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217 events found
  • Computing Skills for Reproducible Research: Software Carpentry Course 2020

    19 - 23 October 2020

    Computing Skills for Reproducible Research: Software Carpentry Course 2020 https://tess.elixir-europe.org/events/computing-skills-for-reproducible-research-software-carpentry-course-2020 Educators: Renato Alves (HD-HuB) Date: 19-10-2020 - 23-10-2020 09:00-18:00 Location: Online Contents: Computation is an integral part of today's research as data has grown too large or too complex to be analysed by hand. An ever-growing fraction of science is performed computationally and many wet-lab biologists spend part of their time on the computer. Many scientists struggle with this aspect of research as they have not been properly trained in the necessary set of skills. The result is that too much time is spent using inefficient tools when progress could be faster. This course provides training in several key tools, with a focus on good development practices that encourage efficient and reproducible research computing. Topics covered include: Introduction to Python scripting Introduction to the Unix shell and usage of cluster resources Version control with Git and Github Analysis pipeline management Scientific Python & working with biological data Literate programming with Jupyter notebooks Learning goals: This course aims to teach software writing skills and best practices to researchers in biology who wish to analyse data, and to introduce a toolset that can help them in their work. The goal is to enable them to be more productive and to make their science better and more reproducible. Prerequisites: This is a course for researchers in the life sciences who are using computers for their analyses, even if not full time. The target student will be familiar with some command line/programmatic computer usage, will want to become more confident using these tools efficiently and reproducibly. A target student will have written a for loop in some language before, but will not know what git is (or at least not be very comfortable using git). Keywords: Programming; Command Line; Version Control; Bioinformatics; Data Analysis; Cluster Computing Tools: Python; Bash; Unix/Linux; Git; GitHub; SnakeMake; Biopython; Pandas; Numpy; SciPy; Matplotlib 2020-10-19 09:00:00 UTC 2020-10-23 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Image processing for correlated and multimodal imaging techniques

    19 October 2020 - 9 March 2021

    Elixir node event
    Image processing for correlated and multimodal imaging techniques https://tess.elixir-europe.org/events/image-processing-for-correlated-and-multimodal-imaging-techniques The purpose of this event is to dedicate three days of intense training to an audience with little or basic expertise. The program will first cover a full day of online lectures (19 October 2020), followed by two days of hands-on training (8 & 9 March 2021, Ghent). 2020-10-19 09:00:00 UTC 2021-03-09 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Singel Cell Analysis course

    19 - 23 October 2020

    Online, Online

    Elixir node event
    Singel Cell Analysis course https://tess.elixir-europe.org/events/singel-cell-analysis-course This week-long course organised by the MGC will cover the practicalities of single-cell sample prep and analysis with a particular focus on single-cell RNA-seq libraries. The course features a mix of lectures and practicals, and you will have the opportunity… The post Singel Cell Analysis course appeared first on Dutch Techcentre for Life Sciences. 2020-10-19 09:00:00 UTC 2020-10-23 00:00:00 UTC Online, Online, Online Online Online Online [] [] [] workshops_and_courses [] []
  • Gateways 2020

    19 - 22 October 2020

    Gateways 2020 https://tess.elixir-europe.org/events/gateways-2020 2020-10-19 09:00:00 UTC 2020-10-22 00:00:00 UTC [] Enis Afgan, Dave Clements [] [] [] [] []
  • NBIS Course Uppsala: Python programming with applications to bioinformatics

    19 - 24 October 2020

    Uppsala, Sweden

    Elixir node event
    NBIS Course Uppsala: Python programming with applications to bioinformatics https://tess.elixir-europe.org/events/nbis-course-uppsala-python-programming-with-applications-to-bioinformatics-6f01780c-fd8b-411e-8c7c-95250e6bb979 #training #url: https://www.scilifelab.se/event/python-programming-with-applications-to-bioinformatics-uppsala-2 email: edu.intro-python@nbis.se  2020-10-19 09:00:00 UTC 2020-10-24 00:00:00 UTC Uppsala, Sweden Uppsala Sweden [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • NBIS Course Umeå: Python programming with applications to bioinformatics, Umeå

    19 - 24 October 2020

    Glasburen

    Elixir node event
    NBIS Course Umeå: Python programming with applications to bioinformatics, Umeå https://tess.elixir-europe.org/events/nbis-course-umea-python-programming-with-applications-to-bioinformatics-umea-907bf717-7d0a-48d3-b284-1d050de6358d #training #url: https://www.scilifelab.se/event/python-programming-with-applications-to-bioinformatics-umea-2 email: edu.intro-python@nbis.se   2020-10-19 09:00:00 UTC 2020-10-24 00:00:00 UTC Glasburen Glasburen [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • Introduction to parallel programming @ UL

    20 - 23 October 2020

    Introduction to parallel programming @ UL https://tess.elixir-europe.org/events/introduction-to-parallel-programming-2f81120c-c12b-44ac-a2c2-bff2a21d8dc5 First part of this course (Day 1&2) is part of Slovenian EuroHPC Competence Centre training event. The second part of this course (Day 3&4) is a PRACE training event. Event is organized by LECAD Laboratory, University of Ljubljana, Slovenia. Participation is free of charge! In case of too many registrations (over 70) we will make a selection of registrants. In light of COVID-19 situation, this will be an online event. https://events.prace-ri.eu/event/1049/ 2020-10-20 06:00:00 UTC 2020-10-23 15:00:00 UTC [] [] [] workshops_and_courses [] []
  • ReproHack - A hackaton on reproducible data analysis

    20 October 2020

    Elixir node event
    ReproHack - A hackaton on reproducible data analysis https://tess.elixir-europe.org/events/reprohack-a-hackaton-on-reproducible-data-analysis During a ReproHack, participants attempt to reproduce published research of their choice from a list of proposed papers with publicly available associated code and data. This approach should provide a low-pressure environment to actually get working with other people's code and data. Besides evaluating the analysis of papers, this hackaton is also about working together, networking and learning from each other!  Disclaimer: It’s imperative to note that this event is by no means an attempt to criticize or discredit work. We see reproduction as beneficial scientific activity in itself, with useful outcomes for authors and valuable learning experiences for the participants and the research community as a whole. Nominate a paper We accept nominations from anyone. Both researchers that have submitted a paper and would like to test whether one of your own papers is reproducible, and researchers that want to dig into the code of another paper! Either way, we encourage proponents to seek consent from the original authors for their nominations. Nominate a paper via this link. The papers will be assembled and showcased before selection via this link.  Register as participant Join us at the hack to dig into exciting science, learn more about reproducibility, working with other people's code and data and more. 2020-10-20 09:00:00 UTC 2020-10-20 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to Shiny

    20 - 21 October 2020

    Introduction to Shiny https://tess.elixir-europe.org/events/creating-scientific-figures For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2020-10-20 09:30:00 UTC 2020-10-21 12:00:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Data visualisation at PDBe

    20 October 2020

    Elixir node event
    Data visualisation at PDBe https://tess.elixir-europe.org/events/data-visualisation-at-pdbe This webinar will introduce some of the data visualisations available from PDBe, how to add these to your own website and how to customise them for your own requirements. There will also be specific case studies that demonstrate how these visualisations can be used and implemented. 2020-10-20 15:30:00 UTC 2020-10-20 16:30:00 UTC [] Anna Swan [] [] [] [] HDRUK
  • [ONLINE] ChEESE Advanced Training on HPC for Computational Seismology @ HLRS

    21 - 23 October 2020

    [ONLINE] ChEESE Advanced Training on HPC for Computational Seismology @ HLRS https://tess.elixir-europe.org/events/online-cheese-advanced-training-on-hpc-for-computational-seismology-hlrs Overview August 3: Note: Due to the COVID-19 pandemic we currently plan to provide this course as an ONLINE course (using Zoom). Are you interested in numerical wave simulations but feel like there are too many codes and methods out there and don’t know which option is right for you? Or, perhaps you just want to refresh your knowledge and gain some practical experience with the different possibilities? Either way, this fully virtual workshop is for you! During three full days on 21- 23 October 2020, you will receive introductory hands-on tutorials for ExaHyPE, Salvus, SeisSol, and SPECFEM3D, which are four different high-performance computational seismology software packages focused on waveform modeling and inversion. The workshop will provide you with an overview of their similarities, differences, and areas of applicability. Unique and in-depth half-day practicals will be provided for each package, with computational resources provided by HLRS. Participants will also be encouraged to present their own work and/or motivation as a one-minute lightning-talk during the wrap-up session of the workshop. This training event is hosted by ChEESE, the Center of Excellence for Exascale in Solid Earth and supported by the ENERXICO project. The organizers look forward to seeing you in October! Target audience Researchers and students of all levels interested in augmenting their science with numerical waveform and dynamic rupture simulations as well as full-waveform inversion.   For further information and registration please visit the HLRS course page. https://events.prace-ri.eu/event/1046/ 2020-10-21 07:00:00 UTC 2020-10-23 15:00:00 UTC [] [] [] workshops_and_courses [] []
  • ELIXIR Norway All Hands Meeting 2020

    21 - 23 October 2020

    Elixir node event
    ELIXIR Norway All Hands Meeting 2020 https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2020 Yearly gathering of all hands involved in ELIXIR Norway, including our SAC and stakeholder panel. This year's meeting will be all digital. Registration here by 2 October: https://forms.gle/hprhrTnthstT46E37 2020-10-21 09:00:00 UTC 2020-10-23 16:00:00 UTC ELIXIR Norway Digital, Trondheim, Norway Digital Trondheim Norway [] christine.stansberg@uib.no [] [] meetings_and_conferences [] []
  • [POSTPONED] Introduction to Deep Learning Models @ JSC

    21 - 23 October 2020

    [POSTPONED] Introduction to Deep Learning Models @ JSC https://tess.elixir-europe.org/events/introduction-to-deep-learning-models-jsc This course has to be postponed to 2021. This course focuses on a recent machine learning method known as deep learning that emerged as a promising disruptive approach, allowing knowledge discovery from large datasets in an unprecedented effectiveness and efficiency. It is particularly relevant in research areas, which are not accessible through modelling and simulation often performed in HPC. Traditional learning, which was introduced in the 1950s and became a data-driven paradigm in the 90s, is usually based on an iterative process of feature engineering, learning, and modelling. Although successful on many tasks, the resulting models are often hard to transfer to other datasets and research areas. This course provides an introduction into deep learning and its inherent ability to derive optimal and often quite generic problem representations from the data (aka ‘feature learning’). Concrete architectures such as Convolutional Neural Networks (CNNs) will be applied to real datasets of applications using known deep learning frameworks such as Tensorflow, Keras, or Torch. As the learning process with CNNs is extremely computational-intensive the course will cover aspects of how parallel computing can be leveraged in order to speed-up the learning process using general purpose computing on graphics processing units (GPGPUs). Hands-on exercises allow the participants to immediately turn the newly acquired skills into practice. After this course participants will have a general understanding for which problems CNN learning architectures are useful and how parallel and scalable computing is facilitating the learning process when facing big datasets. Prerequisites: Participants should be able to work on the Unix/Linux command line, have a basic level of understanding of batch scripts required for HPC application submissions, and have a minimal knowledge of probability, statistics, and linear algebra. Participants should bring their own notebooks (with an ssh-client). Application Applicants will be notified one month before the course starts, whether they are accepted for participitation. Instructors: Prof. Dr. Morris Riedel, Dr. Gabriele Cavallaro, Dr. Jenia Jitsev, Jülich Supercomputing Centre Contact For any questions concerning the course please send an e-mail to g.cavallaro@fz-juelich.de. https://events.prace-ri.eu/event/983/ 2020-10-21 11:00:00 UTC 2020-10-23 14:30:00 UTC [] [] [] workshops_and_courses [] []
  • [ONLINE] GPU Programming with OpenACC @ CSC

    22 - 23 October 2020

    [ONLINE] GPU Programming with OpenACC @ CSC https://tess.elixir-europe.org/events/online-gpu-programming-with-openacc-csc This course will be delivered as an ONLINE COURSE for remote participation  due to the COVID-19 measures enforced by most European governments. Description This course gives a thorough introduction to programming GPUs using the directive based OpenACC paradigm. The course consists of lectures and hands-on exercises. Topics of this course include the basic usage of OpenACC, as well as some more advanced issues related to profiling, performance and interoperability with CUDA and MPI. Learning outcome After the course the participants should have the basic skills needed for utilizing OpenACC in new, or existing programs. Prerequisites The participants are assumed to have working knowledge of Fortran and/or C programming languages. In addition, fluent operation in a Linux/Unix environment will be assumed. Agenda Day 1, Thursday 22.10 09:00 - 12:00 SESSION 1 & Coffee break (10:00 -10:15) Introduction to accelerators​ Introduction to OpenACC Exercises 12:00 - 13:00 Lunch 13:00 - 16:00 SESSION 2 & Coffee break (14:15-14:30) Data movement Exercises Day 2, Friday 23.10 09:00 - 12:00 SESSION 3 & Coffee break (10:15-10:30) Profilling Performance considerations Exercises 12:00 - 13:00 Lunch 13:00 - 16:00 SESSION 4 & Coffee break (14:00-14:15) Asynchronous operations and pipelining Interoperability with CUDA and GPU-Accelerated libraries Exercises Lecturers:  Martti Louhivuori (CSC), George Markomanolis (CSC) Language:  English Price:          Free of charge (2 training days) Important information We will use ZOOM for this online course. To ensure a pleasant experience with ZOOM, we encourage participants to download and install the latest ZOOM client beforehand.    To download and install the ZOOM client please visit https://zoom.us/download. It is not necessary to create a ZOOM account to participate. Connection details will be provided later. https://events.prace-ri.eu/event/1073/ 2020-10-22 06:00:00 UTC 2020-10-23 13:00:00 UTC [] [] [] workshops_and_courses [] []
  • CABANA Train the Trainer Workshop for ISCB-Latin America 2020

    22 - 23 October 2020

    United Kingdom

    Elixir node event
    CABANA Train the Trainer Workshop for ISCB-Latin America 2020 https://tess.elixir-europe.org/events/cabana-train-the-trainer-workshop-for-iscb-latin-america-2020 This virtual workshop will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. 2020-10-22 09:00:00 UTC 2020-10-23 13:00:00 UTC Virtual format, United Kingdom Virtual format United Kingdom [] Patricia Carvajal Lopez [] [] [] [] HDRUK
  • Basic statistics in R, online

    23 October - 20 November 2020

    Elixir node event
    Basic statistics in R, online https://tess.elixir-europe.org/events/basic-statistics-in-r-autumn-session This training gives an introduction to the use of the free statistical software language R. This introduction is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2020-10-23 09:00:00 UTC 2020-11-20 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • [ONLINE] Tools and techniques to quickly improve performances of HPC applications in Solid Earth@Cineca

    26 - 28 October 2020

    [ONLINE] Tools and techniques to quickly improve performances of HPC applications in Solid Earth@Cineca https://tess.elixir-europe.org/events/tools-and-techniques-to-quickly-improve-performances-of-hpc-applications-in-solid-earth-cineca It will  shown a course targeted to improve the overall performance of a code in Solid Earth, currently in use at the CHEESE Center of Excellence H2020 project. First, parallel performance profiling tools will be provided on the initial version of the code to find the so-called performance bottlenecks. Starting from the profiling analysis, it will show how and where to intervene with respect to the hardware characterization of the HPC machine used for the investigation. We will show also how debug tools will be useful in the development / optimization phase to eliminate any possible bugs introduced in the writing (or redesign) of new parts of the code. Finally, it will be shown how to improve the overall performance of the code with respect to other popular parameters such as I / O, vectorization, etc. Skills: At the end of the course the student will be able to: use a concrete methodology to improve the performance of a code in Solid Earth already in use in the context of ChEESE project find and solve all the main bottlenecks of an application with respect to appropriate computational metrics and the machine used use appropriate debugging tools to eliminate any bugs that may arise during the development / optimization phase Target audience:  Researchers in Solid Earth interested to learn and use all those techniques and related tools that may allow them to improve the performance of their code on current HPC architectures in the shortest possible time. Pre-requisites: Basic knowledge of LINUX/UNIX. Knowledge of C, FORTRAN, MPI or OpenMP is recommended. Notions of Parallel computing techniques and algorithms for Solid Earth applications Grant: The lunch for the three days will be offered to all the participants and some grants are available. The only requirement to be eligible is to be not funded by your institution to attend the course and to work or live in an institute outside the Roma area. The grant  will be 300 euros for students working and living outside Italy and 150 euros for students working and living in Italy (outside Roma). Some documentation will be required and the grant will be paid only after a certified presence of minimum 80% of the lectures. Further information about how to request the grant, will be provided at the confirmation of the course: about 3 weeks before the starting date. Coordinating Teacher: Dr. P. Lanucara   https://events.prace-ri.eu/event/973/ 2020-10-26 08:00:00 UTC 2020-10-28 17:00:00 UTC [] [] [] workshops_and_courses [] []
  • [ONLINE] High-performance scientific computing in C++ @ JSC

    26 - 29 October 2020

    [ONLINE] High-performance scientific computing in C++ @ JSC https://tess.elixir-europe.org/events/high-performance-scientific-computing-in-c-jsc-7577a0b2-ea9c-4d4d-831c-b75adb7ec714 Modern C++, with its support for procedural, objected oriented, generic and functional programming styles, offers many powerful abstraction mechanisms to express complexity at a high level while remaining very efficient. It is therefore the language of choice for many scientific projects. However, achieving high performance by today's standards requires understanding and exploiting multiple levels of parallelism, and understanding C++ code from a performance centric viewpoint. In this course, the participants will learn how to write C++ programs which better utilize typical HPC hardware resources of the present day. The course is geared towards scientists and engineers already familiar with C++17 (at the very least C++14), who wish to develop maintainable and fast applications. They will learn techniques to better utilize CPU caches, instruction pipelines, SIMD functionality and multi-threading. Shared memory parallel programming on multiple CPU cores will be introduced using parallel STL of C++17 and Intel (R) Threading Building Blocks. The participants will also learn basic GPGPU programming in C++ using NVidia CUDA and Thrust. Prerequisites: Good working knowledge of C++, especially the C++14 standard. Please check with these questions whether your C++ knowlegde fulfills the requirements. Application Registrations are only considered until 16 October 2020, the maximal number of participants is limited. Applicants will be notified, whether they are accepted for participitation. Instructor: Dr. Sandipan Mohanty, JSC Contact For any questions concerning the course please send an e-mail to s.mohanty@fz-juelich.de This course was originally planned for 15-17 June 2020 as an in-person course. https://events.prace-ri.eu/event/984/ 2020-10-26 08:00:00 UTC 2020-10-29 15:30:00 UTC [] [] [] workshops_and_courses [] []
  • ARDC’s Australian eResearch and Data Skills Summit 2020

    26 - 30 October 2020

    Australia

    ARDC’s Australian eResearch and Data Skills Summit 2020 https://tess.elixir-europe.org/events/ardc-s-australian-eresearch-and-data-skills-summit-2020 2020-10-26 09:00:00 UTC 2020-10-30 17:00:00 UTC ARDC Australia Australia Bioinformatics [] [] [] [] [] bioinformaticslife sciences
  • Containers and Workflow Pipelines for reproducible and automated data analysis

    26 - 27 October 2020

    Elixir node event
    Containers and Workflow Pipelines for reproducible and automated data analysis https://tess.elixir-europe.org/events/containers-and-workflow-pipelines-for-reproducible-and-automated-data-analysis-7a613826-6388-464d-858a-b4dce0da9e43 Containers Learn the concept of and the difference between Docker & Singularity containers  Write a Docker recipe, build and run a Docker image and containers Pull and push Docker container to / from Docker hub Docker files and layers; Docker cashing Working with volumes Pull Docker containers as a Singularity image Pipelines Understand Nextflow's basic concepts: processes, channels, ... Write and run a Nextflow pipeline (using a Singularity containers) 2020-10-26 09:00:00 UTC 2020-10-27 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • GWAS Analysis with Galaxy on the Analysis Visualization Integrated Lab-space (AnVIL)

    27 October - 1 November 2020

    GWAS Analysis with Galaxy on the Analysis Visualization Integrated Lab-space (AnVIL) https://tess.elixir-europe.org/events/gwas-analysis-with-galaxy-on-the-analysis-visualization-integrated-lab-space-anvil 2020-10-27 09:00:00 UTC 2020-11-01 00:00:00 UTC [] Dave Clements, Alex Ostrovsky [] [] [] [] []
  • First steps with R in Life Sciences

    27 - 28 October 2020

    Lausanne, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-009cd52b-e152-423a-8888-02c096d98fc5 This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2020-10-27 09:00:00 UTC 2020-10-28 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single cell RNA-seq data analysis with Chipster

    28 October 2020

    Elixir node event
    Single cell RNA-seq data analysis with Chipster https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis-with-chipster This two half-days practical course (October 27, October 28) is aimed to introduce single cell RNA-seq data analysis methods, tools and file formats. It covers the process of transcript counts from quality control and filtering to dimensional reduction, clustering, and differential expression analysis. In addition, it will cover how to do integrated analysis of two samples. 2020-10-28 09:00:00 UTC 2020-10-28 00:00:00 UTC Online Online [] [] [] [] [] []
  • [ONLINE] Data Management with iRODS and Compute @SURFsara

    29 October 2020

    [ONLINE] Data Management with iRODS and Compute @SURFsara https://tess.elixir-europe.org/events/data-management-with-irods-and-compute-surfsara-11cb4922-2fd9-4e88-b5b0-1930d3c1afba Would you want to practice reproducible research in HPC and preserve your data for the future? Research Data Management is essential in effective and reproducible science. Due to ever increasing data volumes and complexity, researchers need modern tools to manage all stages of the data life cycle. Here we will use iRODS, a data management framework, to incorporate data management principles in compute pipelines.  What? In this course you will: - Learn about the the iRODS data management framework and icommands - Understand how to incorporate provenance in a compute workflow - Know about FAIR in data processing workflows Who? - Everyone interested in learning advanced data management tools for compute and data processing workflows Requirements - Basic knowledge of Linux and shell commands You should have - Your own laptop with an up-to-date browser and a terminal emulator. The use of the operating systems Linux and macOS is preferred, but not mandatory. For Windows users we recommend to download MobaXterm (portable version) as terminal emulator.   IMPORTANT INFORMATION: WAITING LIST If the course gets fully booked, no more registrations are accepted through this website. However, you can be included in the waiting list: for that, please send an email to training@surfsara.nl and you'll be informed when a place becomes available. https://events.prace-ri.eu/event/1058/ 2020-10-29 08:00:00 UTC 2020-10-29 16:30:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction to Protein Structure Analysis, autumn session

    29 October 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, autumn session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-autumn-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-10-29 09:00:00 UTC 2020-10-29 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Next Generation Sequencing (NGS) Introduction

    29 October - 1 November 2020

    Next Generation Sequencing (NGS) Introduction https://tess.elixir-europe.org/events/next-generation-sequencing-ngs-introduction-6fd68d37-de2d-4df2-b22c-87bbb1ea9e1d 2020-10-29 09:00:00 UTC 2020-11-01 00:00:00 UTC [] Sijung Yun [] [] [] [] []
  • ELIXIR Bioinformatics Industry Forum: Commercialisation of Research in Bioinformatics

    29 October 2020

    ELIXIR Bioinformatics Industry Forum: Commercialisation of Research in Bioinformatics https://tess.elixir-europe.org/events/elixir-bioinformatics-industry-forum-commercialisation-of-research-in-bioinformatics The ELIXIR Bioinformatics Industry Forum webinar on commercialisation of research in bioinformatics will discuss the interface between academic research, technology transfer, business and public-private partnerships. With a particular focus on the data-driven life science sector, we will explore the motivations behind commercialisation, and discuss opportunities and lessons learnt. Alessandro Riccombeni (AWS) and Gareth Conduit (Intellegens) will not only guide us through the practicalities and technical aspects of commercialising your research but also immerse us into exploring the transition on a more personal level.  This event will be video recorded.   2020-10-29 16:00:00 UTC 2020-10-29 17:30:00 UTC [] [] [] [] [] []
  • Introduction to Scientific Figure Design (ONLINE LIVE TRAINING)

    30 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Scientific Figure Design (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-scientific-figure-design-online-live-training PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team will be teaching the course live online in conjunction with the presenters. This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Further information and access to the course materials is [here](http://www.bioinformatics.babraham.ac.uk/training.html#figuredesign). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3566463&course-title=Introduction%20to%20Scientific%20Figure%20Design).'' 2020-10-30 09:30:00 UTC 2020-10-30 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Bioinformatics & Functional Genomics in Zebrafish

    2 - 5 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics & Functional Genomics in Zebrafish https://tess.elixir-europe.org/events/bioinformatics-functional-genomics-in-zebrafish-ff8f3fea-a89e-4b25-93b1-111191cae4b7 This course has been designed specifically for researchers working within the Zebrafish community, providing an introduction and practical knowledge of tools and resources for working with functional genomics data. 2020-11-02 09:00:00 UTC 2020-11-05 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Metagenomics bioinformatics

    2 - 6 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics-91c48308-c2e6-48eb-b1ea-113f79da1edd This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including marker gene, whole gene shotgun (WGS) and assembly-based approaches. 2020-11-02 09:00:00 UTC 2020-11-06 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK

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