Node3
    • Novo Nordisk Foundation Center for Protein Research3
    • Pattern Institute3
    • VHP4Safety3
    • SciLifeLab2
    • Software Sustainability Institute2
    • The Carpentries2
    • University of Edinburgh2
    • Biomedical Sciences Research Center "Alexander Fleming"1
    • Centre for Digital Life Norway1
    • Cloud-SPAN1
    • EOSC4Cancer1
    • ExCALIBUR1
    • Fraunhofer FIT1
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    • Keyword
    • R299
    • Transcriptomics138
    • Python134
    • Genomics125
    • RNA-seq103
    • Bioinformatics88
    • Data management87
    • Next generation sequencing85
    • Statistics74
    • Galaxy Server administration68
    • FAIR data67
    • Machine learning67
    • FAIR66
    • Data science62
    • Reproducibility58
    • Proteomics57
    • Single-cell sequencing55
    • jupyter-notebook55
    • Workflows51
    • Foundations of Data Science50
    • Unix/Linux50
    • data management50
    • Data visualization46
    • biodiversity42
    • Single Cell41
    • Variant analysis41
    • Statistics and machine learning40
    • microgalaxy39
    • training37
    • Version control36
    • General34
    • Genome Annotation31
    • FAIR Data, Workflows, and Research29
    • Development in Galaxy28
    • Genome annotation28
    • Genome assembly28
    • Contributing to the Galaxy Training Material27
    • Data analysis27
    • Ecology27
    • Metagenomics27
    • Nextflow27
    • Rare Diseases & Research27
    • Using Galaxy and Managing your Data27
    • Assembly26
    • RDM25
    • Epigenetics24
    • Microbiome24
    • metagenomics23
    • data stewardship22
    • Containerization21
    • ansible21
    • ChIP-seq20
    • Docker20
    • Shiny20
    • sensitive data19
    • Long read sequencing19
    • Metadata19
    • REDCap19
    • git-gat19
    • interactive-tools19
    • life-sciences19
    • metadata19
    • Cloud computing18
    • FAIR Data18
    • Programming18
    • Variant Analysis18
    • Climate17
    • Galaxy17
    • High performance computing17
    • Imaging17
    • Sequence analysis17
    • Teaching and Hosting Galaxy training17
    • elixir17
    • work-in-progress17
    • Data reuse16
    • Metabolomics16
    • Roslin Institute16
    • Shell16
    • Spatial transcriptomics16
    • jbrowse116
    • Artificial intelligence15
    • Julia15
    • earth-system15
    • fair15
    • prokaryote15
    • Data mining14
    • Introduction to Galaxy Analyses14
    • Online Repository14
    • gmod14
    • transcriptomics14
    • Data management planning13
    • Babraham Institute13
    • Comparative genomics13
    • EeLP13
    • Enrichment analysis13
    • Europe PMC13
    • Git13
    • NGS13
    • Ontologies13
    • Phylogenetics13
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    • Difficulty level
    • Not specified2178
    • Beginner862
    • Intermediate239
    • Advanced45
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    • Licence
    • License Not Specified1775
    • Creative Commons Attribution 4.0 International1082
    • Creative Commons Attribution Share Alike 4.0 International133
    • MIT License105
    • Creative Commons Zero v1.0 Universal39
    • GNU General Public License v3.0 only39
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International35
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International24
    • Apache License 2.017
    • Other (Not Open)16
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    • Creative Commons Attribution Non Commercial 4.0 International10
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    • Creative Commons Attribution No Derivatives 4.0 International3
    • Artistic License 2.02
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    • GNU General Public License v2.0 only2
    • Academic Free License v3.01
    • Creative Commons Attribution 2.0 Generic1
    • Creative Commons Attribution No Derivatives 2.0 Generic1
    • Creative Commons Attribution Non Commercial 2.0 Generic1
    • Do What The F*ck You Want To Public License1
    • Open Data Commons Attribution License v1.01
    • Other (Open)1
    • The Unlicense1
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    • Target audience
    • Students534
    • Researchers217
    • Biologists, Genomicists, Computer Scientists170
    • Post-Doctoral Fellows164
    • PhD students145
    • Clinicians114
    • Galaxy Administrators96
    • Graduate students87
    • Graduate Students80
    • Instructors52
    • Biologists44
    • Novice44
    • Life Science Researchers43
    • bioinformaticians35
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    • PhD candidates23
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    • Healthcare15
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    • data stewards11
    • software developers, bioinformaticians11
    • health professionals10
    • Master students10
    • biocurators10
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    • Training Designers9
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    • postgrad5
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    • Anyone wishing to use bioinformatics resources to find basic information about a virus.4
    • Curators4
    • Laboratory technicians4
    • Life scientists with programming skills4
    • PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
    • Veterinarians4
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    • Bioinformatician, Bioanalysts3
    • Biologists with little or no prior computational experience3
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    • Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
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    • geneticists3
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    • research software engineers and researchers writing code3
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    • teachers3
    • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
    • Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
    • Beginner informatics2
    • Bioinformaticians, Biologists with little or no prior computational experience.2
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    • Author
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    • Teaching materials at the Harvard Chan Bioinformatics Core25
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    • bgruening25
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    • The Carpentries23
    • Fotis E. Psomopoulos21
    • Michelle Brazas21
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
    • Anne Fouilloux19
    • Egon Willighagen19
    • Marie Josse19
    • Wendi Bacon19
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    • Laura Cooper18
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    • Donny Vrins13
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    • allegra.via Via9
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    • AstraZeneca8
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    • Emma Leith8
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    • The Carpentries Incubator48
    • Mehmet Tekman46
    • Lucille Delisle44
    • Teresa Müller44
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    • Yvan Le Bras40
    • Pavankumar Videm39
    • Wolfgang Maier36
    • Melanie Föll35
    • Beatriz Serrano-Solano34
    • SIB Swiss Institute of Bioinformatics33
    • Subina Mehta33
    • Simon Bray28
    • Anup Kumar27
    • Teaching materials at the Harvard Chan Bioinformatics Core25
    • Anne Fouilloux24
    • Donny Vrins24
    • Maria Doyle23
    • Peter van Heusden23
    • Julia Jakiela20
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
    • Bazante Sanders19
    • Anton Nekrutenko18
    • UC Davis Bioinformatics Core Training Page18
    • Khaled Jum'ah17
    • posit::conf(2024)17
    • Data Carpentry16
    • Deepti Varshney16
    • Pratik Jagtap16
    • Marie Josse14
    • Mélanie Petera14
    • bioinformatics.ca14
    • CRUK CI Bioinformatics Core13
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    • Bioinformatics, Rockefeller University7
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  • Introduction to pangenomes and why they are worth exploring | EMBL-EBI Training

    ELIXIR node event
    Pangenomes
  • filonico/UNIX_and_bash_basics

    ELIXIR node event
    Unix/Linux
  • MolSSI-Education/oop_and_design_patterns

    ELIXIR node event
    Python script Python
  • sib-swiss/llm-biodata-training

    ELIXIR node event
    Python script Python Artificial intelligence Large language models
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    ELIXIR node event
    OpenMP
  • MolSSI-Education/getting-started-computational-chemistry

    ELIXIR node event
    Python script Python Unix/Linux
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    ELIXIR node event
    Python script Python
  • Recorded webinar

    Evolution of the accessory genome

    ELIXIR node event
  • e-learning

    Navigating the AlphaFold database: Quick tour

    ELIXIR node event
    Protein folds and structural domains alphafold database alphafold predicted structures
  • e-learning

    Creation of the labs in the different Galaxy instances for your community

    • beginner
    CoDex Community Galaxy Community Building SIG
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