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198 events found
  • Annotation automatique de génomes bactériens

    10 - 11 September 2020

    Annotation automatique de génomes bactériens https://tess.elixir-europe.org/events/annotation-automatique-de-genomes-bacteriens 2020-09-10 09:00:00 UTC 2020-09-11 00:00:00 UTC [] Véronique Martin [] [] [] [] []
  • ELIXIR Heads of Nodes Teleconference

    10 September 2020

    ELIXIR Heads of Nodes Teleconference https://tess.elixir-europe.org/events/elixir-heads-of-nodes-teleconference-f1a73842-db80-4770-a1b1-53c42ffbee57 The ELIXIR Heads of Nodes Teleconference is scheduled to take place on Thu, 10 September 2020 from 09:30 - 12:30 (BST) / 10:30 - 13:30 (CEST). This meeting is intended for the ELIXIR Heads of Nodes. 2020-09-10 09:30:00 UTC 2020-09-10 09:30:00 UTC [] [] [] meetings_and_conferences [] []
  • Comparaison de génomes microbiens

    11 - 12 September 2020

    Comparaison de génomes microbiens https://tess.elixir-europe.org/events/comparaison-de-genomes-microbiens 2020-09-11 09:00:00 UTC 2020-09-12 00:00:00 UTC [] Véronique Martin [] [] [] [] []
  • OpenMS at the German Conference for Bioinformatics (GCB)

    14 September 2020

    Frankfurt am Main, Germany

    OpenMS at the German Conference for Bioinformatics (GCB) https://tess.elixir-europe.org/events/openms-at-the-german-conference-for-bioinformatics-gcb TBA 2020-09-14 09:00:00 UTC 2020-09-14 17:00:00 UTC de.NBI Frankfurt am Main, Frankfurt am Main, Germany Frankfurt am Main Frankfurt am Main Darmstadt Germany [] [] [] meetings_and_conferences [] []
  • SeqAn at the German Conference for Bioinformatics (GCB)

    14 September 2020

    Frankfurt am Main, Germany

    SeqAn at the German Conference for Bioinformatics (GCB) https://tess.elixir-europe.org/events/seqan-at-the-german-conference-for-bioinformatics-gcb TBA 2020-09-14 09:00:00 UTC 2020-09-14 17:00:00 UTC de.NBI Frankfurt am Main, Frankfurt am Main, Germany Frankfurt am Main Frankfurt am Main Darmstadt Germany [] [] [] meetings_and_conferences [] []
  • ProteinsPlus at the German Conference for Bioinformatics (GCB)

    14 September 2020

    Frankfurt am Main, Germany

    ProteinsPlus at the German Conference for Bioinformatics (GCB) https://tess.elixir-europe.org/events/proteinsplus-at-the-german-conference-for-bioinformatics-gcb TBA 2020-09-14 09:00:00 UTC 2020-09-14 17:00:00 UTC de.NBI Frankfurt am Main, Frankfurt am Main, Germany Frankfurt am Main Frankfurt am Main Darmstadt Germany [] [] [] meetings_and_conferences [] []
  • Analyzing qPCR data with qbase+

    14 September 2020

    Ghent, Belgium

    Elixir node event
    Analyzing qPCR data with qbase+ https://tess.elixir-europe.org/events/analyzing-qpcr-data-with-qbase This training specifically focuses on the analysis of gene expression data using qbase+. During this training you will: create an experiment in qbase+ import run data customize sample properties select reference genes assess the quality of your qPCR data visualize and export the results 2020-09-14 09:00:00 UTC 2020-09-14 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • NGS bioinformatics quality control and variant annotation for cancer diagnosis

    14 September 2020

    Bern, Switzerland

    Elixir node event
    NGS bioinformatics quality control and variant annotation for cancer diagnosis https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis-46eda521-132e-4796-a920-cbbe89f76182 Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2020-09-14 09:00:00 UTC 2020-09-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Comparative Genomics

    16 - 18 September 2020

    Lausanne, Switzerland

    Elixir node event
    Comparative Genomics https://tess.elixir-europe.org/events/comparative-genomics-081ccefb-bceb-4008-b66a-ab370648018c Overview The aims of this course are to (i) explore key evolutionary concepts, (ii) examine different methodological approaches, and (iii) gain hands-on experience in eukaryotic comparative genomic analyses. 2020-09-16 09:00:00 UTC 2020-09-18 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to GPU programming with OpenACC @ MdlS/Idris

    17 - 18 September 2020

    Introduction to GPU programming with OpenACC @ MdlS/Idris https://tess.elixir-europe.org/events/introduction-to-gpu-programming-with-openacc-mdls-idris As the use of GPUs in HPC is spreading fast, several models are now available to programmers. During the tutorial we will introduce the directive-based approach to GPU programming. While being quite simple to implement, it allows to reach performance similar to lower level paradigms. We will present the basic concepts of OpenACC model through several examples and hands-on sessions. The main pitfalls and good practice will be presented. Also a part of the tutorial will be dedicated to more advanced topics such as multi-GPU usage. We will also give some insights of the tools available to assess the performance Learning Outcomes : - Ability to execute code on GPUs using OpenACC - Assessment of the performance of the code Requirements : - Basic knowledge of Fortran and/or C and/or C++ - No prior knowledge of OpenACC is required https://events.prace-ri.eu/event/1008/ 2020-09-17 07:30:00 UTC 2020-09-18 16:00:00 UTC [] [] [] workshops_and_courses [] []
  • Python for downstream data analysis

    21 - 22 September 2020

    Leuven, Belgium

    Elixir node event
    Python for downstream data analysis https://tess.elixir-europe.org/events/python-for-data-science Use libraries for advanced data manipulation and visualization Working with biological data using Biopython Being able to write scripts and functions from scratch for specific bioinformatics problems 2020-09-21 09:00:00 UTC 2020-09-22 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analyse de données de métabarcoding

    21 - 25 September 2020

    Analyse de données de métabarcoding https://tess.elixir-europe.org/events/analyse-de-donnees-de-metabarcoding-eff87534-19e9-4bfc-867c-e3b093b9de52 2020-09-21 09:00:00 UTC 2020-09-25 00:00:00 UTC [] Véronique Martin [] [] [] [] []
  • Data Science School: Machine learning applications for life sciences

    21 - 24 September 2020

    Cambridge, United Kingdom

    Elixir node event
    Data Science School: Machine learning applications for life sciences https://tess.elixir-europe.org/events/data-science-school-machine-learning-applications-for-life-sciences This School aims to familiarise biomedical students and researchers with principles of Data Science. Focusing on utilising machine learning algorithms to handle biomedical data, it will cover: effects of experimental design, data readiness, pipeline implementations, machine learning in Python, and related statistics, as well as Gaussian Process models. Providing practical experience in the implementation of machine learning methods relevant to biomedical applications, including Gaussian processes, we will illustrate best practices that should be adopted in order to enable reproducibility in any data science application. This event is sponsored by [Cambridge Centre for Data-Driven Discovery (C2D3)](https://www.bigdata.cam.ac.uk/). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3357195&amp;course-title=Data%20Science%20School).'' 2020-09-21 09:00:00 UTC 2020-09-24 14:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Machine learning Bioinformatics University of Cambridge Bioinformatics Training [] Students and researchers from life-sciences or biomedical backgroundswho haveor will shortly havethe need to apply the techniques presented during the course to biomedical data.The course is open to Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals<span style="color:#FF0000">Please note that all participants attending this course will be charged a registration fee. <span style="color:#0000FF"> Non-members of the University of Cambridge to pay £400. </span style> <span style="color:#0000FF">All Members of the University of Cambridge to pay £200. </span style> <span style="color:#FF0000">A booking will only be approved and confirmed once the fee has been paid in full.</span style> workshops_and_courses [] HDRUK
  • Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics

    23 - 25 September 2020

    Birmingham, United Kingdom

    Elixir node event
    Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics https://tess.elixir-europe.org/events/multiple-biofluid-and-tissue-types-from-sample-preparation-to-analysis-strategies-for-metabolomics-7d1a21e4-32f0-4e9a-a67c-32d2932fa6f5 This 3-day course provides a theoretical overview and hands-on training to apply multiple sample preparation and UPLC-MS methods to characterise the metabolomes of complex biological samples using the mass spec... 2020-09-23 09:00:00 UTC 2020-09-25 15:30:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Computational genomics course for hands-on data analysis 2020

    23 - 25 September 2020

    Berlin, Germany

    Computational genomics course for hands-on data analysis 2020 https://tess.elixir-europe.org/events/computational-genomics-course-for-hands-on-data-analysis-2020 Educators: Altuna Alkalin, Verdan Franke, Bora Uyar (RBC/deNBI-epi Scientists from Berlin) Date: 15-17 June 2020 Location: BIMSB, Max-Delbrück Center for Molecular Medicine, Berlin. Mitte Campus. Contents: The general aim of the course is to equip participants with practical and technical knowledge to analyze single cell RNA-seq data. With this aim in mind, we will go through unsupervised machine learning methods to analyze high-dimensional data sets, and move on to statistical methods developed to analyze bulk RNA-seq. Lastly, we will introduce analysis techniques used for single cell RNA-seq. There will be theoretical lectures followed by practical sessions where students directly apply what they have learned. The programming will be mainly done in R. Day 1: Intro to machine learning &amp; data visualization for genomics Day 2: Bulk RNA-seq analysis Day 3: Single cell RNA-seq analysis Learning goals: The course will be beneficial for first year computational biology PhD students, and experimental biologists and medical scientists who want to begin data analysis or are seeking a better understanding of computational genomics and analysis of popular sequencing methods.r Prerequisites: Some statistics and R programming experience will be good to keep up with the course. Practicals will be done in R. Keywords: Computational genomics, RNA-seq, Machine learing, Tools: R/Bioconductor Application Deadline: 15th of April 2020-09-23 09:00:00 UTC 2020-09-25 17:00:00 UTC de.NBI Berlin, Berlin, Germany Berlin Berlin Germany [] [] [] workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    23 September 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-a8e36e3f-7bff-40fb-bc07-755d310fe911 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2020-09-23 09:00:00 UTC 2020-09-23 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • neXtProt - an introduction

    24 September 2020

    Geneva, Switzerland

    Elixir node event
    neXtProt - an introduction https://tess.elixir-europe.org/events/nextprot-an-introduction More information soon 2020-09-24 09:00:00 UTC 2020-09-24 00:00:00 UTC SIB, Geneva, Switzerland SIB Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • neXtProt - an introduction

    24 September 2020

    Geneva, Switzerland

    Elixir node event
    neXtProt - an introduction https://tess.elixir-europe.org/events/nextprot-an-introduction-1bbf83e0-213b-4c2e-8a7e-a10424c47354 More information soon 2020-09-24 09:00:00 UTC 2020-09-24 00:00:00 UTC SIB, Geneva, Switzerland SIB Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Mathematics of life: Modelling molecular mechanisms

    28 September - 2 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Mathematics of life: Modelling molecular mechanisms https://tess.elixir-europe.org/events/mathematics-of-life-modelling-molecular-mechanisms This course will provide participants with an introduction to network analysis as well as modelling resources, tools and approaches used in systems biology. 2020-09-28 10:45:00 UTC 2020-10-02 10:45:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • UNIX scripting for Life Scientists

    1 - 2 October 2020

    Lausanne, Switzerland

    Elixir node event
    UNIX scripting for Life Scientists https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists More information on due time... 2020-10-01 09:00:00 UTC 2020-10-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • UNIX scripting for Life Scientists

    1 - 2 October 2020

    Lausanne, Switzerland

    Elixir node event
    UNIX scripting for Life Scientists https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists-ef67aec8-cc7b-4010-8668-fe9d5ba9091d More information on due time... 2020-10-01 09:00:00 UTC 2020-10-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • 2020 ELIXIR Industry Advisory Committee (IAC) autumn teleconference

    1 October 2020

    2020 ELIXIR Industry Advisory Committee (IAC) autumn teleconference https://tess.elixir-europe.org/events/2020-elixir-industry-advisory-committee-iac-autumn-teleconference The ELIXIR Industry Advisory Committee (IAC) will hold its annual autumn teleconference on Thursday, 1 October 2020. Further information will be made available to Committee members in due course. 2020-10-01 10:00:00 UTC 2020-10-01 10:00:00 UTC [] [] [] [] [] []
  • 9ème école de bioinformatique AVIESAN - IFB - INSERM

    4 - 9 October 2020

    Elixir node event
    9ème école de bioinformatique AVIESAN - IFB - INSERM https://tess.elixir-europe.org/events/9eme-ecole-de-bioinformatique-aviesan-ifb-inserm Initiation au traitement des données de génomique obtenues par séquençage à haut débit 2020-10-04 09:00:00 UTC 2020-10-09 00:00:00 UTC [] [] [] [] [] []
  • Modern Scientific C++ @ MdlS/Idris

    5 - 8 October 2020

    Modern Scientific C++ @ MdlS/Idris https://tess.elixir-europe.org/events/modern-scientific-c-mdls-idris In recent years, the C ++ language has evolved. To stick to the 1998/2003 standard is to miss many new features that make modern C ++ more robust, more powerful, and often more readable. Through this training, it is proposed to become familiar with syntactic novelties that facilitate the writing of code, modernized best practices to avoid the language traps, and a programming way that is easier to parallelize. This training is for scientific programmers who want to discover "modern" C ++ (2011 to 2020 standards), and adapt their programming practices accordingly. Detailed Program : Day 1 (Victor ALESSANDRINI) Review of some basic C++ concepts, overview of C++ as a software development environment, with two major software engineering strategies: object oriented programming and generic programming. Object oriented programming: the virtual function mechanism enabling late binding at execution time, (software modules calling newly written routines without recompilation). Examples of the power and relevance of virtual functions Function objects as extended pointers to functions, examples Introduction to generic programming: function templates, examples Day 2 (Victor ALESSANDRINI) Generic programming: class templates, examples The core of generic programming: using function and class templates to parameterize behavior rather than just object types Overview of the Standard Template Library (STL): strategies, containers, iterators, algorithms Concurrency in the standard C++ library: overview of the thread class, discussion of the new threading interfaces (futures, promises) enabling easy synchronization of simple concurrency patterns. Day 3 (David CHAMONT): modern C++ syntax Basic features: type inference, stronger typing, user-defined literals, uniform initialization, rvalue references, move semantics. Object features: member variables initialization, delegated and inherited constructors, explicit deletion and overriding of member functions. Generic features: static assertions, template variables and type aliasing, constant expressions, variadic templates, perfect forwarding.  Functional features: lambda functions. Day 4 (David CHAMONT): modern C++ library Basic tools: smart pointers (unique_ptr, shared_ptr), new collections (array, unordered maps), views (span, string_array), wrapper types (function, ref). Generic tools: type traits, sfinae, concepts. Functional tools: algebraic types (tuple, variant), monadic types (optional, future), ranges. Optimization and parallelization: beyond double, random numbers, chrono, execution policies, structures of arrays, co-routines. Prerequisites : Knowledge of classical (pre-11) C++ syntax, and basic experience in programming with C++ objects. Participants should be familiar with the following concepts: namespaces references, difference with pointers basic memory allocation (new and delete) Properties of C++ functions (default values, overloading) Basic understanding of error handling (exceptions) C++ classes, programming with objects, public derivation of classes Basic knowledge of templates https://events.prace-ri.eu/event/977/ 2020-10-05 07:30:00 UTC 2020-10-08 15:00:00 UTC [] [] [] workshops_and_courses [] []
  • Single-Cell RNA-Sequence Analysis

    5 - 8 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Single-Cell RNA-Sequence Analysis https://tess.elixir-europe.org/events/single-cell-rna-sequence-analysis We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-10-05 09:00:00 UTC 2020-10-08 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Omics Integration and Systems Biology

    5 - 9 October 2020

    Elixir node event
    Omics Integration and Systems Biology https://tess.elixir-europe.org/events/omics-integration-and-systems-biology-b893d425-4c37-4075-bd15-2da7d55aecf5 2020-10-05 09:00:00 UTC 2020-10-09 00:00:00 UTC [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq analysis using R

    5 - 9 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Single cell RNA-seq analysis using R https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-using-r This course covers the analysis of scRNA-seq data using R and command line tools. 2020-10-05 09:45:00 UTC 2020-10-09 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Introduction to Metabolomics for the Microbiologist

    7 - 9 October 2020

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist-5b05fb3a-a745-44e2-80ec-b515cec15eee This three-day course introduces how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course provides an overview of the metabolomics pipeline, experimental... 2020-10-07 09:15:00 UTC 2020-10-09 16:00:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology – ICSB 2020

    11 October 2020

    Farmington, United States of America

    COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology – ICSB 2020 https://tess.elixir-europe.org/events/combine-de-nbi-tutorial-modelling-and-simulation-tools-in-systems-biology-icsb-2020 2020-10-11 09:00:00 UTC 2020-10-11 17:00:00 UTC de.NBI Farmington, Farmington, United States of America Farmington Farmington Hartford County United States of America [] [] [] meetings_and_conferences [] []
  • [ONLINE] Parallel Programming Workshop (Train the Trainer) @ HLRS

    12 - 16 October 2020

    [ONLINE] Parallel Programming Workshop (Train the Trainer) @ HLRS https://tess.elixir-europe.org/events/online-parallel-programming-workshop-train-the-trainer-hlrs The Train the Trainer Program is provided in conjunction with the regular course Parallel Programming with MPI and OpenMP and Advanced Parallel Programming. Whereas the regular course teaches parallel programming, this program is an education for future trainers in parallel programming. Too few people can provide parallel programming courses on the level that is needed if scientists and PhD students want to learn how to parallelize a sequential application or to enhance parallel applications. Within Europe, currently only six PATC centres and several other national centres provide such courses on an European or national level. We would like to assist further trainers and centres to also provide such courses for whole Europe or at least within their countries. Prerequisites You are familiar with parallel programming with MPI and OpenMP on an advanced level and skilled in both programming languages C and Fortran. Your goal: You want to provide MPI and OpenMP courses for other scientists and PhD students in your country, i.e., you would like to provide at least the first three days of the regular course as a training block-course to PhD students. Background: (a) Your centre supports you to provide such PhD courses in a course room at your centre. The course room is equipped at least with one computer/laptop per two (or three) students and has access to a HPC resource that allows MPI and OpenMP programming in C and Fortran. Or (b), you as a future trainer would like to co-operate with a centre with the necessary course infrastructure. What does this Train the Trainer Program provide? We provide you with all necessary teaching material on a personal basis, i.e., with the copyright to use it and to provide pdf or paper copies to the students in your PhD courses. We provide all exercise material. You will listen the lectures that you get familiar with the training material. During the exercises, you will help the regular students to correct their errors. The regular students are advised to request help if they were stuck for more than a minute. You will be trained to detect their problems as fast as possible (typically in less than a minute) and to provide the students with the needed help.   The Train the Trainer Program includes the curriculum from Monday until Friday according the course agenda. The Train the Trainer Program starts on Monday with a short introductory meeting at 8:15 am. On Thursday evening we will have an additional meeting and dinner for all participants of this TtT program. For further information and registration please visit the HLRS course page. https://events.prace-ri.eu/event/1031/ 2020-10-12 06:15:00 UTC 2020-10-16 15:00:00 UTC [] [] [] workshops_and_courses [] []

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