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Showing 30 materials out of 851

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When immunology meets bioinformatics

• beginner
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

Mutation calling viral genome genome reconstruction lineage assignment clade assignment SARS-CoV-2 sequencing data
e-learning

Data Repositories for Bioinformatics

• beginner
Data management Online Repository Data reuse Data mining FAIR Data
Using Large Language Models for Biodata Exploration: From Theory to Practice

• beginner
machine learning mark ibberson group training
theislab/single-cell-tutorial

RNA-Seq Single-cell sequencing Transcriptomics Python RNA-seq
RockefellerUniversity/RU_VisualizingGenomicsData

Data visualisation Genomics Data visualization R
opensciency/sprint-content

Data management FAIR data
bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23

Sequencing RNA-Seq Single-cell sequencing Transcriptomics R Next generation sequencing RNA-seq
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Course design: Considerations for trainers – a Professional Guide

Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
ncl-icbam/ismb-tutorial-2023

Sequencing Transcriptomics Next generation sequencing Spatial transcriptomics
IFB Shiny training

•• intermediate
R-programming Reproducible Science
RockefellerUniversity/RU_tidyverse_core

R script R
e-learning

BLAST and multiple sequence alignment (MSA) programs

• beginner
Sequence analysis Blast Multiple sequence alignment
Docker and Singularity for Reproducible Research: Getting Started with Containers

• beginner
reproducibility container data management data security high-performance computing
BLAST and multiple sequence alignment (MSA) programs

• beginner
Blast E learning Multiple sequence alignment
hadley/r4ds

R script Quarto R Data science
jeroenjanssens/data-science-at-the-command-line

Unix/Linux
WCSCourses/SARS-COV-2_B4B

Genomics Variant pattern analysis Unix/Linux Variant analysis
bioinformaticsdotca/MET_2023

Metabolomics
e-learning

UNIX Fundamentals

• beginner
Computer science Problem based learning Programming Unix
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
e-learning

neXtProt : Exploring human proteins

• beginner
Proteins Proteomics Human biology
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling
tidyverse/datascience-box

R script R Data science
e-learning

Cellosaurus : A resource on cell lines

• beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
Vital-IT Infrastructure Usage
e-learning

Explore and Visualize Your Data with Python

•• intermediate
Data visualisation Bioinformatics Python Data analysis
haibol2016/ATACseqQCWorkshop

Epigenetics ATAC-seq

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When immunology meets bioinformatics

Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

Data Repositories for Bioinformatics

Using Large Language Models for Biodata Exploration: From Theory to Practice

theislab/single-cell-tutorial

RockefellerUniversity/RU_VisualizingGenomicsData

opensciency/sprint-content

bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23

How to use V-pipe (SARS-CoV-2 data)

Course design: Considerations for trainers – a Professional Guide

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

ncl-icbam/ismb-tutorial-2023

IFB Shiny training

RockefellerUniversity/RU_tidyverse_core

BLAST and multiple sequence alignment (MSA) programs

Docker and Singularity for Reproducible Research: Getting Started with Containers

BLAST and multiple sequence alignment (MSA) programs

hadley/r4ds

jeroenjanssens/data-science-at-the-command-line

WCSCourses/SARS-COV-2_B4B

bioinformaticsdotca/MET_2023

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

tidyverse/datascience-box

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

haibol2016/ATACseqQCWorkshop

Interactive Visualization with Python

Introduction to Machine Learning with Python

Using Large Language Models for Biodata Exploration: From Theory to Practice

When immunology meets bioinformatics

Data Analysis and Representation in Python

Single-Cell Transcriptomics with R

First Steps with Python in Life Sciences

First Steps with Python in Life Sciences

Diving into deep learning - theory and applications with PyTorch

NGS - Quality Control, Alignment, Visualisation

Snakemake for Reproducible Research: Getting Started with Workflows

Docker and Singularity for Reproducible Research: Getting Started with Containers

NGS - Genome Variant Analysis

UNIX Shell Scripting in Life Sciences

Version Control with Git

Cancer Variant Analysis

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Enrichment Analysis

First Steps with R in Life Sciences

Federated Learning in Bioinformatics

Introduction to NGS ATAC-seq data analysis

Reproducible Research and Data Analysis using Nextflow Pipelines

Introduction to Sequencing Data Analysis

Introduction to High-performance Computing (sciCORE Cluster)

Best Practices for Investigating Gene Expression Differences by Biological Sex

Optimizing Python Code for Better Performance

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Introduction to NGS ATAC-seq data analysis

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Data Analysis and Representation in Python

SIB Swiss Institute of Bioinformatics

Glittr.org

BY-COVID