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  • Swiss Institute of Bioinformatics

    The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of...

    5 training materials
    32 upcoming events (101 past events)
    Swiss Institute of Bioinformatics https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib.png?1469458452
    • Showing 5 materials.
    Vital-IT Infrastructure Usage

    How to efficiently use Vital-IT hardware and software infrastructure.

    Vital-IT Infrastructure Usage https://tess.elixir-europe.org/materials/vital-it-infrastructure-usage How to efficiently use Vital-IT hardware and software infrastructure.
    R basics

    How to learn R basics

    R basics https://tess.elixir-europe.org/materials/r-basics How to learn R basics
    Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

    The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction...

    Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace https://tess.elixir-europe.org/materials/introduction-to-3d-structure-visualization-and-homology-modeling-using-the-swiss-model-workspace The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction using the Swiss-Model expert system for homology modeling.
    High Performance Computing in Life Sciences

    No description provided.

    High Performance Computing in Life Sciences https://tess.elixir-europe.org/materials/high-performance-computing-in-life-sciences No description provided.
    UNIX Fundamentals

    This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.

    UNIX Fundamentals https://tess.elixir-europe.org/materials/unix-fundamentals This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience. 2014-01-13
    Showing 30 upcoming events out of 31. Found 101 past events. View all results.

    • Introduction to R Shiny

      6 May 2019

      Zurich, Switzerland

      Elixir node event
      Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2019-05-06 09:00:00 UTC 2019-05-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • ELIXIR-SIB Data Carpentry with R - Genomics curriculum

      1 - 2 July 2019

      Zurich, Switzerland

      Elixir node event
      ELIXIR-SIB Data Carpentry with R - Genomics curriculum https://tess.elixir-europe.org/events/elixir-sib-data-carpentry-with-r ELIXIR-EXCELERATE is funded by the European Commission within the Research Infrastructures programme of Horizon 2020, grant agreement number 676559 Overview This workshop is hosted by the SIB Swiss Institute of Bioinformatics and the 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • SPHN Data Privacy and IT Security Training

      2 April 2019

      Basel, Switzerland

      Elixir node event
      SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training-df60adc9-02da-4152-a56d-f3d5fa73078d Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2019-04-02 09:00:00 UTC 2019-04-02 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Clinical bioinformatics for microbial genomics and metagenomics - ESCMID, CHUV, SIB

      9 - 12 September 2019

      Lausanne, Switzerland

      Elixir node event
      Clinical bioinformatics for microbial genomics and metagenomics - ESCMID, CHUV, SIB https://tess.elixir-europe.org/events/clinical-bioinformatics-for-microbial-genomics-and-metagenomics-escmid-chuv-sib More information soon 2019-09-09 09:00:00 UTC 2019-09-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Joint SIB / SciLifeLab Autumn School Single Cell

      13 - 18 October 2019

      Leysin, Switzerland

      Elixir node event
      Joint SIB / SciLifeLab Autumn School Single Cell https://tess.elixir-europe.org/events/joint-sib-scilifelab-autumn-school-single-cell More information soon 2019-10-13 09:00:00 UTC 2019-10-18 00:00:00 UTC SIB, Leysin, Switzerland SIB Leysin Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Introduction to R Shiny

      2 May 2019

      Lausanne, Switzerland

      Elixir node event
      Introduction to R Shiny https://tess.elixir-europe.org/events/shiny Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2019-05-02 09:00:00 UTC 2019-05-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Single-cell RNA-Seq Analysis

      28 - 29 November 2019

      Bern, Switzerland

      Elixir node event
      Single-cell RNA-Seq Analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-daefd42f-71d5-4c9e-bd4a-1e897d3198a7 More information soon 2019-11-28 09:00:00 UTC 2019-11-29 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Live Long-Read sequencing and analysis!

      15 - 17 May 2019

      Fribourg, Switzerland

      Elixir node event
      Live Long-Read sequencing and analysis! https://tess.elixir-europe.org/events/live-long-read-sequencing-and-analysis More information soon 2019-05-15 09:00:00 UTC 2019-05-17 00:00:00 UTC SIB, Fribourg, Switzerland SIB Fribourg Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Introduction to high-performance computing (sciCORE cluster)

      19 June 2019

      Basel, Switzerland

      Elixir node event
      Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-cac27254-dfeb-42a0-a82c-1ae2209b38c4 Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2019-06-19 09:00:00 UTC 2019-06-19 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • First Steps in Parallelization with OpenMP

      8 May 2019

      Basel, Switzerland

      Elixir node event
      First Steps in Parallelization with OpenMP https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-1bbfd630-8e6e-424b-93c3-692f1df61027 Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. In order to benefit from this computational power we need to devise programs explicitly written for parallel machines. 2019-05-08 09:00:00 UTC 2019-05-08 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • ELIXIR-EXCELERATE Train the trainer

      8 - 10 May 2019

      Basel, Switzerland

      Elixir node event
      ELIXIR-EXCELERATE Train the trainer https://tess.elixir-europe.org/events/elixir-excelerate-train-the-trainer-7b9d0389-490f-46f6-89af-697c998d655e ELIXIR-EXCELERATE is funded by the European Commission within the Research Infrastructures programme of Horizon 2020, grant agreement number 676559 Overview This course offers guidance, ideas and tips for designing training/teaching, 2019-05-08 09:00:00 UTC 2019-05-10 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Best practices in HPC (sciCORE cluster)

      27 March 2019

      Basel, Switzerland

      Elixir node event
      Best practices in HPC (sciCORE cluster) https://tess.elixir-europe.org/events/best-practices-in-hpc-scicore-cluster Overview This one-day course is a follow-up to the sciCORE course "Introduction to HPC (sciCORE cluster)". 2019-03-27 09:00:00 UTC 2019-03-27 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Statistics for Life Scientists

      2 - 4 December 2019

      Basel, Switzerland

      Elixir node event
      Statistics for Life Scientists https://tess.elixir-europe.org/events/statistics-for-life-scientists-e25eb89a-c498-4fa4-8a59-fda57cfb60d8 Overview Statistics are an integral aspect of scientific research, particularly for the life sciences which rely heavily on quantitative methodologies. 2019-12-02 09:00:00 UTC 2019-12-04 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • First steps with R in Life Sciences

      2 - 3 April 2019

      Lausanne, Switzerland

      Elixir node event
      First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-be891d7c-9d78-4af4-a585-a82bfdbe1eb7 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2019-04-02 09:00:00 UTC 2019-04-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • First Steps with UNIX in Life Sciences

      25 September 2019

      Lausanne, Switzerland

      Elixir node event
      First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-4430cc52-cd66-4a18-89c1-dc7e7fbe1bc1 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2019-09-25 09:00:00 UTC 2019-09-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Introduction to RNA-Seq

      21 - 22 October 2019

      Basel, Switzerland

      Elixir node event
      Introduction to RNA-Seq https://tess.elixir-europe.org/events/introduction-to-rna-seq-9b1ad1ee-b319-4f6e-bdeb-6b6a297145b2 Overview This two-day course will present the theory and bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-10-21 09:00:00 UTC 2019-10-22 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • First Steps with UNIX in Life Sciences

      28 May 2019

      Lausanne, Switzerland

      Elixir node event
      First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-36cb482a-4e6a-4f85-a4f9-2f53b42cdea7 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2019-05-28 09:00:00 UTC 2019-05-28 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Advanced Statistics: Statistical Modeling

      19 - 22 August 2019

      Lausanne, Switzerland

      Elixir node event
      Advanced Statistics: Statistical Modeling https://tess.elixir-europe.org/events/advanced-statistics-statistical-modeling-5ff40dcd-dad2-46c2-a6d6-4a7c8b8d65a6 Overview While the statistical models and tools presented in an introductory statistics course (such as linear regression) can be used to answer a wide range of questions in life sciences, many types of data can not be analyzed using these tools. 2019-08-19 09:00:00 UTC 2019-08-22 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • NGS - Quality control, Alignment, Visualisation

      12 - 14 June 2019

      Bern, Switzerland

      Elixir node event
      NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-ae907af5-87b3-4a91-a5d2-754012a06b7e Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. However, it often results in hundreds of Gbs of data making the downstream analysis very challenging and requires bioinformatics skills. 2019-06-12 09:00:00 UTC 2019-06-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Intermediate stats: data analysis in practice

      8 - 9 April 2019

      Lausanne, Switzerland

      Elixir node event
      Intermediate stats: data analysis in practice https://tess.elixir-europe.org/events/intermediate-stats-data-analysis-in-practice-c75a1c84-c1c3-4f2d-ae68-1d6b39e2a6c3 Overview Do you feel unable to statistically analyse data, despite having already followed an introduction course on statistics ? If yes, this course was created for you. 2019-04-08 09:00:00 UTC 2019-04-09 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • NGS - Genome variant analysis

      29 - 30 April 2019

      Bern, Switzerland

      Elixir node event
      NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-61e3f31b-dcd2-48bf-b446-9a115382b002 Overview Among other genomic applications, Whole genome sequencing “WGS”, Whole Exome Sequencing “WES” and RNA sequencing are used for the detection of genomic variants. 2019-04-29 09:00:00 UTC 2019-04-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • First steps with R in Life Sciences

      8 - 9 October 2019

      Lausanne, Switzerland

      Elixir node event
      First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-31722d33-fefc-4aaa-a004-cd69bbab054e Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2019-10-08 09:00:00 UTC 2019-10-09 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Statistical methods for big data in life sciences and health with R

      3 - 6 June 2019

      Lausanne, Switzerland

      Elixir node event
      Statistical methods for big data in life sciences and health with R https://tess.elixir-europe.org/events/statistical-methods-for-big-data-in-life-sciences-and-health-with-r Overview In this course, biologists, computational biologists and bioinformatics scientists will acquire the key competencies that they need when dealing with big data from the health and life sciences fields. 2019-06-03 09:00:00 UTC 2019-06-06 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Intermediate R

      9 - 11 December 2019

      Basel, Switzerland

      Elixir node event
      Intermediate R https://tess.elixir-europe.org/events/intermediate-r-ec2abb58-3433-4f1a-9ba4-b04b28549eeb Overview This 3-day intermediate course will move beyond simple scripts/recipes towards a more systematic understanding of R and its data structures. 2019-12-09 09:00:00 UTC 2019-12-11 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Docker for reproducible computational research

      13 May 2019

      Bern, Switzerland

      Elixir node event
      Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research-4fbe7a5a-06bb-4c5f-8ae1-4fed251567d8 Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2019-05-13 09:00:00 UTC 2019-05-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Introduction to openBIS

      7 May 2019

      Lausanne, Switzerland

      Elixir node event
      Introduction to openBIS https://tess.elixir-europe.org/events/introduction-to-openbis Overview openBIS is a combined data management platform, Electronic Laboratory Notebook, and Inventory Management System. 2019-05-07 09:00:00 UTC 2019-05-07 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • SIB PhD Training Network Annual Retreat

      24 - 26 June 2019

      Fribourg, Switzerland

      Elixir node event
      SIB PhD Training Network Annual Retreat https://tess.elixir-europe.org/events/sib-phd-training-network-annual-retreat-09268123-5621-4f87-b0bd-7ed24ab7783e This course is exclusively reserved to the members of the SIB PhD Training Network. 2019-06-24 09:00:00 UTC 2019-06-26 00:00:00 UTC SIB, Fribourg, Switzerland SIB Fribourg Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

      12 December 2019

      Lausanne, Switzerland

      Elixir node event
      High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-7a057fe4-5717-4c6a-a567-ba2cb95bb755 Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2019-12-12 09:00:00 UTC 2019-12-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • RNA-seq: From quality control to pathway analysis

      23 - 24 September 2019

      Bern, Switzerland

      Elixir node event
      RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-8a09dd6b-98c7-41cd-8be2-0efc7118f049 Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-09-23 09:00:00 UTC 2019-09-24 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Best practices in programming 2019

      5 - 6 November 2019

      Basel, Switzerland

      Elixir node event
      Best practices in programming 2019 https://tess.elixir-europe.org/events/best-practices-in-programming-2019 This workshop is organised by the SIB PhD Training Network. Priority is given to its members, but is open to everyone. 2019-11-05 09:00:00 UTC 2019-11-06 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

    • Python for Life Scientists

      18 - 20 November 2019

      tbd, Switzerland

      Elixir node event
      Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-4b472965-66f4-419e-a282-bc20f5664411 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2019-11-18 09:00:00 UTC 2019-11-20 00:00:00 UTC SIB, tbd, Switzerland SIB tbd Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []