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Showing 30 materials out of 76

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Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
IFB Shiny training

•• intermediate
R-programming Reproducible Science
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling
e-learning

Cellosaurus : A resource on cell lines

• beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
e-learning

neXtProt : Exploring human proteins

• beginner
Proteins Proteomics Proteins (proteins) human
e-learning

Explore and Visualize Your Data with Python

•• intermediate
Data visualisation Bioinformatics Python Data analysis
Video, E-learning

FAIR principles in practice for health data

• beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability
Video, Training materials, Mock data, E-learning

RDF Schema and Data Visualization

• beginner
Data visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data
Video, Training materials, E-learning

Validate Graph Data with SHACL

•• intermediate
Medical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation
Video, Training materials, E-learning

Semantic Standards

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR Standards Ontology SNOMED CT LOINC ATC CHOP ICD Interoperability
Video, Training materials, E-learning

Expanding the SPHN RDF Schema

• beginner
Ontology and terminology Medical informatics FAIR data Data management Computer science Editing Ontology visualisation Visualisation Data handling Clinical data Data semantics FAIR Ontology editing Protegé RDF OWL
Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology
Video, Training materials with mock data, e-learning

Querying Data with SPARQL

• beginner
Computer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability
Video, E-Learning

How to create a concept for the SPHN Dataset

• beginner
Computer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization
e-learning

Retrieve and list information on SARS-CoV-2 from ViralZone

• beginner
Virology Molecular biology SARS-CoV-2
e-learning

Interpret phylogenetic data to track SARS-CoV-2 evolution

• beginner
Virology Phylogenetics SARS-CoV-2
e-learning

Find out about SARS-CoV-2 glycobiology using GlyConnect

• beginner
Virology Protein sites, features and motifs SARS-CoV-2
e-learning

Use V-pipe to evaluate SARS-CoV-2 sequence variability

• beginner
Virology Sequence analysis SARS-CoV-2 Variant calling
e-learning

Make sense of COVID-19 data

• beginner
Virology Data visualisation SARS-CoV-2
e-learning

High Performance Computing in Life Sciences

•• intermediate
Computational biology High performance computing Data storage
Video, E-Learning

SPHN Schema Forge: How to automatically generate semantic artefacts from the SPHN Dataset Template

•• intermediate
Computer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template
Video, E-learning

FAIRification of external terminologies

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology
Video, Training materials, Mock data, E-learning

How to use Python and R with RDF Data

•• intermediate
Computer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB
e-learning

ViralZone: Studying viral diversity

• beginner
Virology Genomics Molecular biology virology
Course design: Considerations for trainers – a Professional Guide

Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
Video

ELIXIR-CONVERGE - The why of research data management

• beginner
Data management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE
e-learning

BLAST and multiple sequence alignment (MSA) programs

• beginner
Sequence analysis Blast Multiple sequence alignment
BLAST and multiple sequence alignment (MSA) programs

• beginner
Blast E learning Multiple sequence alignment

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SIB Swiss Institute of Bioinformatics

The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international...

73 training materials

14 events (425 past events)

SIB Swiss Institute of Bioinformatics http://www.sib.swiss/training/training-group https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib_logo_medium.jpg?1662299701

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ELIXIR node

Country

Status

Training coordinator

How to use V-pipe (SARS-CoV-2 data)

IFB Shiny training

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

neXtProt : Exploring human proteins

Explore and Visualize Your Data with Python

FAIR principles in practice for health data

RDF Schema and Data Visualization

Validate Graph Data with SHACL

Semantic Standards

Expanding the SPHN RDF Schema

Training Primer (RDF and SPARQL)

Querying Data with SPARQL

How to create a concept for the SPHN Dataset

Retrieve and list information on SARS-CoV-2 from ViralZone

Interpret phylogenetic data to track SARS-CoV-2 evolution

Find out about SARS-CoV-2 glycobiology using GlyConnect

Use V-pipe to evaluate SARS-CoV-2 sequence variability

Make sense of COVID-19 data

High Performance Computing in Life Sciences

SPHN Schema Forge: How to automatically generate semantic artefacts from the SPHN Dataset Template

FAIRification of external terminologies

How to use Python and R with RDF Data

ViralZone: Studying viral diversity

Course design: Considerations for trainers – a Professional Guide

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

High Performance Computing (HPC) in Life Sciences

ELIXIR-CONVERGE - The why of research data management

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

Introduction to High-performance Computing (sciCORE Cluster)

Docker and Singularity for Reproducible Research: Getting Started with Containers

Enrichment Analysis

Statistics and Machine Learning for Life Sciences

Single-cell Transcriptomics

Introduction to Machine Learning with Python

NGS - Genome Variant Analysis

First Steps with R in Life Sciences

Using ASAP for Single-Cell Analysis

Data Visualisation with R

Data Analysis and Representation in Python

Optimizing Python Code for Better Performance

Version Control with Git

NGS - Quality Control, Alignment, Visualisation

SIB Swiss Institute of Bioinformatics