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GTN Smörgåsbord 3: OneHealth - Building a pathogen surveillance system with Galaxy - An automated SARS-CoV-2 genome surveillance system built around Galaxy
Galaxy, Build, pathogen surveillance system, automated, automation, SARS-CoV-2, genome surveillance, system Galaxy, Building, pathogen surveillance system, Automating, automation, workflows, command line Galaxy, Building, pathogen surveillance system, Removal,human reads, SARS-CoV-2, sequencing data Galaxy, Building, pathogen surveillance system, Upload data, ENA Galaxy, Building, pathogen surveillance system, usegalaxy, SARS-CoV-2, Bot Galaxy, Sequencing data analysis, spectrum, viral genomes Galaxy, Tuberculosis Sequence Analysis, Concepts, drug-resistance, prediction, mutation-based, clustering Galaxy, Tuberculosis Sequence Analysis, Identifying, tuberculosis transmission, links, SNPs, transmission clusters Galaxy, Tuberculosis Sequence Analysis, Implementation, NGS, TB- WHO, documents, considerations Galaxy, Tuberculosis Sequence Analysis, Tuberculosis, Variant Analysis …
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Maturity Model for Pathogen Data Platforms
Data platform Maturity model Pathogens Personal metadata ELIXIR-CONVERGE BY-COVID Workshop SARS-CoV-2 Bacterial FAIRness
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FAIRsharing for you: journal publishers
FAIRsharing standards databases policies FAIR
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Submitting sequence data to ENA
Submitting submission sequence data ENA
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FAIRsharing for you: researchers
FAIRsharing standards databases policies FAIR
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FAIRsharing content: standards overview
FAIRsharing standards databases policies FAIR
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Pathway analysis with the MINERVA Platform
Pathway analysis MINERVA Platform
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ENA : SARS-CoV-2 Submission Workshop
sequencing data ena archive
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FAIR Cookbook: hands-on recipes to make and keep data FAIR
FAIRcookbook FAIR recipes
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WP3 Discoverability hackathon v2 on Feb 8th
COVID-19 Data Portal Knowledge Molecular biology Clinical data Socioeconomic data EOSC ecosystem Hackathons Metadata FAIRsharing Social sciences
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GTN Smörgåsbord 2: Tapas - A Very Short Introduction to Galaxy
Automation, Galaxy workflows, command line Galaxy Galaxy 101 Galaxy, Accelerating Research, data sharing Galaxy, Case Studies, SARS-COV-2 data Galaxy, Customising, customise, ObservableHQ Galaxy, Mutation calling, viral genome reconstruction, lineage assignment, clade assignment, SARS-CoV-2 sequencing data Galaxy, NGS Galaxy, Pandemics Research, Mass Spectrometry, MS Galaxy, Quality control, QC …
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GTN Smörgåsbord 3: FAIR data and provenance with RO-Crate and Galaxy - Building RO-Crates - An overview of the RO-Crate concept and its implementations
Galaxy, FAIR data, data provenance, RO-Crate, Publishing Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, GitHub repositories Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, Submitting workflows, LifeMonitor Galaxy, FAIR data, data provenance, RO-Crate, Publishing, Workflow, Registering, WorkflowHub Galaxy, FAIR data, data provenance, RO-Crate, Python Galaxy, FAIR data, data provenance, RO-Crate, RO-Crate concept, RO-Crate implementations Galaxy, FAIR data, data provenance, RO-Crate, Workflow Run, RO-Crate Introduction
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BY-COVID Spring 24 Baseline Use Case Workshop
Baseline Use Case Real-world data Policy questions SARS-CoV-2 vaccination real world data source vaccination effectiveness
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Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
Mutation calling viral genome genome reconstruction lineage assignment clade assignment SARS-CoV-2 sequencing data
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FAIRsharing content: databases overview
FAIRsharing standards databases policies FAIR
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FAIRsharing in a nutshell
FAIRsharing standards databases policies FAIR
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FAIRsharing for you: libraries and trainers
FAIRsharing standards databases policies FAIR
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Data sharing and reuse under GDPR - BY-COVID Fest workshop report
FAIR GDPR privacy Research Data Management
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Euro-BioImaging's Guide to FAIR BioImage Data 2024
FAIR Bioimage Data management
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Challenges and issues in data management
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit …
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FAIRsharing for you: funders
FAIRsharing standards databases policies FAIR
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FAIRsharing for you: societies and alliances
FAIRsharing standards databases policies FAIR
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European Nucleotide Archive - Quick Tour
sequencing data ena archive
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Unlocking the Power of Metadata
metadata
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Removal of human reads from SARS-CoV-2 sequencing data
Removal human reads SARS-CoV-2 sequencing data
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Avian influenza viral strain analysis from gene segment sequencing data
Avian influenza viral strain analysis gene segment sequencing data
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Data management in life sciences with RDMkit
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit …
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Euro-BioImaging's Guide to FAIR BioImage Data 2023
FAIR Bioimage Data management
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Data management in social sciences and humanities with DMEG
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit …
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Pox virus genome analysis from tiled-amplicon sequencing data
Pox virus genome analysis tiled-amplicon sequencing data
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