255 events found
  • Bioinformatics for Discovery

    22 - 23 January 2019

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-d559ad52-4eda-438d-95b9-40e4bfcf0b59 A Master’s level short course aimed at providing discovery scientists from a range of fields (e.g. agri-food, pharma and consumer goods) with the skills and knowledge required to apply bioinformatics techniques in their everyday work. 2019-01-22 10:00:00 UTC 2019-01-23 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 2 Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] []
  • Python in High-Performance Computing @ CSC

    23 - 25 January 2019

    Python in High-Performance Computing @ CSC https://tess.elixir-europe.org/events/python-in-high-performance-computing-csc-8f13c25c-4980-4639-8034-2e2a7c78d8d9 Thank you to those of you who have already registered for our "Python in High-Performance Computing @ CSC" training course! The course is now FULLY BOOKED! Due to the popularity of the Python course we are now operating a limited waiting list, 10 persons max. So, if you have registered to this course and you are not able to attend, please CANCEL your registration in advance by sending an email to patc at csc.fi. If you wish to be added to the waiting list please contact to patc at csc.fi. You will be notified via e-mail of your position on the waiting list. We will keep you further informed of whether you are enrolled into the course or not. Please note that the waiting list is handled on a first come/first serve basis. Welcome to the course! Description Python programming language has become popular in scientific computing due to many benefits it offers for fast code development. Unfortunately, the performance of pure Python programs is often sub-optimal, but fortunately this can be easily remedied. In this course we teach various ways to optimise and parallelise Python programs. Among the topics are performance analysis, efficient use of NumPy arrays, extending Python with more efficient languages (Cython), and parallel computing with  message passing (mpi4py) approach. Learning outcome After the course participants are able to analyse performance of Python program and use NumPy more efficiently optimize Python programs with Cython utilize external libraries in Python programs write simple parallel programs with Python Prerequisites Participants need some experience in Python programming, but expertise is not required. One should be familiar with Python syntax Basic builtin datastructures (lists, tuples, dictionaries) Control structures (if-else, for, while) Writing functions and modules Some previous experience on NumPy will be useful, but not strictly required. Agenda Day 1, Wednesday 23.1 Efficient use of NumPy Performance analysis Day 2, Thursday 24.1 Optimisation with Cython Interfacing with external libraries Day 3, Friday 25.1 Parallel computing with mpi4py Lecturers:  Jussi Enkovaara (CSC), Martti Louhivuori (CSC) Language:   EnglishPrice:          Free of charge https://events.prace-ri.eu/event/806/ 2019-01-23 07:00:00 UTC 2019-01-25 14:00:00 UTC [] [] [] workshops_and_courses [] []
  • Cloud Resource Federation for Galaxy

    23 - 24 January 2019

    Cloud Resource Federation for Galaxy https://tess.elixir-europe.org/events/cloud-resource-federation-for-galaxy 2019-01-23 09:00:00 UTC 2019-01-24 00:00:00 UTC [] Enis Afgan [] [] [] [] []
  • Bioinformatics for Discovery

    23 January 2019

    Hinxton, United Kingdom

    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-f51fe25c-6f52-4589-b79c-5f829803f89a In this 90 min long tutorial, we will introduce the Open Targets and its other tools to aid drug target identification and prioritisation. This workshop is part of the Bioinformatics for Discovery course and is aimed at bench biologists working in the area of discovery science who want to learn more about bioinformatics tools and resources. No prior knowledge of bioinformatics is required and no experience of programming or the use of Unix / Linux is necessary. . 2019-01-23 09:00:00 UTC 2019-01-23 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Software Carpentry - Stanford University

    23 - 24 January 2019

    Software Carpentry - Stanford University https://tess.elixir-europe.org/events/software-carpentry-stanford-university-070a351a-e397-4a17-93c4-c93fa5aaf666 Find out more at https://cengel.github.io/2019-01-23-stanford/ 2019-01-23 09:00:00 UTC 2019-01-24 00:00:00 UTC Software Carpentry Stanford University Stanford University [] [] [] workshops_and_courses [] []
  • Exploring, visualising and analysing proteomics data in R

    24 January 2019

    Cambridge, United Kingdom

    Elixir node event
    Exploring, visualising and analysing proteomics data in R https://tess.elixir-europe.org/events/exploring-visualising-and-analysing-proteomics-data-in-r This course will present a set of R/Bioconductor packages to access, manipulate, visualise and analyse mass spectrometry (MS) and quantitative proteomics data. The training room is located on the first floor and there is currently no level access. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2759559&course-title=Exploring%20Visualising%20and%20analysing%20proteomics%20data%20in%20R).'' 2019-01-24 09:30:00 UTC 2019-01-24 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Proteomics Data visualisation Biology Bioinformatics University of Cambridge Bioinformatics Training [] The course is targeted to either proteomics practitioners or data analysts/bioinformaticians that would like to learn how to use R to analyse proteomics data. Familiarity with mass spectrometry or proteomics in general is desirablebut not essential as we will walk through a MS typical experiment and data as part of learning about the tools.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] []
  • Software Carpentry - Swarthmore College

    26 - 27 January 2019

    Software Carpentry - Swarthmore College https://tess.elixir-europe.org/events/software-carpentry-swarthmore-college Find out more at https://timothylwarren.github.io/2019-01-26-swarthmore/ 2019-01-26 09:00:00 UTC 2019-01-27 00:00:00 UTC Software Carpentry Swarthmore College Swarthmore College [] [] [] workshops_and_courses [] []
  • Introduction to Hybrid Programming in HPC @ LRZ

    28 - 29 January 2019

    Introduction to Hybrid Programming in HPC @ LRZ https://tess.elixir-europe.org/events/introduction-to-hybrid-programming-in-hpc-lrz-112b005c-321c-495b-be52-91b7f62fe4a4 Overview Most HPC systems are clusters of shared memory nodes. Such SMP nodes can be small multi-core CPUs up to large many-core CPUs. Parallel programming may combine the distributed memory parallelization on the node interconnect (e.g., with MPI) with the shared memory parallelization inside of each node (e.g., with OpenMP or MPI-3.0 shared memory). This course analyzes the strengths and weaknesses of several parallel programming models on clusters of SMP nodes. Multi-socket-multi-core systems in highly parallel environments are given special consideration. MPI-3.0 has introduced a new shared memory programming interface, which can be combined with inter-node MPI communication. It can be used for direct neighbor accesses similar to OpenMP or for direct halo copies, and enables new hybrid programming models. These models are compared with various hybrid MPI+OpenMP approaches and pure MPI. Numerous case studies and micro-benchmarks demonstrate the performance-related aspects of hybrid programming. Hands-on sessions are included on both days. Tools for hybrid programming such as thread/process placement support and performance analysis are presented in a "how-to" section. This course provides scientific training in Computational Science, and in addition, the scientific exchange of the participants among themselves. The course is a PRACE Advanced Training Center event. It is organized by LRZ in cooperation with HLRS, RRZE, and VSC (Vienna Scientific Cluster). Agenda & Content (preliminary) 1st day 09:30 Registration 10:00 Welcome 10:05 Motivation 10:15 Introduction 10:45 Programming Models            - Pure MPI 11:15 Coffee Break 11:35  - Topology Optimization 12:00    Practical (application aware Cartesian topology) 13:00 Lunch 14:00  - MPI + MPI-3.0 Shared memory 14:45    Practical (replicated data) 15:30 Coffee Break 15:50  - MPI Memory Models and Synchronization 16:50    Practical (substituting pt-to-pt by shared memory) 17:30    Practical (substituting barrier synchronization by pt-to-pt) 18:00 End Social Event (self paying) 2nd day 09:00 Programming Models (continued)            - MPI + OpenMP 10:00     Practical (how to compile and start) 10:30 Coffee Break 10:50  - Example with Jacobi Solver 11:00     Practical (hybrid through OpenMP parallelization) 13:00 Lunch 14:00  - Overlapping Communication and Computation 14:20     Practical (taskloops)  15:00 Coffee Break 15:20  - MPI + OpenMP Conclusions 15:30  - MPI + Accelerators 15:45 Tools 16:00 Conclusions 16:15 Q&A 16:30 End https://events.prace-ri.eu/event/807/ 2019-01-28 08:30:00 UTC 2019-01-29 15:30:00 UTC [] [] [] workshops_and_courses [] []
  • ELIXIR Industry Advisory Committee meeting 2019

    28 - 29 January 2019

    United Kingdom

    ELIXIR Industry Advisory Committee meeting 2019 https://tess.elixir-europe.org/events/elixir-industry-advisory-committee-meeting-2019 The ELIXIR Industry Advisory Committee will hold their annual meeting in Hinxton, Cambridge on 29 January 2019. The key topics on the agenda are the review of the ELIXIR Industry Strategy, Metrics and Open Areas for Collaborations. A public summary report issued by the IAC following the meeting will be available after the meeting. 2019-01-28 19:00:00 UTC 2019-01-29 17:00:00 UTC Wellcome Genome Campus, United Kingdom Wellcome Genome Campus United Kingdom CB10 1SD [] [] [] meetings_and_conferences [] []
  • Programming Distributed Computing Platforms with COMPSs @ BSC

    29 - 30 January 2019

    Programming Distributed Computing Platforms with COMPSs @ BSC https://tess.elixir-europe.org/events/programming-distributed-computing-platforms-with-compss-bsc-690d7bfe-6074-40ae-a706-b4a06ca5dfa8 The registration to this course is now open. Please, bring your own laptop. All the PATC courses at BSC are free of charge. Course convener: Rosa Badia, Workflows and Distributed Computing Group Manager, Computer Sciences - Workflows and Distributed Computing Department Lecturers:  Rosa M Badia, Workflows and Distributed Computing Group Manager, Computer Sciences - Workflows and Distributed Computing Department, BSC Javier Conejero, Senior Researcher, Computer Sciences - Workflows and Distributed Computing Department, BSC Jorge Ejarque, Researcher, Computer Sciences - Workflows and Distributed Computing Department, BSC Daniele Lezzi, senior researcher, Computer Sciences - Workflows and Distributed Computing Department, BSC Objectives: The objective of this course is to give an overview of the COMPSs programming model, which is able to exploit the inherent concurrency of sequential applications and execute them in a transparent manner to the application developer in distributed computing platform. This is achieved by annotating part of the code as tasks, and building at execution a task-dependence graph based on the actual data used consumed/produced by the tasks. The COMPSs runtime is able to schedule the tasks in the computing nodes and take into account facts like data locality and the different nature of the computing nodes in case of heterogeneous platforms. Additionally, recently COMPSs has been enhanced with the possibility of coordinating Web Services as part of the applications. COMPSs supports Java, C/C++ and Python as programming languages. Learning Outcomes:  In the course, the COMPSs syntax, programming methodology and an overview of the runtime internals will be given. The attendees will get a first lesson about programming with COMPSs that will enable them to start programming with this framework. A hands-on with simple introductory exercises will be also performed. The students who finish this course will be able to develop simple COMPSs applications and to run them both in a local resource and in a distributed platform (initially in a private cloud) Level: for trainees with some theoretical and practical knowledge. INTERMEDIATE: for trainees with some theoretical and practical knowledge; those who finished the beginners course ADVANCED: for trainees able to work independently and requiring guidance for solving complex problems Prerequisites: Programming skills in Java and Python    Agenda:  Day 1 (January, 29) Session 1 / 9:30am – 1:00pm (1h lecture, 1:30h practical) 9: 30 am – 10:00 am Roundtable. Presentation and background of participants 10:00 am – 10:15 am Motivation and introduction to COMPSs 10:15 am – 11:00 am Programming mode: Python Syntax 11:00 am – 11:30 am Coffee Break 11:30 am – 13:00 pm Python Hands-on 13:00 pm – 14:30 pm Lunch Break   Session 2 / 2:30pm – 16:30pm (2h practical) 14:30 pm – 16:30 pm practical session on parallelizing with PyCOMPSs (bring your own code) 16:30pm - Adjourn     Day 2 (January, 30) Session 3 / 9:30am – 1:30pm (1:30h lecture, 2 h practical) 9:30 am – 10:00 am: Java Syntax 10:00 am – 11:00 pm Java Hands-on 11:00 am – 11:30 am Coffee Break 11:30 am – 12:00 pm COMPSs execution environment 12:00 pm – 12:30 pm Integration COMPSs+OmpSs 12:30 pm – 13:30 pm Cluster Hands-on (MareNostrum) 13.30 pm – 14.30 pm Lunch Break   Session 4 / 2:30pm – 16:30pm (2h practical) 14.30 pm – 16.00 pm practical session on parallelizing with COMPSs (bring your own code) 16:00 pm – 16:30 pm COMPSs Installation and Final Notes 16:30pm - Adjourn   END of COURSE     https://events.prace-ri.eu/event/760/ 2019-01-29 08:30:00 UTC 2019-01-30 15:30:00 UTC [] [] [] workshops_and_courses [] []
  • Ensembl Browser Workshop, DKFZ Heidelberg, 29 January 2019

    29 January 2019

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ Heidelberg, 29 January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-heidelberg-29-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-29 09:00:00 UTC 2019-01-29 17:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] []
  • Ensembl Browser workshop, University of Nottingham, 29th January 2019

    29 January 2019

    Nottingham, United Kingdom

    Elixir node event
    Ensembl Browser workshop, University of Nottingham, 29th January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-university-of-nottingham-29th-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-29 09:00:00 UTC 2019-01-29 17:00:00 UTC University of Nottingham, Nottingham, United Kingdom University of Nottingham Nottingham United Kingdom NG7 2RD [] Benjamin Moore [] [] [] [] []
  • Introduction to Metabolomics for the Microbiologist

    30 January - 1 February 2019

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist This three-day course will introduce the attendees in how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course will provide an overview of the metabolomics pipeline from experimental design to sample preparation and data acquisition to data analysis/interpretation. The course will be led by experts in the field of metabolomics and will include lectures, hands-on laboratory sessions in sample preparation and data acquisition and computer workshops focused on data processing and data analysis. 2019-01-30 09:00:00 UTC 2019-02-01 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Ensembl Browser Workshop, DKFZ Heidelberg, 30 January 2019

    30 January 2019

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ Heidelberg, 30 January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-heidelberg-30-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-30 09:00:00 UTC 2019-01-30 17:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] []
  • First Steps with UNIX in Life Sciences

    30 January 2019

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-101d134f-b515-4d0f-b840-49bdda0910a3 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2019-01-30 09:00:00 UTC 2019-01-30 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Data Manipulation and Visualisation in R

    30 January 2019

    Cambridge, United Kingdom

    Elixir node event
    Data Manipulation and Visualisation in R https://tess.elixir-europe.org/events/data-manipulation-and-visualisation-in-r-72066670-8f28-4c86-9bda-580d332b2dc5 This course introduces some relatively new additions to the R programming language: dplyr and ggplot2. In combination these R packages provide a powerful toolkit to make the process of manipulating and visualising data easy and intuitive. Materials for this course can be found [here](http://bioinformatics-core-shared-training.github.io/r-intermediate/). The training room is located on the first floor and there is currently no level access. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2823261&course-title=Data%20manipulation%20and%20visualisation).'' 2019-01-30 09:30:00 UTC 2019-01-30 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biology Bioinformatics University of Cambridge Bioinformatics Training [] Existing R users who are not familiar with dplyr and ggplot2Those with programming experience in other languages that want to know what R can offer themGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] []
  • Course single-cell transcriptomics and epigenomics 2019

    3 - 8 February 2019

    Roscoff, France

    Course single-cell transcriptomics and epigenomics 2019 https://tess.elixir-europe.org/events/course-single-cell-transcriptomics-and-epigenomics-2019 Duration The workshop will take place 3 - 8 February 2019 at Station Biologique de Roscoff, France Objectives This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce come with novel methodological challenges for the analysis. In this regard, specific bioinformatics and statistical methods have been developed in order to extract robust information. The workshop aims to provide such methods for engineers and researchers directly involved in functional genomics project making use of single-cell. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. Audience This course is directed towards engineers and researchers who regularly need to undertake single-cell data analysis as well as PhD Student and Post Doc in computational biology or bioinformatics that are interested in the development of methods and pipelines for highly dimensional single-cell data analysis. Working environment Unix command will be used for bioinformatic analysis, and R programming language for statistical analysis. Requirements Understanding of bioinformatics tools and pipelines for next generation sequencing data (RNA-seq or Hi-C or ATAC-seq bulk). Participants must have prior experience on NGS data analysis with R and basic Unix command line skills. Registration Deadline : 15th novembre 2018 (participants selection: end of November 2018). As the number of participants is limited (30 participants), the steering committee will retain candidates on the basis of the information inquired on the registration form. Frais d’inscription pour les personnels académiques Registration fees. A) Academy/University: 600€HT=720€TTC ; B) Private sector: 1.750€HT=2.100€TTC. The registration fee includes accommodation and meals. Scientific coordination:​ ​ Marc Deloger (Institut Curie, INSERM U900, Mines ParisTech), Marie-Agnès Dillies, C3BI (USR 3756 IP CNRS), Agnès Paquet, UCAGenomiX (IPMC CNRS), Antonio Rausell (Institut Imagine, INSERM UMR-1163), Nicolas Servant (Institut Curie, INSERM U900, Mines ParisTech), Morgane Thomas-Chollier, IBENS (CNRS UMR8197, ENS, INSERM U1024). Technical coordination :​ ​ Erwan Corre (ABIMS FR2424 CNRS-UPMC, Station Biologique de Roscoff) Administrative management​ :​ ​ C3BI (Institut Pasteur) 2019-02-03 09:00:00 UTC 2019-02-08 17:00:00 UTC Marc Deloger, Marie-Agnès Dillies, Agnès Paquet, Antonio Rausell, Nicolas Servant, Morgane Thomas-Chollier Station Biological De Roscoff, Place Georges Teissier, Roscoff, France Station Biological De Roscoff, Place Georges Teissier Roscoff Finistère France 29680 Epigenomics Transcriptomics [] inceptionifbfrance genomique [] 30 workshops_and_courses registration_of_interest []
  • Metabolomics Bioinformatics for Life Scientists

    4 - 8 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Metabolomics Bioinformatics for Life Scientists https://tess.elixir-europe.org/events/metabolomics-bioinformatics-for-life-scientists This course will provide an overview of key issues that effect metabolomics studies, handling datasets and procedures for the analysis of metabolomics data using bioinformatics tools. 2019-02-04 09:00:00 UTC 2019-02-08 16:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] [] [] []
  • Manual curation of Transposable element annotation

    4 - 6 February 2019

    Versailles, France

    Manual curation of Transposable element annotation https://tess.elixir-europe.org/events/manual-curation-of-transposable-element-annotation URGI organizes a BYOD-­style (Bring Your Own Data) training course on manual curation of transposable elements reference sequences obtained with REPET pipelines. For pre-registration, please fill the form before December 26, 2018, we will answer you before January 3rd, 2019: https://goo.gl/forms/ordIgogDuQffuQbZ2 Preliminary program Day 1: - Presentation of REPET outputs of TEdenovo and TEannot pipelines needed to curate the consensus library - Presentation of tools used to assist curation/validation of TE consensus - Presentation of use cases Day 2 and 3 -Practice on your data or a set of precomputed data Prerequesite You have already launched TEdenovo and TEannot pipelines using REPET version 2.5 The MySQL database is still alive OR You have already participated to a TE annotation training (@URGI or in the frame of an Elixir Genome assembly and annotation Course)In this case we’ll provide you a precomputed dataset for the training Fees : 150 € (Payment modalities will be sent once registration accepted) 2019-02-04 09:00:00 UTC 2019-02-06 17:00:00 UTC INRA, URGI platform INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10, Versailles, France INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10 Versailles France 78000 Bioinformatics Genomics INRA urgi-contact@inra.fr [] Bioinformatician, Bioanalysts 10 workshops_and_courses registration_of_interest Transposable elementsManual curationGenome sequence analysis
  • Traitement de données de séquences par Galaxy

    4 - 5 February 2019

    Traitement de données de séquences par Galaxy https://tess.elixir-europe.org/events/traitement-de-donnees-de-sequences-par-galaxy-365c9ca9-d10e-49e2-9c44-a4f427f58ed6 2019-02-04 09:00:00 UTC 2019-02-05 00:00:00 UTC [] Sandrine Lagarrigue [] [] [] [] []
  • Course: Introduction to Bioinformatics using NGS data

    4 - 9 February 2019

    Elixir node event
    Course: Introduction to Bioinformatics using NGS data https://tess.elixir-europe.org/events/course-introduction-to-bioinformatics-using-ngs-data https://www.scilifelab.se/events/introduction-to-bioinformatics-using-ngs-data-uppsala/ 2019-02-04 09:00:00 UTC 2019-02-09 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: single-cell RNA sequencing data analysis

    4 - 7 February 2019

    Elixir node event
    Course: single-cell RNA sequencing data analysis https://tess.elixir-europe.org/events/course-single-cell-rna-sequencing-data-analysis More information will follow 2019-02-04 09:00:00 UTC 2019-02-07 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Introduction to Bioinformatics using NGS data, Uppsala

    4 - 8 February 2019

    Elixir node event
    Introduction to Bioinformatics using NGS data, Uppsala https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-uppsala 2019-02-04 09:00:00 UTC 2019-02-08 00:00:00 UTC [] [] [] workshops_and_courses [] []
  • Big Data Analytics @ BSC

    5 - 8 February 2019

    Big Data Analytics @ BSC https://tess.elixir-europe.org/events/big-data-analytics-bsc-259ac7f9-7780-44d6-82f8-fdf33e6037d8 Registration is now open. Please, bring your own laptop. All the PATC courses at BSC are free of charge. Course Convener:  Maria-Ribera Sancho Objectives: The course brings together key information technologies used in manipulating, storing, and analysing data including: the basic tools for statistical analysis techniques for parallel processing tools for access to unstructured data storage solutions Learning outcomes: Students will be introduced to systems that can accept, store, and analyse large volumes of unstructured data. The learned skills can be used in data intensive application areas. Level: For trainees with some theoretical and practical knowledge AGENDA:  TBA       https://events.prace-ri.eu/event/761/ 2019-02-05 08:30:00 UTC 2019-02-08 15:30:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction to Metabolomics Analysis

    5 - 8 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Metabolomics Analysis https://tess.elixir-europe.org/events/introduction-to-metabolomics-analysis-9028d371-6ae8-4d8a-b878-7f03bc98132e This course will provide an introduction to metabolomics data analysis using publically available software and tools. 2019-02-05 09:00:00 UTC 2019-02-08 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] [] [] []
  • R-packaging

    5 February 2019

    Zürich, Switzerland

    Elixir node event
    R-packaging https://tess.elixir-europe.org/events/r-packaging-7d99e72f-ed13-45f7-807c-8903907185c0 Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usable packages in R. 2019-02-05 09:00:00 UTC 2019-02-05 00:00:00 UTC SIB, Zürich, Switzerland SIB Zürich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR Scientific Advisory Board meeting 2019

    6 - 7 February 2019

    United Kingdom

    ELIXIR Scientific Advisory Board meeting 2019 https://tess.elixir-europe.org/events/elixir-scientific-advisory-board-meeting-2019 The ELIXIR Scientific Advisory Board will hold their annual meeting 6-7 February 2019 in Hinxton, Cambridgeshire, UK. Details of agenda and registration will be made available to participants. Contacts For all logistical inquiries, please contact: Melissa Balzano (melissa.balzano@elixir-europe.org)  Tel: +44 (0)1223 494305 For all documentation inquiries, please contact: Joana Wingender (joana.wingender@elixir-europe.org)  Tel: +44 (0)1223 492670 2019-02-06 09:00:00 UTC 2019-02-07 17:00:00 UTC Wellcome Genome Campus, United Kingdom Wellcome Genome Campus United Kingdom [] [] [] meetings_and_conferences [] []
  • ELIXIR Scientific Advisory Board meeting

    6 - 7 February 2019

    United Kingdom

    ELIXIR Scientific Advisory Board meeting https://tess.elixir-europe.org/events/elixir-scientific-advisory-board-meeting-44220125-fdc3-4f32-8e27-53b0dea00d01 The ELIXIR Scientific Advisory Board will hold their annual meeting from 6-7 February 2019 in Hinxton, Cambridgeshire, UK. Details of agenda and registration have been made available to participants. 2019-02-06 09:00:00 UTC 2019-02-07 00:00:00 UTC Wellcome Genome Campus, United Kingdom Wellcome Genome Campus United Kingdom CB10 1SD [] [] [] meetings_and_conferences [] []
  • Workshop on Computational Biology at biology'19

    6 February 2019

    Zurich, Switzerland

    Elixir node event
    Workshop on Computational Biology at biology'19 https://tess.elixir-europe.org/events/workshop-on-computational-biology-at-biology-19 Overview SIB is co-organizing a workshop on computational biology on 6 Feb 2019 in Zurich, as a satellite event to Biology 2019, the annual Swiss conference on ecology, evolution, systematics and conservation. 2019-02-06 09:00:00 UTC 2019-02-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Data Management Plan @ MdlS/CINES

    6 - 8 February 2019

    Data Management Plan @ MdlS/CINES https://tess.elixir-europe.org/events/data-management-plan-mdls-cines Objective of the session: In the context of scientific research, Data Management Plans (DMP) are increasingly requested by project funders to describe the data lifecycle of projects from the craddle to the grave. The main difficulty is to fully understand what is exactly required to build such a document. The aim of this training is to assist researchers in putting together their own DMP, first by describing the important concepts to know before starting to draft one, then by having practical work sessions during which their own plan will be drafted with the support of experts. Day 1 : afternoon : presentation CINES, DMP + FAIR in theory, tools ; Day 2 : morning : Long term preservation (metadata, formats, principles),  DMP hands on ; afternoon : DMP hands on ; Day 3 : morning : EOSC-hub services, CINES visit. Prerequisites:  This training is intended for researchers who have a DMP to build as part of their research project. At the registration, participants will be asked to provide a simple description of the case for which they need to complete this document. Learning outcomes Trainers https://events.prace-ri.eu/event/813/ 2019-02-06 13:00:00 UTC 2019-02-08 16:00:00 UTC [] [] [] workshops_and_courses [] []
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