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289 events found
  • Bioweek: Single cell RNA-seq data analysis using Chipster

    14 - 15 March 2019

    Elixir node event
    Bioweek: Single cell RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/bioweek-single-cell-rna-seq-data-analysis-using-chipster-ac65eb29-66e9-4d0f-b0ba-2b52dbdd795a This introductory course covers single cell RNA-seq data analysis methods, tools and file formats. The free and user-friendly Chipster software is used in the exercises, and the course is thus suitable for everybody. 2019-03-14 09:00:00 UTC 2019-03-15 16:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Ensembl Browser Workshop, Instituto de Pesquisa Pelé Pequeno Príncipe, 14th March 2019

    14 March 2019

    Curitiba, Brazil

    Elixir node event
    Ensembl Browser Workshop, Instituto de Pesquisa Pelé Pequeno Príncipe, 14th March 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-instituto-de-pesquisa-pele-pequeno-principe-14th-march-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-03-14 09:00:00 UTC 2019-03-14 09:00:00 UTC Bristol Brasil 500 Hotel, Curitiba, Brazil Bristol Brasil 500 Hotel Curitiba Brazil 80420-164 [] Carolina Prando [] [] [] [] []
  • Deep learning for digital pathology image analysis (lectures only)

    14 March 2019

    Basel, Switzerland

    Elixir node event
    Deep learning for digital pathology image analysis (lectures only) https://tess.elixir-europe.org/events/deep-learning-for-digital-pathology-image-analysis-lectures-only This course is now over-subscribed with a waiting list. 2019-03-14 09:00:00 UTC 2019-03-14 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Deep learning for digital pathology image analysis (practicals and lectures)

    14 March 2019

    Basel, Switzerland

    Elixir node event
    Deep learning for digital pathology image analysis (practicals and lectures) https://tess.elixir-europe.org/events/deep-learning-for-digital-pathology-image-analysis-practicals-and-lectures This course is now over-subscribed with a waiting list. 2019-03-14 09:00:00 UTC 2019-03-14 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Software Carpentry - Vanderbilt University

    15 March - 19 April 2019

    Software Carpentry - Vanderbilt University https://tess.elixir-europe.org/events/software-carpentry-vanderbilt-university-edf7b74c-2dff-45cd-819f-4bb0d4e84388 Find out more at https://broadwym.github.io/2019-03-15-vanderbilt/ 2019-03-15 09:00:00 UTC 2019-04-19 00:00:00 UTC Software Carpentry Vanderbilt University Vanderbilt University [] [] [] workshops_and_courses [] []
  • Ensembl Train the Trainer Workshop, Instituto de Pesquisa Pelé Pequeno Príncipe, 15th March 2019

    15 March 2019

    Curitiba, Brazil

    Elixir node event
    Ensembl Train the Trainer Workshop, Instituto de Pesquisa Pelé Pequeno Príncipe, 15th March 2019 https://tess.elixir-europe.org/events/ensembl-train-the-trainer-workshop-instituto-de-pesquisa-pele-pequeno-principe-15th-march-2019 Work with the Ensembl outreach team to develop teaching skills and practice delivering Ensembl Browser workshops. 2019-03-15 14:15:00 UTC 2019-03-15 14:15:00 UTC Instituto de Pesquisa Pelé Pequeno Príncipe, Curitiba, Brazil Instituto de Pesquisa Pelé Pequeno Príncipe Curitiba Brazil 80.250-060 [] Carolina Prando [] [] [] [] []
  • Advanced Topics in High Performance Computing @ LRZ

    18 - 21 March 2019

    Advanced Topics in High Performance Computing @ LRZ https://tess.elixir-europe.org/events/advanced-topics-in-high-performance-computing-lrz-cfe82cd6-32b5-4187-b72a-b90b2c55c36d In this add-on course to the parallel programming course special topics are treated in more depth, in particular performance analysis, advanced OpenMP programming, I/O and PGAS concepts. It is provided in collaboration of Erlangen Regional Computing Centre (RRZE) and LRZ within KONWIHR. The course is a PRACE Training event. Each day is comprised of approximately 5 hours of lectures and 2 hours of hands-on sessions. Tentative schedule: Day 1 (09:00-17:00) Processor-Specific Optimization Day 2 (09:00-17:00) 09:00-12:30 Parallel I/O with MPI IO 13:30-17:00 Tuning I/O on LRZ's HPC systems / I/O Profiling: Darshan tool Day 3 (09:00-17:00) 09:00-12:30 Scientific Data Libraries: HDF5 / Scalable I/O library: SIONlib 13:30-15:00 SuperMUC Tour 15:00 - 17:00 Advanced Parallel Programming (tbc.) Day 4 (09:00-17:00) PGAS programming with coarray Fortran and Unified Parallel C https://events.prace-ri.eu/event/822/ 2019-03-18 08:00:00 UTC 2019-03-21 16:00:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction to Next-generation Sequencing

    18 - 20 March 2019

    Irapuato, Mexico

    Elixir node event
    Introduction to Next-generation Sequencing https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-fefd0a92-9254-4c73-b6d9-c4dac54afba0 This course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data. 2019-03-18 09:00:00 UTC 2019-03-20 17:30:00 UTC LANGEBIO, Cinvestav, Irapuato, Mexico LANGEBIO, Cinvestav Irapuato Mexico 36821 [] Marina Pujol [] [] [] [] []
  • Software Carpentry - University of North Texas

    18 - 19 March 2019

    Software Carpentry - University of North Texas https://tess.elixir-europe.org/events/software-carpentry-university-of-north-texas-a113feb1-928d-436f-b756-bce5f632c64c Find out more at https://unt-carpentries.github.io/2019-03-18-unt-swc/ 2019-03-18 09:00:00 UTC 2019-03-19 00:00:00 UTC Software Carpentry University of North Texas University of North Texas [] [] [] workshops_and_courses [] []
  • Metabolomics Data Processing and Data Analysis

    18 March - 12 April 2019

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis This online course will explore the tools and approaches that are used to process and analyse metabolomics data, we will investigate the challenges that are typically encountered in the analysis of metabolomics data and provide solutions to overcome these problems. The course will be delivered using a combination of short videos, articles, discussions, and online workshops with step-by-step instructions and test data sets. 2019-03-18 09:00:00 UTC 2019-04-12 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Ensembl Browser Workshop, UNICAMP Universidade Estadual de Campinas, 18th March 2019

    18 March 2019

    Campinas, Brazil

    Elixir node event
    Ensembl Browser Workshop, UNICAMP Universidade Estadual de Campinas, 18th March 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-unicamp-universidade-estadual-de-campinas-18th-march-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-03-18 09:00:00 UTC 2019-03-18 09:00:00 UTC UNICAMP Universidade Estadual de Campinas, Campinas, Brazil UNICAMP Universidade Estadual de Campinas Campinas Brazil 13083-970 [] Marcelo Brandão [] [] [] [] []
  • CABANA Workshop: Introduction to Next-generation Sequencing

    18 - 20 March 2019

    Irapuato, Mexico

    Elixir node event
    CABANA Workshop: Introduction to Next-generation Sequencing https://tess.elixir-europe.org/events/cabana-workshop-introduction-to-next-generation-sequencing This course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data. 2019-03-18 09:00:00 UTC 2019-03-20 17:30:00 UTC LANGEBIO, Cinvestav, Irapuato, Mexico LANGEBIO, Cinvestav Irapuato Mexico 36821 [] Marina Pujol [] [] [] [] []
  • Gatersleben Research Conference: Applied Bioinformatics for Crops

    18 - 21 March 2019

    Gatersleben Research Conference: Applied Bioinformatics for Crops https://tess.elixir-europe.org/events/gatersleben-research-conference-applied-bioinformatics-for-crops 2019-03-18 09:00:00 UTC 2019-03-21 00:00:00 UTC [] Björn Grüning [] [] [] [] []
  • Spring School in Computational Chemistry 2019 @ CSC

    19 - 22 March 2019

    Spring School in Computational Chemistry 2019 @ CSC https://tess.elixir-europe.org/events/spring-school-in-computational-chemistry-2019-csc Description The Spring School provides a comprehensive, tutorial-style, hands-on, introductory and intermediate-level treatment to the essential ingredients for molecular modeling and computational chemistry using modern supercomputers. The School program is being prepared, but the main content will be similar to last years and consists of: Classical molecular dynamics, intro + hands on (1 day) Electronic structure theory, intro  + hands on (1 day) Machine learning in chemistry, intro + hands on Special topics: e.g. on Visualization, Enchanced Sampling Techniques, etc. The school is a must for graduate students in the field, providing an overview on "what can be calculated and how should it be done", without forgetting the important aspect of network building. Note: the School has been overbooked in one week after registration was opened. We are investigating the possibility to accommodate more participants, but it is likely that new registrations will go to waiting list. Learning outcome The learning outcome is to gain an overview of the two main methods in computational chemistry — molecular dynamics and electronic structure calculations — in connection with related HPC software packages and other useful skills in the trade. The workshop is also suited for an intensive crash course (the first two days) in computational modelling and is expected to be useful for students and researchers also in physics, materials sciences and biosciences. The following "Special topics" then build on this foundation. Prerequisites Working knowledge and some work experience from some branch of computational chemistry will be useful. Basic linux skills for hands-on exercises and elementary Python for Machine Learning hands-on. More detailed description of pre-requisites and links for self study. Programme See tentative timetable on the left menu, browse 2018 materials or comments from participants in 2018. Lecturers:  Dr. Filippo Federici Canova, Aalto University, Finland Dr. Mikael Johansson, University of Helsinki, Finland Marc Jäger, Aalto University, Finland Dr. Luca Monticelli, IBCP (CNRS), Lyon, France Dr. Michael Patzschke, Helmholtz-Zentrum Dresden-Rossendorf, Germany Prof. Patrick Rinke, Aalto University, Finland to be continued Dr. Martti Louhivuori, CSC - IT Center for Science, Finland Dr. Atte Sillanpää, CSC - IT Center for Science, Finland Dr. Nino Runeberg, CSC- IT Center for Science, Finland Language:  English Price:         Free of charge https://events.prace-ri.eu/event/786/ 2019-03-19 07:00:00 UTC 2019-03-22 13:00:00 UTC [] [] [] workshops_and_courses [] []
  • Exploring Human Genetic Variation

    19 - 20 March 2019

    Cambridge, United Kingdom

    Elixir node event
    Exploring Human Genetic Variation https://tess.elixir-europe.org/events/exploring-human-genetic-variation-e6a33d21-d6e3-4586-85e5-9b2be06f1752 This two-day workshop will data resources and bioinformatics tools available at EMBL-EBI and the Sanger Institute that will aid understanding of human genetic variation. 2019-03-19 09:00:00 UTC 2019-03-20 17:15:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 2 Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] [] [] [] []
  • Ensembl Train the Trainer Workshop, UNICAMP Universidade Estadual de Campinas, 19th March 2019

    19 March 2019

    Campinas, Brazil

    Elixir node event
    Ensembl Train the Trainer Workshop, UNICAMP Universidade Estadual de Campinas, 19th March 2019 https://tess.elixir-europe.org/events/ensembl-train-the-trainer-workshop-unicamp-universidade-estadual-de-campinas-19th-march-2019 Work with the Ensembl outreach team to develop teaching skills and practice delivering Ensembl Browser workshops. 2019-03-19 09:30:00 UTC 2019-03-19 09:30:00 UTC UNICAMP Universidade Estadual de Campinas, Campinas, Brazil UNICAMP Universidade Estadual de Campinas Campinas Brazil 13083-970 [] Marcelo Brandão [] [] [] [] []
  • Petaflop System Administration; Marenostrum 4 @ BSC

    20 - 21 March 2019

    Petaflop System Administration; Marenostrum 4 @ BSC https://tess.elixir-europe.org/events/petaflop-system-administration-marenostrum-4-bsc-6ce6f94e-a95e-432c-9e44-f7ceec5653c8 The registration to this course is now open. Please, bring your own laptop. All the PATC courses at BSC are free of charge. Course Convener: Javier Bartolome, Systems Group Manager, Operations - System Administration, BSC Objectives: Explain the different components that MareNostrum 4 is composed, which were the design decisions taken and why. Explain how the system administration is taken in this Petaflop system. Learning Outcomes: The students will learn how MareNostrum 4 is organized and how it works. This can have some insights and ideas about how to manage clusters of thousands of nodes in a HPC or no-HPC environment. Level: INTERMEDIATE, for trainees with some theoretical and practical knowledge; those who finished the beginners course. Prerequisites: Experience on Linux system administration is required. Lecturer: Javier Bartolome, Systems Group Manager, Operations - System Administration, BSC Agenda: Day 1 (March, 20) Session 1 / 9:00am – 1:00 pm  (3:30 h lectures) 9h-9:20h Introduction & outline of the course 9:20h-9:40h MareNostrum4 Overview 9:40h-10:40h Storage in MareNostrum4 10:40h-11h COFFE BREAK 11h-11:30h Networks on MareNostrum4 11:30h -13h Clustering Software 13h-14h LUNCH BREAK   Session 2 / 2:00pm – 6:00 pm (3:30 h practical) 14h-15:30h Practice on clustering software 15:30h-15:45h COFFE BREAK 15:45-16:30h Monitoring MareNostrum4 16:30h-17h MareNostrum4 Facility 17h-18h Visit to MareNostrum4 18h Adjourn   Day 2 (March, 21) 9am – 12:30pm Session 3 / 9:00am – 12:30 pm  (3 h lectures) 9h-10h MareNostrum4 Schedule system 10h-11h PRACE Project and Services 11h-11:15h COFFEE BREAK 11:15h-12h MareNostrum4 software stack 12h-12:30h Questions/Wrap-up   End Of Course https://events.prace-ri.eu/event/765/ 2019-03-20 08:00:00 UTC 2019-03-21 12:00:00 UTC [] [] [] workshops_and_courses [] []
  • PRACE Deep Learning Workshop @ KTH/PDC

    20 - 21 March 2019

    PRACE Deep Learning Workshop @ KTH/PDC https://tess.elixir-europe.org/events/industrial-workshop-on-comsol-and-openfoam-kth This workshop gives a practical introduction to deep learning, convolutional and recurrent neural networks, GPU computing, and tools to train and apply deep neural networks for natural language processing, images, and other applications. It consists of lectures and hands-on exercises. Keras (https://keras.io/) and PyTorch (https://pytorch.org/) will be used in the exercise sessions.  After the workshop the participants should have the skills and knowledge needed to begin applying deep learning for different tasks and utilizing the GPU resources available at PDC for training and deploying their own neural networks. The participants are assumed to have working knowledge of Python and suitable background in data analysis, machine learning, or a related field. Previous experience in deep learning is not required, but the fundamentals of machine learning are not covered on this course. Agenda     Time Day 1 / March 20, 2019    09:00-10:30 Lecture: Introduction to deep learning 10:30-11:00 Exercises: Introduction to Notebooks, Keras fundamentals 11:00-12:00 Lecture: Image data, multi-layer percepton networks, convolutional neural networks 12:00-13:00 Lunch 13:00-14:00 Exercises: Image classification with MLPs, CNNs 14:00-15:00 Lecture: Text data, embeddings, neural NLP, recurrent neural network 15:00 - 16:00 Exercises: Text sentiment classification with CNNs, RNNs       Time Day 2 / March 21, 2019    09:00-10:00 Lecture: GPUs, batch jobs, using PDC-GPU 10:00-12:00 Exercises: Image classification 12:00-13:00 Lunch 13:00-14:00 Exercises: Text categorization and labelling 14:00-15:00 Lecture: Cloud, GPU utilization, multiple GPUs 15:00-16:00 Exercises: Using multiple GPUs   Pre-requisites: 1. Own laptop; 2. Valid account at PDC, KTH. After getting an acceptance confirmation you have to apply for a PDC account on Beskow supercomputer. The instructions how to apply for the account will be sent by the confirmation e-mail. Lecturers: Markus Koskela & Mats Sjöberg (CSC-Finland) Language: English Price:          Free of charge   https://events.prace-ri.eu/event/412/ 2019-03-20 08:00:00 UTC 2019-03-21 16:00:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction into Galaxy and how to design your own analysis workflow

    20 - 23 March 2019

    Introduction into Galaxy and how to design your own analysis workflow https://tess.elixir-europe.org/events/introduction-into-galaxy-and-how-to-design-your-own-analysis-workflow 2019-03-20 09:00:00 UTC 2019-03-23 00:00:00 UTC [] Anne Fiebig [] [] [] [] []
  • Webinar: Metadata in Science

    20 March 2019

    Elixir node event
    Webinar: Metadata in Science https://tess.elixir-europe.org/events/webinar-metadata-in-science This webinar gives you a quick introductions on metadata usage in research data. Metadata needs to be standardized in order to be able to compare data to other data. Metadata schemes are the overall structure for the metadata. 2019-03-20 14:00:00 UTC 2019-03-20 15:00:00 UTC Join the webinar at Zoom! Link to the room: https://cscfi.zoom.us/j/289605529 Join the webinar at Zoom! Link to the room: https://cscfi.zoom.us/j/289605529 [] [] [] [] [] []
  • Wormbase

    20 March 2019

    Elixir node event
    Wormbase https://tess.elixir-europe.org/events/wormbase This webinar is currently under development. Full details about the webinar and information on how to register will be posted here once they have been confirmed. 2019-03-20 15:30:00 UTC 2019-03-20 16:30:00 UTC [] [] [] [] [] []
  • RNAseq analysis with Galaxy

    21 - 22 March 2019

    RNAseq analysis with Galaxy https://tess.elixir-europe.org/events/rnaseq-analysis-with-galaxy 2019-03-21 09:00:00 UTC 2019-03-22 00:00:00 UTC [] https://gitter.im/ARTbio/Hotline [] [] [] [] []
  • Revolutionizing Next-Generation Sequencing (3rd edition)

    25 - 26 March 2019

    Antwerpen, Belgium

    Revolutionizing Next-Generation Sequencing (3rd edition) https://tess.elixir-europe.org/events/revolutionizing-next-generation-sequencing-3rd-edition After two successful editions (Jan 2015, Leuven and March 2017, Antwerp), VIB is proud to present the third edition of this Tools & Technologies conference. VIB believes that the revolutionary discoveries enabled by NGS are not yet at its zenith and that the technology can go much further. During this 3rd edition VIB will bring together over 30 top scientists and technology developers form both industry and academia. They will discuss emerging tools and approaches in several sessions such as: • Long reads, Genome Structure and Mapping • Epigenomics • Metagenomics • Spatial transcriptomics • Population Scale and Clinical Sequencing • Single Cell Sequencing • Emerging technologies In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions and the conference dinner. Also young scientists are encouraged to showcase their own work to the international research community by oral or poster presentation! Information for poster submissions: The format for your poster should be: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 11/02/2019 • Late Registration: 11/03/2019 • Abstract deadline: 21/01/2019 2019-03-25 08:00:00 UTC 2019-03-26 18:00:00 UTC VIB Conferences BluePoint Antwerpen, 9, Filip Williotstraat, Antwerpen, Belgium BluePoint Antwerpen, 9, Filip Williotstraat Antwerpen Antwerpen Belgium 2600 Mapping Population genomics Population genetics Sequencing Transcriptomics Metagenomic sequencing Metagenomics Epigenetics Epigenomics Genotyping experiment Genotype and phenotype Genomics [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be BioradBiokeLexogenAnalisBio-techneBGI [] 350 meetings_and_conferences [] Genome Structure Genome MappingEpigenomicsMetagenomicsSpatial transcriptomicsPopulation Scale clinical sequencingSequencingSingle Cell Sequencing
  • Software Carpentry - Bigelow Laboratory for Ocean Sciences

    25 - 26 March 2019

    Software Carpentry - Bigelow Laboratory for Ocean Sciences https://tess.elixir-europe.org/events/software-carpentry-bigelow-laboratory-for-ocean-sciences Find out more at https://bigelowlab.github.io/2019-03-25-Bigelow-DataCarpentry/ 2019-03-25 09:00:00 UTC 2019-03-26 00:00:00 UTC Software Carpentry Bigelow Laboratory for Ocean Sciences Bigelow Laboratory for Ocean Sciences [] [] [] workshops_and_courses [] []
  • Introduction to Proteomics

    25 March 2019

    Elixir node event
    Introduction to Proteomics https://tess.elixir-europe.org/events/introduction-to-proteomics Proteomics is a systems biology approach to study the entire protein complement of a cell, tissue, or organism. This large-scale study of proteins is increasingly popular in post genomics era and has found its widespread applications in fields including drug discovery, cardiovascular research, and nutrition research, just to name a few. This course will provide both theoretical and practical training at the introductory level. Participants will learn the principles of current methodologies and apply bioinformatics tools for data analysis. 2019-03-25 09:00:00 UTC 2019-03-25 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Antibody based technologies

    25 March 2019

    Elixir node event
    Antibody based technologies https://tess.elixir-europe.org/events/antibody-based-technologies 2019-03-25 09:00:00 UTC 2019-03-25 17:00:00 UTC [] [] [] workshops_and_courses [] []
  • An Introduction to Solving Biological Problems with R

    25 - 26 March 2019

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-870b40ac-8d7c-4931-8051-302644c93d9f [R](https://www.r-project.org/) is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. The course website providing links to the course materials is [here](http://cambiotraining.github.io/r-intro/). Please note that although we will demonstrate how to perform statistical analysis in R, we will not cover the theory of statistical analysis in this course. Those seeking an in-depth explanation of how to perform and interpret statistical tests are advised to see the list of Related courses. Moreover, those with some programming experience in other languages (e.g. Python, Perl) might wish to attend the follow-on [Data Analysis and Visualisation in R](http://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intR) course. This event is supported by the BBSRC Strategic Training Awards for Research Skills (STARS) grant (BB/P022766/1). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2673375&course-title=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R).'' 2019-03-25 09:30:00 UTC 2019-03-26 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] []
  • Advanced Fortran Programming @ CSC

    26 - 28 March 2019

    Advanced Fortran Programming @ CSC https://tess.elixir-europe.org/events/advanced-fortran-programming-csc-6da7e8e1-98f1-4b80-ba96-23f3f01c8238 Description This course covers the modern features of the Fortran programming language. Topics include object-oriented features, language interoperability and several other enhancements included in Fortran 2008 standard. In addition, a way to express distributed memory parallelism via Fortran coarrays will be discussed in detail. The course provides an overview on all relevant features of Fortran beyond the 95 standard. You will also be able to write parallel programs using the Fortran coarrays concept. Learning outcome The course provides an overview on all the relevant features of Fortran beyond the 95 standard. You also will be able to write parallel programs using the Fortran coarrays concept. Prerequisites Solid knowledge of Fortran 95/2003. The concepts discussed in the PATC introduction course Fortran Programming for Scientific Computing is the minimum. Knowledge on C will also be needed for understanding the topics on the language interoperability. Familiarity with parallel programming with message-passing interface (MPI) standard will be assumed when discussing the Fortran coarrays. In addition, some familiarity with object-oriented programming concepts will be assumed. Agenda Day 1: Tuesday, March 26 09.00-09.15  Course introduction 09.15-10.00  Useful new features beyond F95 10.00-10.15  Coffee break 10.15-11.00  Advanced topics in Fortran I/O 11.00-11.45  Exercises 11.45-12:00  Working with Fortran compilers 12.00-13.00  Lunch break 13.00-14.00  Interoperability with C 14.00-14.45  Exercises 14.45-15.00  Coffee break 15.00-16.00  Exercises Day 2: Wednesday, March 27 09.00-09.45  Introduction to Fortran coarrays 09.45-10.00  Coffee break 10.00-11.15  Exercises 11.15-12.00  More coarray features 12.00-13.00  Lunch break 13.00-14.00  Exercises 14.00-14.45  Advanced topics in coarrays 14.45-15.00  Coffee break 15.00-16.00  Exercises Day 3: Thursday, March 28 09.00-10.00  Additional capabilities of Fortran types, procedure pointers 10.00-10.15  Coffee break 10.15-11.00  Exercises 11.00-12.00  Type extensions, type-bound procedures 12.00-13.00  Lunch break 13.00-14.00  Exercises 14.00-14.45  More complex data structures with Fortran 14.45-15.00  Coffee break 15.00-16.00  Exercises Lecturers:  Sami Ilvonen (CSC), Peter Råback (CSC) Language:   English Price:          Free of charge https://events.prace-ri.eu/event/852/ 2019-03-26 07:00:00 UTC 2019-03-28 14:00:00 UTC [] [] [] workshops_and_courses [] []
  • Parallel visualization of scientific data using Blender @ IT4Innovations

    26 March 2019

    Parallel visualization of scientific data using Blender @ IT4Innovations https://tess.elixir-europe.org/events/parallel-visualization-of-scientific-data-using-blender-it4innovations Annotation The course will focus on visualization of large datasets that can come from simulations of different physical phenomena (e.g. fluid dynamics, structural analysis, etc.). To create visually pleasing outputs of such data a path tracing rendering method will be used. Most of the course aspects will be covered within the popular 3D creation suite Blender. We will work with the brand new version 2.8 and introduce our developed plug-in called Covise Nodes to work with the scientific data inside Blender. Within the course we will demonstrate some of the basics of Blender, followed by a data visualization example using the plug-in, and we will finish the course with rendering of the final scene on the Salomon cluster. The course will be mainly hands-on. Purpose of the course (benefits for the attendees) Attendees will learn how to visualize different simulation data in Blender and how to provide visually pleasing outputs. About the tutor(s) Petr Strakoš obtained his Ph.D. from CTU (the Czech Technical University in Prague) in Mechanical Engineering. Now he is a member of the Infrastructure Research Lab and the VaVR (Visualization and Virtual Reality) group, where he focuses on research in the area of visualization, image processing, and efficient utilization of these topics on a cluster. He also cooperates with partners from industry and other institutions in applied research. Milan Jaroš is a researcher in the Infrastructure Research Lab at IT4Innovations. He has nine years of experience in professional programming (C++, C#, Java, etc.). He has developed several pieces of commercial software (including mobile applications). In recent years he has been focusing on research in the area of HPC computing (including support of GPU and Intel Xeon Phi coprocessor), processing of medical images, and visualizations of engineering data (virtual reality, rendering, post-processing of CFD calculation, etc.). He is a co-developer of plugins for multiple pieces of software (Blender, COVISE/OpenCOVER, Unity, etc.). Alena Ješko is a researcher in the Infrastructure Research Lab at IT4Innovations. She has worked on mesh transformation topics for cranial orthosis design and photogrammetry for treating orbital fractures. She has recently started to work on AI and Machine Learning in Image Processing. https://events.prace-ri.eu/event/851/ 2019-03-26 08:30:00 UTC 2019-03-26 15:30:00 UTC [] [] [] workshops_and_courses [] []
  • Software Carpentry - UC Irvine Libraries

    26 - 27 March 2019

    Software Carpentry - UC Irvine Libraries https://tess.elixir-europe.org/events/software-carpentry-uc-irvine-libraries-d2a350f7-c79e-4804-b116-a4c1d368244f Find out more at https://uci-libraries.github.io/2019-03-26-UCI/ 2019-03-26 09:00:00 UTC 2019-03-27 00:00:00 UTC Software Carpentry UC Irvine Libraries UC Irvine Libraries [] [] [] workshops_and_courses [] []
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