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RockefellerUniversity/Bioconductor_Introduction

R script R
ELIXIREstonia/2025-04-28-R-basic-stat

Statistics and probability R Statistics
ELIXIREstonia/2025-02-11-Python

Python script Python
ELIXIREstonia/2025-01-29-EDA

Data visualisation Data visualization R
e-learning

Data Repositories for Bioinformatics

• beginner
Data management Online Repository Data reuse Data mining FAIR Data
Using Large Language Models for Biodata Exploration: From Theory to Practice

• beginner
machine learning mark ibberson group training
theislab/single-cell-tutorial

RNA-Seq Single-cell sequencing Transcriptomics Python RNA-seq
RockefellerUniversity/RU_VisualizingGenomicsData

Data visualisation Genomics Data visualization R
opensciency/sprint-content

Data management FAIR data
bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23

Sequencing RNA-Seq Single-cell sequencing Transcriptomics R Next generation sequencing RNA-seq
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Course design: Considerations for trainers – a Professional Guide

Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
ncl-icbam/ismb-tutorial-2023

Sequencing Transcriptomics Next generation sequencing Spatial transcriptomics
IFB Shiny training

•• intermediate
R-programming Reproducible Science
Population Genetics Notes

Population genetics
k-mer approaches for biodiversity genomics

Genomics Genome assembly Assembly Evaluation Quality Control
EMBO 24 Genome Sequencing Course

Genomics Genome assembly Sequence read processing Galaxy Long read sequencing
BRAKER-TSEBRA-Workshop

Genome annotation
Genome Assembly Workshop - EBP-NOR

Genome assembly Software engineering Unix/Linux High performance computing
ccgproject/ccgp_assembly

Genome assembly Conservation genomics Unix/Linux Next generation sequencing
ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop

Genome assembly Genomics Sequence read processing Software engineering Long read sequencing High performance computing Next generation sequencing
ebp-nor/workshop-2024

Genome annotation Genome assembly Comparative genomics
BUSCO - from QC to gene prediction and phylogenomics

Genome annotation Assembly Evaluation
Easel Annotation - Functional and Structural Annotation

Genomics Transcriptomics
Speciation & Population Genomics: a how-to-guide

Genomics Genetic variation analysis Population genetics Variant analysis
SBGC Bioinformatics Course

Software engineering Genomics Genome assembly Genome annotation High performance computing Next generation sequencing
Hands-on: Genome annotation with Maker / Genome annotation with Maker / Genome Annotation

Genome annotation Galaxy
Hands-on: Functional annotation of protein sequences / Functional annotation of protein sequences / Genome Annotation

Genome annotation Galaxy
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi - YouTube

Genomics Genome assembly Sequence read processing Long read sequencing

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RockefellerUniversity/Bioconductor_Introduction

ELIXIREstonia/2025-04-28-R-basic-stat

ELIXIREstonia/2025-02-11-Python

ELIXIREstonia/2025-01-29-EDA

Data Repositories for Bioinformatics

Using Large Language Models for Biodata Exploration: From Theory to Practice

theislab/single-cell-tutorial

RockefellerUniversity/RU_VisualizingGenomicsData

opensciency/sprint-content

bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23

How to use V-pipe (SARS-CoV-2 data)

Course design: Considerations for trainers – a Professional Guide

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

ncl-icbam/ismb-tutorial-2023

IFB Shiny training

Population Genetics Notes

k-mer approaches for biodiversity genomics

EMBO 24 Genome Sequencing Course

BRAKER-TSEBRA-Workshop

Genome Assembly Workshop - EBP-NOR

ccgproject/ccgp_assembly

ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop

ebp-nor/workshop-2024

BUSCO - from QC to gene prediction and phylogenomics

Easel Annotation - Functional and Structural Annotation

Speciation & Population Genomics: a how-to-guide

SBGC Bioinformatics Course

Hands-on: Genome annotation with Maker / Genome annotation with Maker / Genome Annotation

Hands-on: Functional annotation of protein sequences / Functional annotation of protein sequences / Genome Annotation

Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi - YouTube

Interactive Visualization with Python

Introduction to Machine Learning with Python

Using Large Language Models for Biodata Exploration: From Theory to Practice

When immunology meets bioinformatics

Data Analysis and Representation in Python

Single-Cell Transcriptomics with R

Genome Annotation Workshop 2026 | Earlham Institute

Introduction to RNA-seq and functional interpretation | EMBL-EBI Training

Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training

Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training

2026 Workshop on Genomics, Cesky Krumlov - Evolution and Genomics

Genomics for Biodiversity Conference - from genomes to impact

Bioinformatics analysis of biological sequences 2025-2026

Strategies for citizen engagement in science communication 2025-2026

Course: Plant Genome Sequence Assembly and Annotation

From Gene Models to Biological Insights - Functional Annotation

Diving into deep learning - theory and applications with PyTorch

NGS - Quality Control, Alignment, Visualisation

Snakemake for Reproducible Research: Getting Started with Workflows

Docker and Singularity for Reproducible Research: Getting Started with Containers

UNIX Shell Scripting in Life Sciences

Version Control with Git

Introduction to Sequencing-based Spatial Transcriptomics Data Analysis

Enrichment Analysis

First Steps with R in Life Sciences

Cancer Variant Analysis

ELIXIR-GOBLET Train-the-Trainer

Introduction to NGS ATAC-seq data analysis

Reproducible and Scalable Research with Snakemake and Software Containers

Introduction to Sequencing Data Analysis

SIB Swiss Institute of Bioinformatics

Glittr.org

BY-COVID

ERGA Knowledge Hub