Switzerland
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UNIX Fundamentals
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ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
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Vital-IT Infrastructure Usage
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R Basics Quiz
• beginner -
e-learning
UNIX Fundamentals
• beginnerComputer science Problem based learning Programming Unix -
High Performance Computing in Life Sciences
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Tutorial, Slideshow, e-learning
High Performance Computing (HPC) in Life Sciences
• beginnerComputer science Bioinformatics Biology High performance computing high-performance computing -
e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
Querying SIB resources with SPARQL
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
IFB Shiny training
•• intermediateR-programming Reproducible Science -
Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material -
Course design: Considerations for trainers – a Professional Guide
Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
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BioMedIT: Information Security Awareness Training
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e-learning
neXtProt : Exploring human proteins
• beginnerProteins Proteomics Human biology -
Cybersecurity Quiz for SIB employees only (internal use)
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Explore and visualize your data with Python
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SARS-CoV-2 : Studying a new virus
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Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data … -
Cellosaurus : A resource on cell lines
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Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data … -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF … -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval … -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR … -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data … -
Getting Started With BioMedIT
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Workshops and courses
Interactive Visualization with Python
18 November 2025 @ 09:00 - 17:00
Online
data visualisation training torsten schwede & thierry sengstag group -
Workshops and courses
Data Analysis and Representation in Python
10 November 2025 @ 09:00 - 17:00
Online
programming data analysis training data visualisation torsten schwede & thierry sengstag group mark ibberson group -
Workshops and courses
Single-Cell Transcriptomics with R
12 - 14 November 2025
Bellinzona, Switzerland
Face-to-face
genes and genomes biochemistry biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics luciano cascione group rémy bruggmann group -
Workshops and courses
Introduction to RNA-seq and functional interpretation | EMBL-EBI Training
9 - 13 February 2026
Face-to-face
RNA-Seq Transcriptomics Genome annotation RNA-seq Next generation sequencing -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training
17 - 21 November 2025
Face-to-face
Genomics Genetic variation analysis Sequence read processing Next generation sequencing Variant analysis Long read sequencing -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training
16 - 20 November 2026
Face-to-face
Sequence read processing Next generation sequencing Long read sequencing -
Workshops and courses
2026 Workshop on Genomics, Cesky Krumlov - Evolution and Genomics
11 - 24 January 2026
Face-to-face
Genomics -
Workshops and courses
Genomics for Biodiversity Conference - from genomes to impact
29 - 31 October 2025
Face-to-face
Genomics Stakeholders Conservation genomics -
Workshops and courses
Strategies for citizen engagement in science communication 2025-2026
13 - 17 April 2026
Face-to-face
Citizen Science Science Communication -
Workshops and courses
From Gene Models to Biological Insights - Functional Annotation
10 - 12 December 2025
Face-to-face
Genome annotation -
Workshops and courses
When immunology meets bioinformatics
24 October 2025 @ 09:00 - 17:00
Online
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Workshops and courses
Bioinformatics analysis of biological sequences 2025-2026
5 - 9 January 2026
Face-to-face
Genomics Sequence read processing Genome assembly Genome annotation Phylogenetics Functional genomics Long read sequencing Phylogenetics / Phylogenomics Next generation sequencing Functional Genomics -
Workshops and courses
Genome Annotation Workshop 2026 | Earlham Institute
28 - 30 April 2026
Face-to-face
Genome annotation -
Workshops and courses
Diving into deep learning - theory and applications with PyTorch
1 - 2 December 2025
Online
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Workshops and courses
NGS - Quality Control, Alignment, Visualisation
19 - 21 November 2025
Bern, Switzerland
Face-to-face
training genes and genomes next generation sequencing environmental science medicine and health -
Workshops and courses
UNIX Shell Scripting in Life Sciences
5 - 26 November 2025
Online
programming training mark ibberson group -
Workshops and courses
Version Control with Git
28 - 29 October 2025
Online
programming reproducibility data management training -
Workshops and courses
Enrichment Analysis
28 November 2025 @ 09:00 - 17:00
Online
biostatistics experimental biology functional genomics genes and genomes training raphael gottardo group -
Workshops and courses
Introduction to Sequencing-based Spatial Transcriptomics Data Analysis
9 - 10 December 2025
Bern, Switzerland
Face-to-face
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Workshops and courses
Cancer Variant Analysis
12 December 2025 @ 09:00 - 17:00
Online
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Workshops and courses
ELIXIR-GOBLET Train-the-Trainer
24 - 27 November 2025
Online
training community outreach ELIXIR-GOBLET Train-the-Trainer Train the Trainer #ELIXIR-GOBLET-Train-the-Trainer -
Workshops and courses
Introduction to Sequencing Data Analysis
19 - 21 November 2025
Bern, Switzerland
Face-to-face
training genes and genomes next generation sequencing environmental science medicine and health -
Workshops and courses
Pangenome graphs as a new paradigm in comparative genomics | EMBL-EBI Training
5 November 2025 @ 09:00 - 17:00
Face-to-face
Pangenomes -
Workshops and courses
Pangenome annotations and resources in Ensembl | EMBL-EBI Training
12 November 2025 @ 09:00 - 17:00
Face-to-face
Genome annotation Pangenomes -
Workshops and courses
Best Practices for Investigating Gene Expression Differences by Biological Sex
27 October 2025 @ 09:00 - 17:00
Online
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Workshops and courses
Optimizing Python Code for Better Performance
11 November 2025 @ 09:00 - 17:00
Online
programming training torsten schwede & thierry sengstag group mark ibberson group -
Workshops and courses
Single-Cell Transcriptomics with R
12 - 14 November 2025
Bellinzona, Switzerland
Face-to-face
genes and genomes biochemistry biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics luciano cascione group rémy bruggmann group -
Workshops and courses
Data Visualisation with R
15 - 16 December 2025
Zürich, Switzerland
Face-to-face
data visualisation basic research training -
Workshops and courses
Data Analysis and Representation in Python
10 November 2025 @ 09:00 - 17:00
Online
programming data analysis training data visualisation torsten schwede & thierry sengstag group mark ibberson group -
Workshops and courses
Ensuring More Accurate, Generalisable, and Interpretable Machine Learning Models for Bioinformatics
17 November 2025 @ 09:00 - 17:00
Online
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SIB Swiss Institute of Bioinformatics
The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international...
105 training materials20 events (584 past events)SIB Swiss Institute of Bioinformatics http://www.sib.swiss/training/training-group https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib_logo_medium.jpg?1662299701 -
Glittr.org
Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab.
723 training materialsGlittr.org https://glittr.org https://tess.elixir-europe.org/content_providers/glittr-org Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab. /system/content_providers/images/000/000/692/original/logo-with-domain.png?1698843802 -
BY-COVID
BeYond-COVID (BY-COVID) aims to provide comprehensive open data on SARS-CoV-2 and other infectious diseases across scientific, medical, public health and policy domains. It strongly emphasises mobilising raw viral sequences, helping to identify and monitor the spread of SARS-CoV-2 variants. The...
31 training materialsBY-COVID https://by-covid.org https://tess.elixir-europe.org/content_providers/by-covid BeYond-COVID (BY-COVID) aims to provide comprehensive open data on SARS-CoV-2 and other infectious diseases across scientific, medical, public health and policy domains. It strongly emphasises mobilising raw viral sequences, helping to identify and monitor the spread of SARS-CoV-2 variants. The project further accelerates access to SARS-CoV-2 and COVID-19 and linking patient and research data. To ensure interoperability of national and global efforts, BY-COVID enables federated data analysis compliant with data protection regulations, harmonise and manage metadata and sample identifiers, and facilitate long-term cataloguing. In an unprecedented and unique interdisciplinary effort, BY-COVID brings together 53 partners from 19 countries and stakeholders from the biomedical field, hospitals, public health, social sciences and humanities. Ultimately, it will improve European readiness for future pandemics, enhance genomic surveillance and rapid-response capabilities. In addition, BY-COVID serves as a demonstrator of interdisciplinary work across country borders. The project's outputs will allow scientists across multiple domains, including SMEs and industry, to access varied data with the potential to generate new knowledge on infectious diseases. /system/content_providers/images/000/000/810/original/BYCOVID_logo.png?1727690329 -
ERGA Knowledge Hub
The ERGA Knowledge Hub is an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas (ERGA) Community where you can share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and...
118 training materials12 events (2 past events)ERGA Knowledge Hub https://knowledge.erga-biodiversity.eu/ https://tess.elixir-europe.org/content_providers/erga-knowledge-hub The ERGA Knowledge Hub is an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas (ERGA) Community where you can share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language. /system/content_providers/images/000/000/827/original/ERGA-KH.png?1758638186
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