Register training material
3 materials found

Tools: DISEASES 


Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware...

Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining

STRING exercises

Hands-on exercises using the STRING, STITCH, and DISEASES databases through their respective web interfaces. The exercises will teach you how to:

  • retrieve a STRING network for a protein of interest *...

Scientific topics: Bioinformatics, Molecular interactions, pathways and networks, Protein interactions

Cytoscape stringApp exercises

Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases.

The exercises will teach you how to:

  • retrieve...

Scientific topics: Bioinformatics, Molecular interactions, pathways and networks, Protein interactions, Proteomics, Data visualisation