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198 events found
  • Open Targets Genetics at American University in Cairo

    18 June 2020

    United Kingdom

    Open Targets Genetics at American University in Cairo https://tess.elixir-europe.org/events/open-targets-genetics In this webinar, we introduce Open Targets Genetics, an easy-to-use and intuitive web interface to explore variant-gene-trait associations from UK Biobank and GWAS Catalog. 2020-06-18 09:00:00 UTC 2020-06-18 00:00:00 UTC Hinxton, United Kingdom Hinxton United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Introduction to Git & GitHub

    19 June 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-fb8f30cf-2699-400d-a699-5822a2d9f825 Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up & configurations Working locally: Create a repository, clone, edit, staging commits, commit & push Working with your history & logs Working in a project: Forking, branching & pull requests How to version control your code in Rstudio with GitHub 2020-06-19 09:00:00 UTC 2020-06-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • FEBS Advanced Courses

    21 - 26 June 2020

    Stockholm, Sweden

    FEBS Advanced Courses https://tess.elixir-europe.org/events/febs-advanced-courses 2020-06-21 09:00:00 UTC 2020-06-26 17:00:00 UTC Stockholm, Stockholm, Sweden Stockholm Stockholm Sweden [] [] [] [] [] Human Protein Atlas
  • Exploring the Human Proteome with Antibodies, Transcriptomics and Mass Spectrometry (CANCELLED)

    21 - 26 June 2020

    Elixir node event
    Exploring the Human Proteome with Antibodies, Transcriptomics and Mass Spectrometry (CANCELLED) https://tess.elixir-europe.org/events/exploring-the-human-proteome-with-antibodies-transcriptomics-and-mass-spectrometry 2020-06-21 09:00:00 UTC 2020-06-26 00:00:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction to R for Biologists (ONLINE LIVE TRAINING)

    22 - 23 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to R for Biologists (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-r-for-biologists-online-live-training-494464b5-8cde-48c4-b1b0-5b91df43e569 PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team will be teaching the course live online, with tutors to assist you with instant and personalised feedback and to help you to run/execute the scripts which we will be using during the course. We will be aiming to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. R is one of the leading programming languages in Data Science. It is widely used to perform statistics, machine learning, visualisations and data analyses. It is an open source programming language so all the software we will use in the course is free. This course is an introduction to R designed for participants with no programming experience. We will start from scratch by introducing how to start programming in R and progress our way and learn how to read and write to files, manipulate data and visualise it by creating different plots - all the fundamental tasks you need to get you started analysing your data. During the course we will be working with one of the most popular packages in R; tidyverse that will allow you to manipulate your data effectively and visualise it to a publication level standard. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3338957&course-title=Introduction%20to%20R%20for%20Biologists).'' 2020-06-22 08:30:00 UTC 2020-06-23 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Gentle hands-on introduction to Python programming

    22 - 26 June 2020

    Leuven, Belgium

    Elixir node event
    Gentle hands-on introduction to Python programming https://tess.elixir-europe.org/events/gentle-hands-on-introduction-to-python-programming-b4e7bd30-610a-4157-985f-850853a2c8cf Learning the basics of Python programming: different variables, reading files, writing files, conditional statements Being able to write a basic Python script from scratch 2020-06-22 09:00:00 UTC 2020-06-26 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • X-omics workshop: Linked data in practice: An RDF-based approach with SPARQLing-genomics

    22 June 2020

    Online, Online

    Elixir node event
    X-omics workshop: Linked data in practice: An RDF-based approach with SPARQLing-genomics https://tess.elixir-europe.org/events/x-omics-workshop-linked-data-in-practice-an-rdf-based-approach-with-sparqling-genomics The data pillar of X-omics will organize a first series of online workshops in June 2020. In the second workshop we look at an example of how to create and query linked data. Date/time: June 22, 2020. 12 PM –… The post X-omics workshop: Linked data in practice: An RDF-based approach with SPARQLing-genomics appeared first on Dutch Techcentre for Life Sciences. 2020-06-22 09:00:00 UTC 2020-06-22 00:00:00 UTC Online, Online, Online Online Online Online [] [] [] workshops_and_courses [] []
  • Introduction to statistics using R

    22 - 26 June 2020

    Introduction to statistics using R https://tess.elixir-europe.org/events/creating-scientific-figures For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2020-06-22 09:30:00 UTC 2020-06-26 13:00:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • BioExcel Summer School on Biomolecular Simulations 2020

    22 - 26 June 2020

    Elixir node event
    BioExcel Summer School on Biomolecular Simulations 2020 https://tess.elixir-europe.org/events/bioexcel-summer-school-on-biomolecular-simulations-2020 This course will provide participants who are using or planning to use biomolecular modeling and simulation in their everyday research with training in BioExcel flagship software 2020-06-22 12:00:00 UTC 2020-06-26 12:00:00 UTC [] Michelle Mendonca [] [] [] [] HDRUK
  • Machine Learning using Galaxy a webinar / workshop series

    22 - 26 June 2020

    Machine Learning using Galaxy a webinar / workshop series https://tess.elixir-europe.org/events/machine-learning-using-galaxy-a-webinar-workshop-series This workshop intends to facilitate the training and discourse amongst researchers interested in machine learning using Galaxy. It will be a one-week event, including webinar sessions in which we will introduce machine learning backgrounds and train researchers to use Galaxy for machine learning analysis. Every webinar session will be followed by a self-training day, in which experts will answer questions in a support channel and support on a peer-to-peer basis. 2020-06-22 15:00:00 UTC 2020-06-26 18:00:00 UTC online online [] [] [] [] [] machine learningGalaxy
  • Data Collection, Analysis and Interpretation for Genomic Medicine

    23 - 25 June 2020

    Copenhagen, Denmark

    Elixir node event
    Data Collection, Analysis and Interpretation for Genomic Medicine https://tess.elixir-europe.org/events/data-collection-analysis-and-interpretation-for-genomic-medicine This workshop will introduce cloud technologies for creating bioinformatics pipelines relevant to clinical decision making in genomic medicine. 2020-06-23 09:00:00 UTC 2020-06-25 13:00:00 UTC Mærsk Tower, University of Copenhagen, Copenhagen, Copenhagen, Denmark Mærsk Tower, University of Copenhagen, Copenhagen Copenhagen Denmark DK2200 [] Ajay Mishra [] [] [] [] HDRUK
  • Data Collection, Analysis and Interpretation for Genomic Medicine (Virtual)

    23 - 25 June 2020

    Copenhagen, Denmark

    Elixir node event
    Data Collection, Analysis and Interpretation for Genomic Medicine (Virtual) https://tess.elixir-europe.org/events/data-collection-analysis-and-interpretation-for-genomic-medicine-virtual The delivery of this course has changed from face-to-face to virtual. This workshop will introduce cloud technologies for creating bioinformatics pipelines relevant to clinical decision making in genomic medicine. 2020-06-23 09:00:00 UTC 2020-06-25 13:00:00 UTC Mærsk Tower, University of Copenhagen, Copenhagen, Copenhagen, Denmark Mærsk Tower, University of Copenhagen, Copenhagen Copenhagen Denmark DK2200 [] Ajay Mishra [] [] [] [] HDRUK
  • ELIXIR Bioinformatics Industry Forum: Large scale cloud computing in the life sciences

    23 June 2020

    ELIXIR Bioinformatics Industry Forum: Large scale cloud computing in the life sciences https://tess.elixir-europe.org/events/elixir-bioinformatics-industry-forum-large-scale-cloud-computing-in-the-life-sciences 2020-06-23 16:00:00 UTC 2020-06-23 16:00:00 UTC [] [] [] [] [] []
  • An Introduction to Machine Learning (ONLINE LIVE TRAINING)

    24 - 26 June 2020

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Machine Learning (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/an-introduction-to-machine-learning-18be52a3-28d7-4f66-a339-edd4cc7f6dcb Machine learning gives computers the ability to learn without being explicitly programmed. It encompasses a broad range of approaches to data analysis with applicability across the biological sciences. Lectures will introduce commonly used algorithms and provide insight into their theoretical underpinnings. In the practicals students will apply these algorithms to real biological data-sets using the R language and environment. Please be aware that the course syllabus is currently being updated following feedback from the last event; therefore the agenda below will be subjected to changes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3401732&course-title=An%20Introduction%20to%20Machine%20Learning).'' 2020-06-24 08:30:00 UTC 2020-06-26 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Machine learning Data mining Bioinformatics University of Cambridge Bioinformatics Training [] This is aimed at life scientists with little or no experience in machine learning and that are looking at implementing these approaches in their research.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • SAB Summer Teleconference 2020

    24 June 2020

    SAB Summer Teleconference 2020 https://tess.elixir-europe.org/events/sab-summer-teleconference-2020 The 2020 SAB Summer Teleconference will take place on Wednesday, 24 June 2020. This is an invitation only event. 2020-06-24 09:00:00 UTC 2020-06-24 00:00:00 UTC [] [] [] meetings_and_conferences [] []
  • First Steps with Perl in Life Sciences

    24 - 25 June 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Perl in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-perl More information soon 2020-06-24 09:00:00 UTC 2020-06-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Perl in Life Sciences (To be confirmed)

    24 - 25 June 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Perl in Life Sciences (To be confirmed) https://tess.elixir-europe.org/events/first-steps-with-perl-in-life-sciences SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-06-24 09:00:00 UTC 2020-06-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • X-omics workshop: Showcases of multi-omics data integration

    25 June 2020

    Online, Online

    Elixir node event
    X-omics workshop: Showcases of multi-omics data integration https://tess.elixir-europe.org/events/x-omics-workshop-showcases-of-multi-omics-data-integration The data pillar of X-omics will organize a first series of online workshops in June 2020. The third workshop will highlight showcases of multi-omics data integration. You will learn first-hand what challenges other researchers experienced and how they approached them.… The post X-omics workshop: Showcases of multi-omics data integration appeared first on Dutch Techcentre for Life Sciences. 2020-06-25 09:00:00 UTC 2020-06-25 00:00:00 UTC Online, Online, Online Online Online Online [] [] [] workshops_and_courses [] []
  • Deploying Web Services for COVID-19 Research in the de.NBI Cloud

    25 June 2020

    Deploying Web Services for COVID-19 Research in the de.NBI Cloud https://tess.elixir-europe.org/events/deploying-web-services-for-covid-19-research-in-the-de-nbi-cloud Educators: Martin Braun, Sven Twardziok (HiDiH) Date: 25.06.2020, 14:00 to 16:00 Location: Online lecture Contents/Learning goals: The de.NBI cloud provides priority access to their services for projects involved in COVID-19 research. With this, the de.NBI cloud supports hosting of COVID-19 related web services. Web services can improve collaboration of spatially distinct researchers; e.g. by providing a shared workspace for data analysis or as an application user interface to access data and tools. In our online lecture we will cover the whole process from applying a project in the de.NBI cloud to the deployment of a web service in the de.NBI cloud infrastructure. Thereby, we will focus on scalable deployment via docker swarm. As an example we will create and deploy a small R-Shiny application. The lecture is intended for scientists from undergraduate to postdoc level. It will be a general overview about the involved steps with examples and links to detailed information. Keywords: Docker, Traefik, R-Shiny, OpenStack, SSH 2020-06-25 14:00:00 UTC 2020-06-25 16:00:00 UTC de.NBI [] [] [] workshops_and_courses [] []
  • Enrichment Analysis - streamed

    26 June 2020

    Streamed from Lausanne, Switzerland

    Elixir node event
    Enrichment Analysis - streamed https://tess.elixir-europe.org/events/enrichment-analysis-streamed We are sorry but this course is oversubscribed, with a long waiting list. 2020-06-26 09:00:00 UTC 2020-06-26 00:00:00 UTC SIB, Streamed from Lausanne, Switzerland SIB Streamed from Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • [ONLINE] Node-Level Performance Engineering @ HLRS

    29 June - 1 July 2020

    [ONLINE] Node-Level Performance Engineering @ HLRS https://tess.elixir-europe.org/events/node-level-performance-engineering-hlrs-a71c9c00-22ea-4da8-b071-b7886cd7acc0 Overview This course teaches performance engineering approaches on the compute node level. "Performance engineering" as we define it is more than employing tools to identify hotspots and bottlenecks. It is about developing a thorough understanding of the interactions between software and hardware. This process must start at the core, socket, and node level, where the code gets executed that does the actual computational work. Once the architectural requirements of a code are understood and correlated with performance measurements, the potential benefit of optimizations can often be predicted. We introduce a "holistic" node-level performance engineering strategy, apply it to different algorithms from computational science, and also show how an awareness of the performance features of an application may lead to notable reductions in power consumption.This course provides scientific training in Computational Science, and in addition, the scientific exchange of the participants among themselves. For further information and registration please visit the HLRS course page. https://events.prace-ri.eu/event/1006/ 2020-06-29 06:45:00 UTC 2020-07-01 15:00:00 UTC [] [] [] workshops_and_courses [] []
  • An Introduction to MATLAB for biologists (ONLINE LIVE TRAINING)

    29 - 30 June 2020

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to MATLAB for biologists (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/an-introduction-to-matlab-for-biologists-56fe486a-5d6b-46d2-ab62-33a6bf501fb4 PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team be teaching the course live online, with tutors available to help you work through the course material on a personal copy of the course environment. We will be aiming to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. This course aims to give you an introduction to the basics of Matlab. During the two day course we will use a practical based approach to give you the confidence to start using Matlab in your own work. In particular we will show you how to write your own scripts and functions and how to use pre-written functions. We will also explore the many ways in which help is available to Matlab users. In addition we will cover basic computer programming in Matlab to enable you to write more efficient scripts. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3398010&course-title=An%20Introduction%20to%20MATLAB).'' 2020-06-29 08:30:00 UTC 2020-06-30 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Cancer Genomics

    29 June - 3 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-2787b481-b1cb-4721-971a-d68ec96d1cba This course will focus on the analysis of data from genomic studies of Cancer. Lectures will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the lecturers and teaching assistants. 2020-06-29 09:00:00 UTC 2020-07-03 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Cancer genomics (Cancelled)

    29 June - 3 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Cancer genomics (Cancelled) https://tess.elixir-europe.org/events/cancer-genomics-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-06-29 09:00:00 UTC 2020-07-03 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Data Carpentry - RMIT Melbourne

    29 - 30 June 2020

    Australia

    Data Carpentry - RMIT Melbourne https://tess.elixir-europe.org/events/data-carpentry-rmit-melbourne Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-06-29 09:00:00 UTC 2020-06-30 00:00:00 UTC RMIT Melbourne, Australia RMIT Melbourne Australia RMIT University [] [] workshops_and_courses [] []
  • Variant Effect Prediction

    30 June - 3 July 2020

    Breda, Breda

    Elixir node event
    Variant Effect Prediction https://tess.elixir-europe.org/events/variant-effect-prediction-22d1c5c8-5e1d-4352-b08d-896a2c2aeae7 This course is organised in collaboration with Dr. J.T. den Dunnen, Human Genetics & Clinical Genetics, LUMC, Leiden Aim of the course: DNA sequencing, incl. NGS, is a standard technology used in most modern laboratories. When the focus is on… The post Variant Effect Prediction appeared first on Dutch Techcentre for Life Sciences. 2020-06-30 09:00:00 UTC 2020-07-03 00:00:00 UTC Breda, Breda, Breda Breda Breda Breda [] [] [] workshops_and_courses [] []
  • X-omics workshop: Pitch your own multi-omics project

    30 June 2020

    Online, Online

    Elixir node event
    X-omics workshop: Pitch your own multi-omics project https://tess.elixir-europe.org/events/x-omics-workshop-pitch-your-own-multi-omics-project The data pillar of X-omics will organize a first series of online workshops in June 2020. In the final workshop, we invite you to pitch your own multi-omics project and discuss it with other researchers and experts from the field.… The post X-omics workshop: Pitch your own multi-omics project appeared first on Dutch Techcentre for Life Sciences. 2020-06-30 09:00:00 UTC 2020-06-30 00:00:00 UTC Online, Online, Online Online Online Online [] [] [] workshops_and_courses [] []
  • Data Carpentry - ONLINE

    1 - 2 July 2020

    United Kingdom

    Data Carpentry - ONLINE https://tess.elixir-europe.org/events/data-carpentry-online-ae351ba4-b6b9-4cc7-a4c7-7e3deb9c1875 Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-07-01 09:00:00 UTC 2020-07-02 00:00:00 UTC ONLINE, United Kingdom ONLINE United Kingdom University of Edinburgh [] [] workshops_and_courses [] []
  • WEBINAR: Comparison of long read methods for sequencing and assembly of a plant genome

    2 July 2020

    WEBINAR: Comparison of long read methods for sequencing and assembly of a plant genome https://tess.elixir-europe.org/events/webinar-comparison-of-long-read-methods-for-sequencing-and-assembly-of-a-plant-genome 2020-07-02 12:00:00 UTC 2020-07-02 13:00:00 UTC Australian BioCommons Bioinformatics Australian Biocommons [] [] [] [] bioinformatics
  • RNA-seq Analysis for Beginners

    3 July 2020

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-13c9f173-2fdd-4ea6-9005-58aa798bf289 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2020-07-03 08:30:00 UTC 2020-07-03 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

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