Welcome to TeSS: ELIXIR's Training Portal

Browsing, discovering and organising life sciences training resources, aggregated from ELIXIR nodes and 3rd-party providers.

Latest Content in TeSS

WORKSHOP: Single cell RNAseq analysis in R

Analysis and interpretation of single cell RNAseq (scRNAseq) data requires dedicated workflows. In this hands-on workshop we will show you how to perform single cell analysis using[ Seurat](https://satijalab.org/seurat/index.html) - an R package for QC, analysis, and exploration of single-cell...

Scientific topics: RNA-Seq

Keywords: Single Cell technologies, scRNAseq, Seurat, R software

Added to TeSS 1 day ago
Expanding the SPHN RDF Schema

This training module will provide researchers with an introduction on how to expand the SPHN RDF Schema using an ontology editor.

Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science

Keywords: Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL

Added to TeSS 2 days ago
Training Primer (RDF and SPARQL)

This training provides a first introduction to RDF and SPARQL.

Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science

Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology

Added to TeSS 2 days ago
Semantic Standards

This training module provides an introduction on the key semantic standards used within SPHN.

Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology

Keywords: Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD

Added to TeSS 2 days ago
RDF Schema and Data Visualization

This training module will provide researchers with an introduction on how to explore and visualize the SPHN ontology and mock data.

Scientific topics: Data visualisation, Medical informatics, FAIR data, Data management, Computer science

Keywords: Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data

Added to TeSS 2 days ago
Validate Graph Data with SHACL

This training module will provide researchers with an introduction on SHACL for RDF graphs validation.

Scientific topics: Medical informatics, FAIR data, Data management, Computer science

Keywords: Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF, RDF graph validation

Added to TeSS 2 days ago
Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK 2022

During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues...

Added to TeSS 11 days ago
WEBINAR: Getting started with whole genome mapping and variant calling on the command line

Life scientists are increasingly using whole genome sequencing (WGS) to ask and answer research questions across the tree of life. Before any of this work can be done, there is the essential but challenging task of processing raw sequencing data. Processing WGS data is a computationally...

Scientific topics: Whole genome sequencing, Sequencing, Genomics, Bioinformatics, Workflows

Added to TeSS 12 days ago
Single-Cell Analysis

This week-long course will cover the practicalities of single-cell sample prep and analysis with a particular focus on single-cell RNA-seq libraries.  Course coordinators: Dr. Susan Kloet (LUMC) Dr. Miao-Ping Chien (Erasmus MC) Dr. Ahmed Mahfouz (LUMC) Course Credits: The study… The post...

Added to TeSS 18 days ago
[ONLINE] Data Carpentry @ EPCC 18-21 July 2022

Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly...

Added to TeSS 21 days ago