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  • Executive Masters in Management of Research Infrastructures

    20 September 2017 - 15 March 2019

    Milan, Italy

    Elixir node event
    Executive Masters in Management of Research Infrastructures https://tess.elixir-europe.org/events/executive-masters-in-management-of-research-infrastructures This Masters development programme is aimed at current Research Infrastructures managers and leaders who wish to develop the competencies required to meet the needs of Research Infrastructures in the planning, construction and operation phases. 2017-09-20 12:00:00 UTC 2019-03-15 12:00:00 UTC University of Milano-Bicocca, Milan, Italy University of Milano-Bicocca Milan Italy 20126 [] Claire Johnson [] [] [] [] []

  • Online Resources and Biological Data Analysis

    9 August - 22 November 2018

    Elixir node event
    Online Resources and Biological Data Analysis https://tess.elixir-europe.org/events/online-resources-and-biological-data-analysis This webinar series provides an overview of publicly available data resources, with an emphasis on those provided by the EMBL-European Bioinformatics Institute. 2018-08-09 15:30:00 UTC 2018-11-22 16:00:00 UTC [] Cath Brooksbank [] [] [] [] []

  • CAS Personalized Molecular Oncology

    1 October 2018 - 31 July 2019

    Basel, Switzerland

    Elixir node event
    CAS Personalized Molecular Oncology https://tess.elixir-europe.org/events/cas-personalized-molecular-oncology The CAS in Personalized Molecular Oncology aims at providing a comprehensive and integrative view of the field, by covering all the aspects involved along the pipeline: (i) tumor biology and genetics, (ii) molecular pathology, (iii) clinical bioinformatics, and (iv) clinical oncology. First of its kind in Switzerland, it will focus on the methodologies used to generate, analyze and interpret patients’ molecular profiles, also touching upon the associated technical, regulatory and ethical challenges. As an important outcome, it will establish a common language between the wide range of professionals involved in the personalized oncology process, from biologists, bioinformaticians, pathologists to clinicians, enabling an efficient and better informed use of e.g. genomic data for both routine clinical practice and clinical research. Moreover, it should empower professionals to develop a vision for their own institution, by critically evaluating the potential benefits and limitations of current and future developments in personalized oncology. The CAS is organized jointly by the University Hospital of Basel, the University Hospital of Lausanne, and the SIB Swiss Institute of Bioinformatics. 2018-10-01 09:00:00 UTC 2019-07-31 17:00:00 UTC SIB Swiss Institute of Bioinformatics Pathologie Universitätsspital Basel, 40, Schönbeinstrasse, Basel, Switzerland Pathologie Universitätsspital Basel, 40, Schönbeinstrasse Basel Switzerland University Hospital of BaselSIB Swiss Institute of BioinformaticsUniversity Hospital of Lausanne Dr. Aitana Lebrand Clinical Bioinformatics SIB | Swiss Institute of Bioinformatics Ch. des Mines 9 CH-1202 Genève Tel. +41 (0)22 379 02 67 aitana.lebrand@sib.swiss [] Professionals involved in personalized molecular oncology, including laboratory managers, biologists, bioinformaticians, pathologists, geneticists, clinicians and pharmaceutical company employees. workshops_and_courses registration_of_interest Tumor biology and geneticsMolecular pathologyClinical BioinformaticsClinical oncology

  • Metabolomics Data Processing and Data Analysis

    8 October - 2 November 2018

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis This online course will explore the tools and approaches that are used to process and analyse metabolomics data, we will investigate the challenges that are typically encountered in the analysis of metabolomics data and provide solutions to overcome these problems. The course will be delivered using a combination of short videos, articles, discussions, and online workshops with step-by-step instructions and test data sets. 2018-10-08 09:00:00 UTC 2018-11-02 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []

  • Software Carpentry - DC Ecology: Instructor Mentoring Workshop

    16 October - 20 November 2018

    Software Carpentry - DC Ecology: Instructor Mentoring Workshop https://tess.elixir-europe.org/events/software-carpentry-dc-ecology-instructor-mentoring-workshop Find out more at https://tenet-rccpii.github.io/2018-10-16-online-r/ 2018-10-16 09:00:00 UTC 2018-11-20 00:00:00 UTC Software Carpentry DC Ecology: Instructor Mentoring Workshop DC Ecology: Instructor Mentoring Workshop [] [] [] workshops_and_courses [] []

  • RNA-Seq analysis for differential expression

    19 - 26 October 2018

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-in-genepattern b'You will execute a complete analysis workflow in GenePattern and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using EdgeR and DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • tophat2 • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n\n' 2018-10-19 09:30:00 UTC 2018-10-26 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []

  • NETTAB 2018: Building a FAIR Bioinformatics environment

    22 - 24 October 2018

    Genova, Italy

    NETTAB 2018: Building a FAIR Bioinformatics environment https://tess.elixir-europe.org/events/nettab-2018-building-a-fair-bioinformatics-environment NETTAB 2018 is organised in collaboration with ELIXIR Nodes of the UK and Italy as well as the Italian Society of Bioinformatics, BITS. The main focus will be on FAIR principles in bioinformatics, a challenging topic that we hope will attract many researchers from all over the world, including but not limited to, Bioinformaticians, Biologists, Computer Scientists, and others working or interested in the above research scope. The FAIR Guiding Principles for scientific data management and stewardship, published in 2016, has sparked worldwide interest across the biology community: from grassroots to policymakers, and from data providers to publishers. In order to make the FAIR concept a reality, we need to answer many questions, like: What is FAIRness? How to make FAIR data a reality? How to facilitate the translation to FAIR data? How to measure it? On these topics, there are many ongoing projects, such as EOSCpilot, FAIRmetrics, FAIRsharing, and GO-FAIR. Now is the perfect time to discuss on these topics and related actions, and to move on from FAIR principles to FAIR practice. The workshop will provide an excellent environment and a range of opportunities to present and discuss methods, theoretical approaches, algorithms, tools, platforms, practical applications and experiences of FAIR in Bioinformatics. 2018-10-22 09:00:00 UTC 2018-10-24 17:00:00 UTC NETTAB Ospedale Policlinico San Martino, 10, Largo Rosanna Benzi, Genova, Italy Ospedale Policlinico San Martino, 10, Largo Rosanna Benzi Genova Città Metropolitana di Genova Italy Data management [] paolo.romano@hsanmartino.it - paolo.dm.romano@gmail.com ELIXIR [] meetings_and_conferences [] FAIR

  • Genome sequencing technologies, assembly, variant calling and statistical genomics

    22 October - 2 November 2018

    Oslo, Norway

    Genome sequencing technologies, assembly, variant calling and statistical genomics https://tess.elixir-europe.org/events/genome-sequencing-technologies-assembly-variant-calling-and-statistical-genomics 2018-10-22 09:00:00 UTC 2018-11-02 17:00:00 UTC NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology Department of Informatics, Ole-Johan Dahls hus, Oslo, Norway Department of Informatics, Ole-Johan Dahls hus Oslo Norway Genomics [] [] [] workshops_and_courses [] []

  • Genome sequencing technologies, assembly, variant calling and statistical genomics

    22 October - 2 November 2018

    Oslo, Norway

    Elixir node event
    Genome sequencing technologies, assembly, variant calling and statistical genomics https://tess.elixir-europe.org/events/genome-sequencing-technologies-assembly-variant-calling-and-statistical-genomics-3d1544a3-a560-4b49-9e8c-af9167caea91 2018-10-22 09:00:00 UTC 2018-11-02 17:00:00 UTC NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology Gaustadalléen 23, 23, Gaustadalléen, Oslo, Norway Gaustadalléen 23, 23, Gaustadalléen Oslo Oslo kommune Norway Sequencing Statistics and probability Bioinformatics Genomics university of Oslo contact-norbis@uib.no NORBIS PhD studentsPost DocsResearchers [] registration_of_interest genomicsbioinformaticsGenome sequence analysis

  • Analysis of High Throughput Sequencing Data

    23 - 26 October 2018

    Cambridge, United Kingdom

    Elixir node event
    Analysis of High Throughput Sequencing Data https://tess.elixir-europe.org/events/analysis-of-high-throughput-sequencing-data-0a5a76aa-cfbc-474a-8901-f6c6f46e3d3e This course will familiarise participants with methodologies for bioinformatics analysis on next generation sequencing (NGS) data. 2018-10-23 14:00:00 UTC 2018-10-26 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Lucie Smith [] [] [] [] []

  • Productivity tools for High Performance Computing @IT4I

    24 - 25 October 2018

    Productivity tools for High Performance Computing @IT4I https://tess.elixir-europe.org/events/productivity-tools-for-high-performance-computing-it4i-e46712b9-d023-439a-9ffc-de2a4392158f Annotation This HPC training continues to expand your skills and knowledge in using productivity tools and technologies, to be able to quickly build up an efficient HPC user environment, from scratch, without admin rights. We shall demonstrate tools and procedures tailored to the Salomon and Anselm clusters, however they are easily replicable on any HPC system. The topics include: GIT - a version control system for coordinating work among multiple developers GIT (the stupid content tracker) is the world's most used Version Control System. Originally designed for development of Linux kernel, it has evolved to universal tool for managing changes in code, configuration and documents, especially if those changes are not done by a single person. We will help you understand how GIT works internally and introduce you to basic GIT commands, that should cover 99% of daily GIT usage. KVM - a virtualization infrastructure for the Linux kernel that converts it into a hypervisor KVM (for Kernel-based Virtual Machine) is a full virtualization solution for Linux on x86 hardware containing virtualization extensions (Intel VT or AMD-V). It provides the ability to run complex software stacks, including MS Windows, on powerful, linux-based supercomputer nodes with very low overhead costs. Using KVM, one can run multiple virtual machines running unmodified Linux or Windows images. Each virtual machine has private virtualized hardware: a network card, disk, graphics adapter, etc. In this lesson we will introduce the QEMU machine emulator using KVM virtualization, learn how to set up the QEMU/KVM on the  Salomon supercomputer, create a QEMU system image, install the operating system into the image, set up the networking and data access  and execute the calculations via the QEMU/KVM. We will also discuss visualized Ethernet networks in the context of QEMU and VDE2. Docker & Singularity - technologies for paravirtualization Docker for HPC? Yes, Singularity! Docker provides the ability to package and run an application in a loosely isolated environment called a container. The application with all settings and libraries can be packed together and then run on any other computer. It is perfect for developers, hosting providers, server farms, you name it! But, is it so good for supercomputers too? Let's look at why there are some problems with using Docker in shared environment and why Singularity is different. Singularity is developed with HPC in mind and is directly intended for use on HPC clusters with the direct support of technology such as OpenMPI. We will show you how to use Singularity, convert Docker images, create new containers and everything else you need to know about running a Singularity container in an HPC environment. EasyBuild - install and build custom programs In the supercomputer environment, pre-configured modules of various programs can be used. But how do I get my own program when I am a developer, or I need a program that is not installed? What if I need a different version of the program than the available modules? There is the possibility of sending a request for installation to the support, but what if I need it immediately? There are more options to manually build a program, but not everyone can do it because the user cannot install on the system but only in his own storage, and you need to know the compiler switches and system settings. You can also build a program using the tools that compile for us and create environment setting modules for that. In the lecture, we shall demonstrate how to manually compile a program, how to modify the environment so that the program can be used. We shall show you the EasyBuild tool to build a program and introduce new releases, such as creating Docker or Singularity rules and installing programs using EasyBuild directly into the Singularity image. Purpose of the course The participants will broaden their range of techniques for efficient use of HPC by mastering modern technologies for code management and execution. About the tutors The tutors are core members of the Supercomputing Services division of IT4Innovations. Branislav Jansík obtained his PhD in computational chemistry at the Royal Institute of Technology, Sweden in 2004. He took a postdoctoral position at IPCF, Consiglio Niazionale delle Ricerche, Italy,  to carry on development and applications of high performance computational methods for molecular optical properties. From 2006 he worked on  the development of highly parallel optimization methods in the domain of electronic structure theory at Aarhus University, Denmark. In 2012 he joined IT4Innovations, the Czech national supercomputing center, as the head of Supercomputing Services. He has published over 35 papers and co-authored the DALTON electronic structure theory code. Josef Hrabal obtained his Master's Degree in Computer Science and Technology at VŠB - Technical University of Ostrava in 2014. Since then he has contributed to projects within the University, and in 2017 he joined IT4Innovations as an HPC application specialist. David Hrbáč obtained his Master's Degree in Measurement and Control Engineering at VŠB - Technical University of Ostrava in 1997. Since 1994 he has worked for many IT companies as a system architect and CIO. In 2013 he joined IT4Innovations. Lukáš Krupčík obtained his Master's Degree in Computer Science and Technology at VŠB - Technical University of Ostrava in 2017. In 2016 he joined IT4Innovations as an HPC application specialist. Lubomír Prda obtained his Master's Degree in Information and Communication Technologies at VŠB - Technical University of Ostrava in 2010. Before joining the IT4Innovations team as an HPC specialist in 2016, he worked at the Tieto Corporation as a network engineer, and later moved to identity and access management for the company's nordic and international customers. Lubomír's focus is to manage and maintain the centre's back-end IT infrastructure and services. Roman Slíva obtained his Master's Degree in Computer Science at VŠB - Technical University of Ostrava in 1998. He worked as an IT system specialist and project leader in the areas of servers, high performance computing, and storage and backup. From 2007-2009 he led the IT Server Infrastructure group at VŠB - Technical University of Ostrava. In 2011 he joined IT4Innovations as an HPC system specialist and architect. https://events.prace-ri.eu/event/780/ 2018-10-24 07:30:00 UTC 2018-10-25 15:00:00 UTC [] [] [] workshops_and_courses [] []

  • An Introduction to Solving Biological Problems with R

    24 - 25 October 2018

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-7c7c2861-6185-4e2e-8ca6-ce5a8316ba9e [R](https://www.r-project.org/) is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. The course website providing links to the course materials is [here](http://cambiotraining.github.io/r-intro/). Please note that although we will demonstrate how to perform statistical analysis in R, we will not cover the theory of statistical analysis in this course. Those seeking an in-depth explanation of how to perform and interpret statistical tests are advised to see the list of Related courses. Moreover, those with some programming experience in other languages (e.g. Python, Perl) might wish to attend the follow-on [Data Analysis and Visualisation in R](http://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intR) course. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2601305&course-title=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R).'' 2018-10-24 08:30:00 UTC 2018-10-25 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] []

  • Computing skills for reproducible research: Software Carpentry

    24 - 25 October 2018

    Ghent, Belgium

    Elixir node event
    Computing skills for reproducible research: Software Carpentry https://tess.elixir-europe.org/events/computing-skills-for-reproducible-research-software-carpentry After the workshop, participants will be able to: write and organise their own scripts for data analysis use version control to keep track of, and revert changes to their files run scripts from the command line 2018-10-24 09:00:00 UTC 2018-10-25 17:00:00 UTC ELIXIR Belgium Ghent, Ghent, Belgium Ghent Ghent East Flanders Belgium 9000 [] [] Researchers [] [] []

  • Software Carpentry - Carrothers Library, URI Kingston Campus

    24 - 25 October 2018

    Software Carpentry - Carrothers Library, URI Kingston Campus https://tess.elixir-europe.org/events/software-carpentry-carrothers-library-uri-kingston-campus Find out more at https://jt14den.github.io/2018-10-24-ttt-providence/ 2018-10-24 09:00:00 UTC 2018-10-25 00:00:00 UTC Software Carpentry Carrothers Library, URI Kingston Campus Carrothers Library, URI Kingston Campus [] [] [] workshops_and_courses [] []

  • Software Carpentry - ZB MED

    24 - 25 October 2018

    Software Carpentry - ZB MED https://tess.elixir-europe.org/events/software-carpentry-zb-med-7d0a17ea-ca86-4428-be80-a54b866e1b8f Find out more at https://zbmed.github.io/2018-10-24-Library_Carpentry_Cologne/ 2018-10-24 09:00:00 UTC 2018-10-25 00:00:00 UTC Software Carpentry ZB MED ZB MED [] [] [] workshops_and_courses [] []

  • Software Carpentry - North West University, Vaal Campus Library

    24 - 25 October 2018

    Software Carpentry - North West University, Vaal Campus Library https://tess.elixir-europe.org/events/software-carpentry-north-west-university-vaal-campus-library Find out more at https://nwu-eresearch.github.io/2018-10-25-Open-Access-Week/ 2018-10-24 09:00:00 UTC 2018-10-25 00:00:00 UTC Software Carpentry North West University, Vaal Campus Library North West University, Vaal Campus Library [] [] [] workshops_and_courses [] []

  • Software Carpentry - University of Ghent

    24 - 25 October 2018

    Software Carpentry - University of Ghent https://tess.elixir-europe.org/events/software-carpentry-university-of-ghent Find out more at https://orchid00.github.io/2018-10-24-ugent/ 2018-10-24 09:00:00 UTC 2018-10-25 00:00:00 UTC Software Carpentry University of Ghent University of Ghent [] [] [] workshops_and_courses [] []

  • Chemical Proteomics 2018

    24 - 26 October 2018

    Stockholm

    Elixir node event
    Chemical Proteomics 2018 https://tess.elixir-europe.org/events/chemical-proteomics-2018 2018-10-24 09:00:00 UTC 2018-10-26 00:00:00 UTC Stockholm Stockholm [] [] [] workshops_and_courses [] []

  • Introduction to Statistical Analysis

    24 October 2018

    Sheffield, United Kingdom

    Introduction to Statistical Analysis https://tess.elixir-europe.org/events/introduction-to-statistical-analysis-57925cde-fdc6-49b3-8b1b-a66ccea04dd6 This course provides a refresher on the foundations of statistical analysis. Practicals are conducted using the ‘Shiny’ package; which provides an accessible interface to the R statistical language. Note that this is not a course for learning about the R statistical language itself. If you wish to learn more about R, please see other courses at the Sheffield Bioinformatics Core. 2018-10-24 10:00:00 UTC 2018-10-24 16:00:00 UTC Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • A short tour of UCSC data

    24 October 2018

    A short tour of UCSC data https://tess.elixir-europe.org/events/a-short-tour-of-ucsc-data 2018-10-24 11:00:00 UTC 2018-10-24 12:30:00 UTC ARDC Australia, Australia Australia Australia Genomics Bioinformatics [] [] [] [] [] genome browsingBioinformatics

  • Software Carpentry - Old Dominion University

    25 - 26 October 2018

    Software Carpentry - Old Dominion University https://tess.elixir-europe.org/events/software-carpentry-old-dominion-university Find out more at https://rbavery.github.io/2018-10-25-odu/ 2018-10-25 09:00:00 UTC 2018-10-26 00:00:00 UTC Software Carpentry Old Dominion University Old Dominion University [] [] [] workshops_and_courses [] []

  • Software Carpentry - University of North Texas

    25 - 26 October 2018

    Software Carpentry - University of North Texas https://tess.elixir-europe.org/events/software-carpentry-university-of-north-texas-5fe4f9f6-c71f-42e5-9e77-ad780b455c45 Find out more at https://unt-carpentries.github.io/2018-10-25-unt-swc/ 2018-10-25 09:00:00 UTC 2018-10-26 00:00:00 UTC Software Carpentry University of North Texas University of North Texas [] [] [] workshops_and_courses [] []

  • Software Carpentry - Washington State University

    25 - 26 October 2018

    Software Carpentry - Washington State University https://tess.elixir-europe.org/events/software-carpentry-washington-state-university-462188a6-4d3c-4af3-a178-e30988688be9 Find out more at https://mbrousil.github.io/2018-10-25-wsu/ 2018-10-25 09:00:00 UTC 2018-10-26 00:00:00 UTC Software Carpentry Washington State University Washington State University [] [] [] workshops_and_courses [] []

  • Ensembl Browser Workshop, BioCity Turku, 26 October 2018

    26 October 2018

    Turku, Finland

    Elixir node event
    Ensembl Browser Workshop, BioCity Turku, 26 October 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-biocity-turku-26-october-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2018-10-26 09:00:00 UTC 2018-10-26 17:00:00 UTC Turku Centre for Biotechnology, Turku, Finland Turku Centre for Biotechnology Turku Finland 20520 [] Astrid Gall [] [] [] [] []

  • FAIR Data Management in Life Sciences

    27 October 2018

    Lyon, France

    FAIR Data Management in Life Sciences https://tess.elixir-europe.org/events/fair-data-management-in-life-sciences Are you curious about data management, or how research groups handle their data management pipelines? Do you want to engage with other like-minded researchers in best practice for your data management? Are you overwhelmed by new regulations from funders requiring data management plans? Or are you a developer in the data management sphere? Then come and join our workshop/user meeting on “FAIR Data Management in Life Sciences” as a satellite meeting of the ICSB 2018 in Lyon France. It will be held Saturday 27th October before the main meeting. Registration is free, and is first come first served. Research projects with advanced data management pipelines will be presenting their best practice. Thought leaders in data management will be there to help you with any questions you have. Importantly, YOU get to decide on break out topics or steer discussion during the day. This workshop will be hosted by the FAIRDOM infrastructure (https://fair-dom.org), and bring together FAIRDOM users, FAIR platform developers, and researchers from across the world to discuss: (i) best practices in data management; (ii) cutting edge platform development, and; (iii) community use and requirements of FAIR data platforms. Our key theme this year will be integrating the data pipeline for cross platform data exchange. Throughout the day there will be: (i) presentations by research groups who are pioneering data management in systems, synthetic, and agricultural life-sciences; (ii) networking events so attendees can get to know FAIR platform developers and expert data managers; (iii) training in FAIR data management platforms, including FAIRDOM platforms, and COMBINE standards; (iv) discussions about the future of FAIR and data management within life-sciences. 2018-10-27 09:00:00 UTC 2018-10-27 18:00:00 UTC FAIRDOM ENS Lyon - Site Monod, 46, Allée d'Italie, Lyon, France ENS Lyon - Site Monod, 46, Allée d'Italie Lyon Rhône France Systems biology Data management Systems medicine Bioinformatics University of ManchesterHeidelberg Institute for Theoretical Studies [] Life Science Researchersdata managersdata librariansPhD students, postDoc and PIs in Life Sciences, Biomedicine and Bioinformatics with little or no knowledge of network biology tools, who are interested in learning how to apply such tools in their research.life science industry workshops_and_courses first_come_first_served data managementtrainingexpertise exchangelife scienceslife sciences, bioinformaticsSystems biologySynthetic biologysystems medicinemetadata

  • COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology – ICSB 2018

    27 October 2018

    COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology – ICSB 2018 https://tess.elixir-europe.org/events/combine-de-nbi-tutorial-modelling-and-simulation-tools-in-systems-biology-icsb-2018 2018-10-27 09:00:00 UTC 2018-10-27 00:00:00 UTC [] [] [] [] [] []

  • Advanced modeling with COPASI - ICSB 2018

    27 October 2018

    Advanced modeling with COPASI - ICSB 2018 https://tess.elixir-europe.org/events/advanced-modeling-with-copasi-icsb-2018 2018-10-27 09:00:00 UTC 2018-10-27 00:00:00 UTC [] [] [] [] [] []

  • Software Carpentry - 한림대학교

    27 - 28 October 2018

    Software Carpentry - 한림대학교 https://tess.elixir-europe.org/events/software-carpentry-a748b7b4-c4f6-4709-a5bc-a7e6dc62c33f Find out more at https://statkclee.github.io/2018-10-27-hallym/ 2018-10-27 09:00:00 UTC 2018-10-28 00:00:00 UTC Software Carpentry 한림대학교 한림대학교 [] [] [] workshops_and_courses [] []

  • Containerised Bioinformatics: Docker and other tools for reproducible analysis

    29 October 2018

    Melbourne, Australia

    Containerised Bioinformatics: Docker and other tools for reproducible analysis https://tess.elixir-europe.org/events/containerised-bioinformatics-docker-and-other-tools-for-reproducible-analysis-8ea6f943-f007-425b-8c78-2216438b214a 2018-10-29 01:30:00 UTC 2018-10-29 04:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsDocker

  • Workshop on Research Objects (RO2018)

    29 October 2018

    Amsterdam, Netherlands

    Workshop on Research Objects (RO2018) https://tess.elixir-europe.org/events/workshop-on-research-objects-ro2018 In this workshop we will explore recent advancements in Research Objects and publishing of research data. **Deadlines**: * 2018-07-01 Abstracts due * 2018-07-15 Research articles and software/data articles due A travel bursary is available for accepted speakers, sponsored by [BioExcel](http://bioexcel.eu) (H2020-675728) ## Research Objects Scholarly Communication has evolved significantly in recent years, with an increasing focus on **Open Research**, [FAIR](https://doi.org/10.1038/sdata.2016.18)data sharing and community-developed open source methods. A question remains on how to publish, archive and explore digital research outputs. A number of initiatives have begun to explore how to package and describe research outputs, data, methods, workflows, provenance and structured metadata, reusing existing Web standards and formats. Such efforts aim to address the challenges of structuring multi-part research outcomes with their context, handling distributed and living content and porting and safely exchange what we collectively can call **Research Objects** between platforms and between researchers. In the workshop **RO2018**, part of [IEEE eScience 2018](https://www.escience2018.com) in Amsterdam, we will explore recent advancements in Research Objects and publishing of research data with peer-reviewed presentations, invited talks, short demos, lightning talks and break-out sessions to further build relationships across scientific domains and RO practitioners. ## Call for Papers RO2018 welcomes submissions of academic abstracts (1-2 pages), data/software articles (3-6 pages) and short research articles (4-8 pages) on cross-cutting case studies or specific research on topics including, but not limited to: FAIR metrics; platforms, infrastructure and tools; lifecycles; access control and secure exchange; examples of exploitation and application; executable containers; metadata, packaging and formats; credit, attribution and peer review; dealing with scale and distribution; driving adoption within current scholarly communications and alignments with community efforts; and domain-specific and cross-domain Research Objects. Further details on submitting: [http://www.researchobject.org/ro2018/submitting-to-ro2018/](http://www.researchobject.org/ro2018/submitting-to-ro2018/) ## Timeline 2018-07-01 Abstracts due 2018-07-15 Research articles and software/data articles due 2018-08-31 Notification of acceptance 2018-08-31 IEEE eScience 2018 early-bird registration deadline 2018-10-29 RO2018 workshop at IEEE eScience 2018 2018-10-29 09:00:00 UTC 2018-10-29 17:00:00 UTC The University of Manchester, researchobject.org, IEEE Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade, Amsterdam, Netherlands Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade Amsterdam Amsterdam Netherlands Computer science Data management Data architecture, analysis and design Data integration and warehousing Data identity and mapping Data submission, annotation and curation Informatics Ontology and terminology Software engineering Workflows [] For any questions, email the Workshop Organizers at ro2018@easychair.org BioExcel [] workshops_and_courses [] digital archivesdata repositorylinked dataWorkflows
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