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    • Scientific topic
    • Data management181
    • Metadata management181
    • Research data management (RDM)181
    • Comparative transcriptomics154
    • Transcriptome154
    • Transcriptomics154
    • R143
    • R program143
    • R script143
    • FAIR data128
    • Findable, accessible, interoperable, reusable data128
    • Bayesian methods114
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    • Descriptive statistics114
    • Gaussian processes114
    • Inferential statistics114
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    • Probability114
    • Statistics114
    • Statistics and probability114
    • Genome annotation110
    • Exomes107
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    • Genomics107
    • Personal genomics107
    • Synthetic genomics107
    • Viral genomics107
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    • Algorithms99
    • Computer programming99
    • Data structures99
    • MicroRNA sequencing99
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    • RNA sequencing99
    • RNA-Seq99
    • RNA-Seq analysis99
    • Small RNA sequencing99
    • Small RNA-Seq99
    • Small-Seq99
    • Software development99
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    • Active learning79
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    • Machine learning79
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    • Reinforcement learning79
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    • Unsupervised learning79
    • Bioinformatics78
    • Chromosome walking73
    • Clone verification73
    • DNA-Seq73
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    • NGS73
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    • Panels73
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    • Metagenomics69
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    • Python66
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    • Python script66
    • py66
    • Bottom-up proteomics65
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    • Metaproteomics65
    • Peptide identification65
    • Protein and peptide identification65
    • Proteomics65
    • Quantitative proteomics65
    • Targeted proteomics65
    • Top-down proteomics65
    • Data rendering54
    • Data visualisation54
    • Single-cell genomics52
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    • Antimicrobial stewardship44
    • Community analysis44
    • Environmental microbiology44
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    • Operation
    • Data handling48
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    • Processing48
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    • Data analysis13
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    • Data extraction10
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    • Molecular visualisation9
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    • Database retrieval7
    • Query7
    • Query and retrieval7
    • Database search4
    • Normalisation4
    • Search4
    • Standardisation4
    • Standardisation and normalisation4
    • Data brokering3
    • Data deposition3
    • Data deposition brokering3
    • Data submission3
    • Database deposition3
    • Database submission3
    • Annotation2
    • Data formatting2
    • Data management planning2
    • Data reformatting2
    • Design2
    • File format conversion2
    • File formatting2
    • File reformatting2
    • Format conversion2
    • Quality control2
    • RNA-Seq analysis2
    • Validation2
    • Alignment1
    • Alignment construction1
    • Alignment generation1
    • Allele calling1
    • Biological network analysis1
    • Biological network modelling1
    • Biological network prediction1
    • Classification1
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    • Exome variant detection1
    • Expression analysis1
    • Expression data analysis1
    • Functional genome annotation1
    • Gene expression analysis1
    • Gene expression data analysis1
    • Gene expression regulation analysis1
    • Genome annotation1
    • Genome variant detection1
    • Germ line variant calling1
    • Image analysis1
    • Metagenome annotation1
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    • Multiple alignment1
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    • Network analysis1
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    • Ontology browsing1
    • Ontology visualisation1
    • Protein expression analysis1
    • Protein secondary structure visualisation1
    • RNA secondary structure visualisation1
    • Read pre-processing1
    • Sequence classification1
    • Sequence read pre-processing1
    • Somatic variant calling1
    • Structural genome annotation1
    • Structure rendering1
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    • Variant calling1
    • Variant mapping1
    • de novo mutation detection1
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    • Tool
    • Galaxy328
    • FastQC33
    • SAMtools28
    • Bioconductor23
    • MultiQC22
    • BWA20
    • REDCap20
    • fastp17
    • BEDTools16
    • Data Stewardship Wizard16
    • scikit-learn16
    • SCANPY15
    • Cutadapt14
    • JBrowse14
    • DeepTools13
    • BLAST11
    • QUAST11
    • GEMINI10
    • RStudio10
    • STAR10
    • BUSCO9
    • FreeBayes9
    • NanoPlot9
    • ggplot29
    • taxonomy_krona_chart9
    • Falco8
    • RDMkit8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • Biopython7
    • HISAT27
    • msConvert7
    • seqtk7
    • Bandage6
    • FASTX-Toolkit6
    • Galaxy Image Analysis6
    • MAFFT6
    • MaxQuant6
    • Minimap26
    • Ontology Lookup Service6
    • Open Babel6
    • Workflow4Metabolomics6
    • scikit-image6
    • Bowtie 25
    • COPASI5
    • European Nucleotide Archive (ENA)5
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • Unicycler5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • gffread5
    • xcms5
    • BridgeDb4
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • HUMAnN24
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • OMERO4
    • SRA Software Toolkit4
    • Salmon4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GOseq3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • QualiMap3
    • RDKit3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
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    • Standard database or policy
    • FAIRsharing4
    • NCBI Gene4
    • European Nucleotide Archive3
    • RDA DMP Common Standard for Machine-Actionable Data Management Plans3
    • DisProt2
    • Ensembl2
    • Minimum Information about Plant Phenotyping Experiment2
    • OBO Foundry2
    • Ontology Lookup Service2
    • STRING: functional protein association networks2
    • Search Tool for Interactions of Chemicals2
    • eNanoMapper Ontology2
    • Wheat Data Interoperability Guidelines 1
    • BRENDA1
    • Bioschemas1
    • BridgeDb1
    • Chemical Entities of Biological Interest1
    • Common Workflow Language1
    • Crop Ontology1
    • FAIR sharing1
    • FAIRtracks1
    • Gene3D1
    • Genomics England | PanelApp1
    • HumanMine1
    • IUPAC International Chemical Identifier1
    • Identifiers.org Registry1
    • Integrated resource of protein families, domains and functional sites1
    • MDL molfile Format1
    • Multi-Crop Passport Descriptors1
    • OMOP Common Data Model1
    • Observational Medical Outcomes Partnership Standard Vocabulary1
    • PRINTS1
    • Plant Phenotype Experiment Ontology1
    • Resource Identification Portal 1
    • SUPERFAMILY1
    • Schema.org1
    • Simplified Molecular Input Line Entry Specification Format1
    • Stress Knowledge Map1
    • Structural Classification Of Proteins1
    • The European Genome-phenome Archive1
    • The FAIR Principles1
    • The Human Metabolome Database1
    • Wheat Trait Ontology1
    • Wikidata1
    • data.eNanoMapper.net1
    • i2b2-patient_visit_dimensions1
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    • Content provider
    • GTN735
    • Glittr.org695
    • European Bioinformatics Institute (EBI)425
    • GOBLET108
    • SIB Swiss Institute of Bioinformatics94
    • ELXIR-UK DaSH70
    • Australian BioCommons65
    • DTLS - Dutch Techcentre For Life Sciences41
    • de.NBI35
    • Bioinformatics and Biomathematics Training Hub34
    • Khan Academy Statistics32
    • BY-COVID31
    • IFB French Institute of Bioinformatics29
    • VIB Training27
    • Software Carpentry25
    • Bioconductor24
    • Coursera18
    • ELIXIR Portugal18
    • CINECA PROJECT17
    • ELIXIR17
    • PerMedCoE12
    • NBIS11
    • CSC - IT Center for Science10
    • ELIXIR Norway10
    • eNanoMapper10
    • Bioschemas9
    • Data Carpentry9
    • ELIXIR Estonia9
    • NanoCommons9
    • Barcelona Supercomputing Center (BSC)8
    • Department of Bioinformatics - BiGCaT, Maastricht University8
    • Genome 3D8
    • InterMine7
    • Data Steward team Ghent University6
    • ELIXIR Luxembourg6
    • ELIXIR-SI eLearning Platform (EeLP)6
    • BioData.pt5
    • ELIXIR Slovenia5
    • LIPID MAPS5
    • UNIVERSE-HPC project5
    • COG-Train4
    • Centre for Genomic Regulation (CRG)4
    • Proteomics Academy4
    • University of Cambridge Bioinformatics Training4
    • Danish National Health Data Science Sandbox3
    • ELIXIR AAI3
    • ELIXIR: The Czech Republic Node3
    • Novo Nordisk Foundation Center for Protein Research3
    • VHP4Safety3
    • Software Sustainability Institute2
    • The Carpentries2
    • University of Edinburgh2
    • Biomedical Sciences Research Center "Alexander Fleming"1
    • Centre for Digital Life Norway1
    • Cloud-SPAN1
    • EOSC4Cancer1
    • ExCALIBUR1
    • Fraunhofer FIT1
    • Future Learn1
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    • VIB Conferences1
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    • Keyword
    • R293
    • Transcriptomics129
    • Python125
    • RNA-seq90
    • Genomics84
    • Bioinformatics82
    • Data management73
    • Statistics69
    • Galaxy Server administration68
    • Next generation sequencing67
    • Machine learning63
    • FAIR61
    • Data science59
    • jupyter-notebook55
    • FAIR data54
    • Single-cell sequencing52
    • Foundations of Data Science51
    • Proteomics51
    • Reproducibility51
    • data management50
    • Workflows48
    • Data visualization44
    • Single Cell41
    • Unix/Linux40
    • microgalaxy39
    • Statistics and machine learning36
    • training36
    • Version control35
    • General33
    • Variant analysis32
    • Genome Annotation30
    • FAIR Data, Workflows, and Research29
    • Development in Galaxy28
    • Assembly27
    • Contributing to the Galaxy Training Material27
    • Data analysis27
    • Metagenomics27
    • Rare Diseases & Research27
    • Using Galaxy and Managing your Data26
    • Microbiome25
    • Nextflow25
    • RDM25
    • Ecology24
    • Epigenetics22
    • data stewardship22
    • work-in-progress22
    • ansible21
    • metagenomics21
    • Containerization20
    • Shiny20
    • sensitive data19
    • ChIP-seq19
    • REDCap19
    • git-gat19
    • interactive-tools19
    • life-sciences19
    • metadata19
    • Cloud computing18
    • Docker18
    • Metadata18
    • Programming18
    • Variant Analysis18
    • Sequence analysis17
    • Teaching and Hosting Galaxy training17
    • Climate16
    • Roslin Institute16
    • Data reuse15
    • FAIR Data15
    • Julia15
    • Metabolomics15
    • Spatial transcriptomics15
    • fair15
    • jbrowse115
    • prokaryote15
    • High performance computing14
    • Imaging14
    • earth-system14
    • gmod14
    • Data management planning13
    • Babraham Institute13
    • Data mining13
    • EeLP13
    • Europe PMC13
    • Introduction to Galaxy Analyses13
    • NGS13
    • Ontologies13
    • Phylogenetics13
    • Quarto13
    • eLearning13
    • transcriptomics13
    • Clinical data12
    • ELIXIR-CONVERGE12
    • FAIR principles12
    • Genome assembly12
    • HPC12
    • Image analysis12
    • Literature search12
    • Online Repository12
    • Rmarkdown12
    • SPARQL12
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    • Difficulty level
    • Not specified1949
    • Beginner827
    • Intermediate230
    • Advanced44
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    • Licence
    • License Not Specified1623
    • Creative Commons Attribution 4.0 International990
    • Creative Commons Attribution Share Alike 4.0 International131
    • MIT License90
    • Creative Commons Zero v1.0 Universal36
    • GNU General Public License v3.0 only34
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International33
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International23
    • Apache License 2.017
    • Other (Not Open)16
    • Other (Non-Commercial)14
    • BSD 3-Clause "New" or "Revised" License13
    • Creative Commons Attribution Non Commercial 4.0 International9
    • Creative Commons Attribution 1.0 Generic5
    • Artistic License 2.02
    • Creative Commons Attribution No Derivatives 4.0 International2
    • GNU Affero General Public License v3.0 only2
    • GNU General Public License v2.0 only2
    • Academic Free License v3.01
    • Creative Commons Attribution 2.0 Generic1
    • Creative Commons Attribution No Derivatives 2.0 Generic1
    • Creative Commons Attribution Non Commercial 2.0 Generic1
    • Do What The F*ck You Want To Public License1
    • Open Data Commons Attribution License v1.01
    • Other (Open)1
    • The Unlicense1
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    • Target audience
    • Students511
    • Researchers213
    • Biologists, Genomicists, Computer Scientists170
    • Post-Doctoral Fellows164
    • PhD students140
    • Clinicians110
    • Galaxy Administrators96
    • Graduate students87
    • Graduate Students80
    • Instructors49
    • Life Science Researchers43
    • Biologists42
    • bioinformaticians35
    • Bioinformaticians26
    • PhD candidate26
    • Scientific community26
    • PhD candidates23
    • Scientists20
    • post-docs20
    • Bench biologists18
    • Data Managers18
    • Academia/ Research Institution17
    • Industry17
    • Non-Profit Organisation17
    • Beginners16
    • Data Scientists16
    • Trainers16
    • life scientists16
    • Healthcare15
    • Novice15
    • beginner bioinformaticians15
    • Researcher in life sciences13
    • Research Scientists12
    • Biomedical Researchers11
    • Computational biologists11
    • data stewards11
    • software developers, bioinformaticians11
    • health professionals10
    • Intermediate10
    • Master students10
    • PhD Students10
    • biocurators10
    • Biomedical researchers9
    • Training Designers9
    • Training instructors9
    • healthcare professionals9
    • PhD8
    • biologists8
    • Bioinformatician7
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    • Life Scientists7
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    • modelers7
    • Beginner6
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    • Patient Advocates 6
    • rare disease patients representatives5
    • Chemists5
    • Clinical Scientists5
    • General Interest5
    • Post Docs5
    • Undergraduate students5
    • computational scientists5
    • data managers5
    • plant researchers5
    • postgrad5
    • project manager5
    • Anyone wishing to use bioinformatics resources to find basic information about a virus.4
    • Curators4
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    • Laboratory technicians4
    • Life scientists with programming skills4
    • PI4
    • PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
    • Veterinarians4
    • postdocs4
    • postdoctoral researchers4
    • researchers4
    • Biologists with little or no prior computational experience3
    • Database users3
    • Ontologists3
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    • Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
    • Technicians3
    • data steward / data manager3
    • geneticists3
    • medical students3
    • postdoc3
    • programmers3
    • research software engineers and researchers writing code3
    • software engineers3
    • teachers3
    • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
    • Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
    • Beginner informatics2
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    • Author
    • Helena Rasche127
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    • Teaching materials at the Harvard Chan Bioinformatics Core25
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    • Yvan Le Bras23
    • Fotis E. Psomopoulos21
    • Michelle Brazas21
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
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    • Anne Fouilloux18
    • Bazante Sanders18
    • Katarzyna Kamieniecka18
    • Krzysztof Poterlowicz18
    • Laura Cooper18
    • Marie Josse18
    • Terri Attwood18
    • UC Davis Bioinformatics Core Training Page18
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    • posit::conf(2024)17
    • Data Carpentry16
    • Cristóbal Gallardo15
    • Martin Morgan15
    • Maria Doyle14
    • Pratik Jagtap14
    • Sergio Martínez Cuesta14
    • bioinformatics.ca14
    • CRUK CI Bioinformatics Core13
    • Dave Clements13
    • Delphine Lariviere13
    • Donny Vrins13
    • James Johnson13
    • Julia Jakiela13
    • Katherine Do13
    • Mijke Jetten13
    • Samaha, Georgina (orcid: 0000-0003-0419-1476)13
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    • Andrew Mason12
    • Celia van Gelder12
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    • Monique Zahn12
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    • Personalized Health Informatics Group12
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    • Simon Bray12
    • Wandrille Duchemin12
    • nekrut12
    • Anup Kumar11
    • Khaled Jum'ah11
    • Mathieu Bourgey11
    • Paul Zierep11
    • Pavankumar Videm11
    • Canadian Bioinformatics Workshops10
    • Daniel Blankenberg10
    • Instituto Gulbenkian de Ciência10
    • Martin Čech10
    • Paul Yorke10
    • Alexander Botzki9
    • Anika Erxleben9
    • David Wishart9
    • Fred Hutch Data Science Lab9
    • Jared Simpson9
    • John Chilton9
    • Lucille Delisle9
    • Praveen Kumar9
    • allegra.via Via9
    • rstudio::conf(2022)9
    • Allegra Via8
    • Anne Pajon8
    • AstraZeneca8
    • Avans Hogeschool8
    • Boris Steipe8
    • Diana Pilvar8
    • Emma Leith8
    • Helen Brown8
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    • Contributor
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    • Helena Rasche496
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    • Anthony Bretaudeau105
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    • Wendi Bacon77
    • Nate Coraor70
    • Gildas Le Corguillé62
    • Armin Dadras61
    • Marius van den Beek60
    • William Durand59
    • Robert Andrews55
    • Simon Gladman53
    • The Carpentries Incubator47
    • Mehmet Tekman46
    • Lucille Delisle44
    • Munazah Andrabi43
    • Pavankumar Videm37
    • Teresa Müller37
    • Yvan Le Bras37
    • Melanie Föll35
    • Wolfgang Maier35
    • Beatriz Serrano-Solano33
    • SIB Swiss Institute of Bioinformatics29
    • Simon Bray28
    • Teaching materials at the Harvard Chan Bioinformatics Core25
    • Anne Fouilloux24
    • Anup Kumar24
    • Donny Vrins23
    • Maria Doyle23
    • Peter van Heusden23
    • Subina Mehta23
    • Julia Jakiela20
    • NBIS - National Bioinformatics Infrastructure Sweden20
    • posit-conf-202320
    • Bazante Sanders19
    • Anton Nekrutenko18
    • UC Davis Bioinformatics Core Training Page18
    • Khaled Jum'ah17
    • posit::conf(2024)17
    • Data Carpentry16
    • Deepti Varshney16
    • Pratik Jagtap16
    • Mélanie Petera14
    • bioinformatics.ca14
    • CRUK CI Bioinformatics Core13
    • Delphine Lariviere13
    • Marie Josse13
    • Matthias Bernt13
    • Timothy J. Griffin13
    • Pablo Moreno12
    • Dave Clements11
    • David López11
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    • Paul Zierep11
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    • Canadian Bioinformatics Workshops10
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    • The Gulbenkian Training Programme in Bioinformatics10
    • Fred Hutch Data Science Lab9
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    • rstudio::conf(2022)9
    • Alexandre Cormier8
    • AstraZeneca8
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    • Bioinformatics, Rockefeller University7
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    • Daniel Sobral7
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    • Leonid Kostrykin7
    • Markus Englund7
    • Mattias Strömberg7
    • Morgan Howells7
    • Niclas Jareborg7
    • Sergio Martínez Cuesta7
    • Stephan Nylinder7
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3050 materials found
  • Course materials

    Programming Formalisms

    •• intermediate
    software development best practices
  • One line perl

    ELIXIR node event
    •• intermediate
  • DanChitwood/plants_and_python

    ELIXIR node event
    Python script Python
  • Recorded webinar

    Navigating UniProt: a brief overview and recent updates

    ELIXIR node event
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    Applied Metagenomics - AM22 (October 11-14, 2022)

    ELIXIR node event
    •• intermediate
    Metagenomics Metagenomic sequencing metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly Genome analysis
  • Course materials

    Applied Metagenomics - AM21 (November 1-5, 2021)

    ELIXIR node event
    •• intermediate
    Metagenomics Metagenomic sequencing metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly Genome analysis
  • slides

    Building Reliable Machine Learning Models with PyCaret: A Case Study on the LORIS Model

    • beginner
    Statistics and probability Statistics and machine learning
  • Tutorial, Slides, Scripts

    Genome assembly, annotation and comparative genomics - EBP-Nor workshop 2024

    ELIXIR node event
    Bioinformatics Genomics Comparative genomics Assembly Annotation
  • WEBINAR: No code, no problem - data analysis for biologists with Galaxy Australia

    Bioinformatics Data analysis
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    Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy

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    Imaging bioimaging
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