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25 events found
Node: Switzerland
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ZIDAS 2021
27 September - 1 October 2021
ZIDAS 2021 https://2021.zidas.org/ https://tess.elixir-europe.org/events/zidas-2021 # ZIDAS 2021: switZerland’s Image and Data Analysis School - When: 27th September-1st October 2021 - Where: Online event - **Application deadline: 2021-07-01 (23:59 CET)** - Website: [https://2021.zidas.org](https://2021.zidas.org) ## About the school: This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples. ## Lectures on - Image Formation - Denoising - Segmentation - Reproducibility & Ethics ## Hands-ons with - ImageJ/Fiji Macros - GoogleColab for Python notebooks - ZeroCostDL4Mic - Ilastik ## Further tools and topics - Each day will feature 3 parallel sessions with demos of the awesome tools developed by the BioImage Analysis community such as #QuPath, #CLIJ, #CellProfiler, #TrackMate, #FigureJ, #StarDist and more! - This year will have a strong "work on your own project" component, so you can take advantage of all our great trainers to help you work with your own data! **_Find us at [https://2021.zidas.org](https://2021.zidas.org)_** 2021-09-27 09:00:00 UTC 2021-10-01 17:00:00 UTC ETHZ, EPFL ETH ZurichEPFL Center for Experimental and Clinical Imaging Technologies Zurich (EXCITE Zurich) Life Science ResearchersBiologists workshops_and_courses registration_of_interest image processingbioinformatics -
Introduction to high-performance computing (sciCORE cluster)
28 September 2021
Streamed from Basel, Switzerland
Introduction to high-performance computing (sciCORE cluster) https://www.sib.swiss/training/course/202109_sciCORE-IHPC https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-08f393f3-a813-4e56-a574-7e419ca77f34 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-09-28 09:00:00 UTC 2021-09-28 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
First Steps with Python in Life Sciences - streamed
29 September - 1 October 2021
Streamed from Basel and Lausanne, Switzerland
First Steps with Python in Life Sciences - streamed https://www.sib.swiss/training/course/20210929_PYTFS https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-streamed-fad56994-b647-446e-b022-090a6af0090b We are sorry but this course is oversubscribed, with a long waiting list. Sign up here to be informed of the next course. 2021-09-29 09:00:00 UTC 2021-10-01 00:00:00 UTC SIB, Streamed from Basel and Lausanne, Switzerland SIB Streamed from Basel and Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Introduction to Machine Learning with Python - streamed
4 - 5 October 2021
Streamed from Basel, Switzerland
Introduction to Machine Learning with Python - streamed https://www.sib.swiss/training/course/20211004_INMLP https://tess.elixir-europe.org/events/introduction-to-machine-learning-with-python This course is now full with a waiting list but will be given again in 2022. 2021-10-04 09:00:00 UTC 2021-10-05 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Version Control with Git - streamed
6 - 8 October 2021
Streamed from Lausanne, Switzerland
Version Control with Git - streamed https://www.sib.swiss/training/course/20211006_GIT https://tess.elixir-europe.org/events/version-control-with-git This course will be streamed only for the registered participants, who will receive specific information directly from the respective course’s organizers. 2021-10-06 09:00:00 UTC 2021-10-08 00:00:00 UTC SIB, Streamed from Lausanne, Switzerland SIB Streamed from Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Docker and Singularity for reproducible research: getting started with containers
14 October 2021
Bern or streamed, Switzerland
Docker and Singularity for reproducible research: getting started with containers https://www.sib.swiss/training/course/20211214_DOCK https://tess.elixir-europe.org/events/docker-and-singularity-for-reproducible-research-getting-started-with-containers-c19857f6-7765-4f0a-822a-8c6c38a1f095 Overview Reproducible analysis in bioinformatics goes beyond good documentation and sharing code. Often, analyses depend on an entire environment with many different programs, libraries and settings. 2021-10-14 09:00:00 UTC 2021-10-14 00:00:00 UTC SIB, Bern or streamed, Switzerland SIB Bern or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Docker and Singularity for reproducible research: getting started with containers - streamed
14 October 2021
Streamed from Bern, Switzerland
Docker and Singularity for reproducible research: getting started with containers - streamed https://www.sib.swiss/training/course/20211014_DOCK https://tess.elixir-europe.org/events/docker-and-singularity-for-reproducible-research-getting-started-with-containers-streamed This course is now full with a long waiting list. 2021-10-14 09:00:00 UTC 2021-10-14 00:00:00 UTC SIB, Streamed from Bern, Switzerland SIB Streamed from Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Advanced Technical Presentation 1: Core Techniques
18 October 2021
Blended - Streamed and videos, Switzerland
Advanced Technical Presentation 1: Core Techniques https://www.sib.swiss/training/course/20211018_PRES1 https://tess.elixir-europe.org/events/advanced-technical-presentation-1-core-techniques-b80c1e94-54f9-4e04-91cd-b5d1277a2870 Overview Presenting technical information to an audience is one of the hardest tasks any scientist can face. Presenting effectively is not a natural talent for most people. 2021-10-18 09:00:00 UTC 2021-10-18 00:00:00 UTC SIB, Blended - Streamed and videos, Switzerland SIB Blended - Streamed and videos Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Mining enzyme data in UniProtKB using Rhea - streamed
22 October 2021
Streamed from Grenoble and Geneva, Switzerland
Mining enzyme data in UniProtKB using Rhea - streamed https://www.sib.swiss/training/course/2021-10-rhea https://tess.elixir-europe.org/events/mining-enzyme-data-in-uniprotkb-using-rhea-streamed This course will be streamed only for registered participants. Registered participants will receive information from the course organizer in due time. 2021-10-22 09:00:00 UTC 2021-10-22 00:00:00 UTC SIB, Streamed from Grenoble and Geneva, Switzerland SIB Streamed from Grenoble and Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Mining enzyme data in UniProtKB using Rhea - streamed
22 October 2021
Streamed from Grenoble and Geneva, Switzerland
Mining enzyme data in UniProtKB using Rhea - streamed https://www.sib.swiss/training/course/20211022_RHEA https://tess.elixir-europe.org/events/mining-enzyme-data-in-uniprotkb-using-rhea-streamed-370e6f56-32fb-4f0e-9fa3-f973225a7879 This course will be streamed only for registered participants. Registered participants will receive information from the course organizer in due time. 2021-10-22 09:00:00 UTC 2021-10-22 00:00:00 UTC SIB, Streamed from Grenoble and Geneva, Switzerland SIB Streamed from Grenoble and Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Research Data Management and Data Management Plan
28 - 29 October 2021
Lausanne, Switzerland
Research Data Management and Data Management Plan https://www.sib.swiss/training/course/20211028_RDMP https://tess.elixir-europe.org/events/research-data-managment-and-data-management-plan We are sorry but this course is oversubscribed, with a long waiting list. You are welcome to register to the SIB courses mailing list to be informed of all future courses, as well as all important deadlines using the form here. 2021-10-28 09:00:00 UTC 2021-10-29 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
NGS - Quality control, Alignment, Visualisation
3 - 5 November 2021
Bern, Switzerland
NGS - Quality control, Alignment, Visualisation https://www.sib.swiss/training/course/20211103_NGS6 https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-bc83a158-63bc-43f4-9c62-a8a9b4bd1545 Please be aware that to comply with recent federal and cantonal recommendations, you will most probably have the obligation to present a COVID certificate to be able to attend the course. Take this into consideration before applying to this course. 2021-11-03 09:00:00 UTC 2021-11-05 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Single-cell Transcriptomics - streamed
8 - 10 November 2021
Bern or streamed, Switzerland
Single-cell Transcriptomics - streamed https://www.sib.swiss/training/course/20211108_ISCTR https://tess.elixir-europe.org/events/single-cell-transcriptomics-streamed-2d5e78ee-bc2b-4093-b3d7-57ccb1835353 Overview In contrast to the Bulk RNA sequencing used to quantify the abundance of gene and transcript expression at a whole population level, single-cell RNA sequencing (scRNAseq) allows researchers to study gene expression profile at a single cell 2021-11-08 09:00:00 UTC 2021-11-10 00:00:00 UTC SIB, Bern or streamed, Switzerland SIB Bern or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
UNIX scripting for Life Scientists
8 - 9 November 2021
Lausanne or streamed, Switzerland
UNIX scripting for Life Scientists https://www.sib.swiss/training/course/20211108_UNIXAD https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists-ce31f453-1655-4860-ab78-672cc3d7dcf4 Overview Scripting allows shell users to automate repetitive tasks, thus improving reproducibility, reducing the risk of errors, freeing time, and avoiding boredom. 2021-11-08 09:00:00 UTC 2021-11-09 00:00:00 UTC SIB, Lausanne or streamed, Switzerland SIB Lausanne or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Introduction to high-performance computing (sciCORE cluster)
10 November 2021
Basel, Switzerland
Introduction to high-performance computing (sciCORE cluster) https://www.sib.swiss/training/course/sciCORE-LinuxHPC-Nov2021 https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-258314f5-c22d-4dcf-97e4-9efff8baa9aa This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-11-10 09:00:00 UTC 2021-11-10 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Reproducible research and data analysis using Nextflow pipelines
15 - 18 November 2021
Streamed from Lausanne and Barcelona, Switzerland
Reproducible research and data analysis using Nextflow pipelines https://www.sib.swiss/training/course/20211115_NEXTF https://tess.elixir-europe.org/events/reproducible-research-and-data-analysis-using-nextflow-pipelines Overview Nextflow is a powerful polyglot workflow language that, provides a robust, scalable and reproducible way to run computational pipelines. 2021-11-15 09:00:00 UTC 2021-11-18 00:00:00 UTC SIB, Streamed from Lausanne and Barcelona, Switzerland SIB Streamed from Lausanne and Barcelona Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
First Steps in Parallelization with OpenMP
24 November 2021
Basel, Switzerland
First Steps in Parallelization with OpenMP https://www.sib.swiss/training/course/OpenMP-Basel2021Nov https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-ad9c6e36-8ddc-47b8-98e7-33547b450196 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. 2021-11-24 09:00:00 UTC 2021-11-24 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
First Steps in Parallelization with OpenMP - streamed
24 November 2021
Streamed from Basel, Switzerland
First Steps in Parallelization with OpenMP - streamed https://www.sib.swiss/training/course/20211124_OPEMP https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-45b442fd-4698-42c9-af20-13586a4e31ac Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. In order to benefit from this computational power, we need to devise programs explicitly written for parallel machines. 2021-11-24 09:00:00 UTC 2021-11-24 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Deep Learning for Life Sciences - fundamentals and applications
25 November 2021
Streamed, Switzerland
Deep Learning for Life Sciences - fundamentals and applications https://www.sib.swiss/training/course/20211125_DLFLS https://tess.elixir-europe.org/events/deep-learning-for-life-sciences-fundamentals-and-applications Overview The aim of this course is to familiarise the participants with the deep learning model and some of its applications in life sciences. 2021-11-25 09:00:00 UTC 2021-11-25 00:00:00 UTC SIB, Streamed, Switzerland SIB Streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Multivariate analysis for -omics data integration: principles and applications
29 November - 2 December 2021
Lyon, Switzerland
Multivariate analysis for -omics data integration: principles and applications https://www.sib.swiss/training/course/2021-11-DI https://tess.elixir-europe.org/events/multivariate-analysis-for-omics-data-integration-principles-and-applications This course will take place in Lyon with rules complying to COVID situation (distances and hygiene), but in the event of restrictions preventing the event to take place in person, the participants will be informed about a probable streamed version. 2021-11-29 09:00:00 UTC 2021-12-02 00:00:00 UTC SIB, Lyon, Switzerland SIB Lyon Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Multivariate analysis for -omics data integration: principles and applications
29 November - 2 December 2021
Lyon, Switzerland
Multivariate analysis for -omics data integration: principles and applications https://www.sib.swiss/training/course/20211129_DI https://tess.elixir-europe.org/events/multivariate-analysis-for-omics-data-integration-principles-and-applications-1316ecac-0dfc-4839-b5e9-fcea597e96a3 This course will take place in Lyon with rules complying to COVID situation (COVID certificate, distances and hygiene). More details in the Additional Information section below. 2021-11-29 09:00:00 UTC 2021-12-02 00:00:00 UTC SIB, Lyon, Switzerland SIB Lyon Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Enrichment Analysis
3 December 2021
Lausanne or Streamed, Switzerland
Enrichment Analysis https://www.sib.swiss/training/course/20211203_ENRIC https://tess.elixir-europe.org/events/enrichment-analysis-d41a6c02-b748-45e0-913a-b349661ead77 Overview Experiments designed to quantify gene expression often yield hundreds of genes that show statistically significant differences between two classes (two biological states, two phenotype states, two experimental conditions, etc). 2021-12-03 09:00:00 UTC 2021-12-03 00:00:00 UTC SIB, Lausanne or Streamed, Switzerland SIB Lausanne or Streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Introduction to high-performance computing (sciCORE cluster)
8 December 2021
Streamed from Basel, Switzerland
Introduction to high-performance computing (sciCORE cluster) https://www.sib.swiss/training/course/202112_sciCORE-IHPC https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-1113385d-e02b-4d19-a4bf-c94f67c30812 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-12-08 09:00:00 UTC 2021-12-08 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Statistics and Machine Learning for Life Sciences - streamed
9 - 10 December 2021
Streamed from Basel, Switzerland
Statistics and Machine Learning for Life Sciences - streamed https://www.sib.swiss/training/course/20211209_STAML https://tess.elixir-europe.org/events/statistics-and-machine-learning-for-life-sciences-6cd03f39-e452-420b-afb2-8212be992b1a Overview Statistics are an integral aspect of scientific research, and in particular of life sciences that heavily rely on quantitative methodologies. 2021-12-09 09:00:00 UTC 2021-12-10 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Ligand-protein docking, and computer-aided drug design
13 - 15 December 2021
Basel, Switzerland
Ligand-protein docking, and computer-aided drug design https://www.sib.swiss/training/course/20211213_CADD https://tess.elixir-europe.org/events/ligand-protein-docking-and-computer-aided-drug-design-streamed Overview This workshop aims to present basics on molecular visualization, ligand-protein docking and several computer-aided drug design tools developed at SIB. Numerous case examples are taken from different therapeutic fields. 2021-12-13 09:00:00 UTC 2021-12-15 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
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