SIB Swiss Institute of Bioinformatics

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e-learning

Data Repositories for Bioinformatics

• beginner
Data management Online Repository Data reuse Data mining FAIR Data
Using Large Language Models for Biodata Exploration: From Theory to Practice

• beginner
machine learning mark ibberson group training
Multiomics Data Analysis and Integration

• beginner
data integration multiomics data analysis
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
e-learning

BLAST and multiple sequence alignment (MSA) programs

• beginner
Sequence analysis Blast Multiple sequence alignment
BLAST and multiple sequence alignment (MSA) programs

• beginner
Blast E learning Multiple sequence alignment
e-learning

UNIX Fundamentals

• beginner
Computer science Problem based learning Programming Unix
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
e-learning

neXtProt : Exploring human proteins

• beginner
Proteins Proteomics Human biology
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling
e-learning

Cellosaurus : A resource on cell lines

• beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
Vital-IT Infrastructure Usage
e-learning

Explore and Visualize Your Data with Python

•• intermediate
Data visualisation Bioinformatics Python Data analysis
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
Data Analysis and Representation in Python

•• intermediate
programming,data analysis,training,data visualisation,torsten schwede & thierry sengstag group,mark ibberson group programming,training,torsten schwede & thierry sengstag group,mark ibberson group
R Basics Quiz

• beginner
Spatial Omics Data Analysis

•• intermediate
ViralZone

Phylogenetics of animal viral pathogens

• beginner
Animal pathogens E learning Phylogenetics
Video, E-learning

FAIR principles in practice for health data

• beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework …
ISMARA: A tool to infer genome-wide regulatory interactions
Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics genes and genomes next generation sequencing transcriptomics training torsten schwede & thierry sengstag group
Querying SIB resources with SPARQL
SARS-CoV-2 : Studying a new virus
Cybersecurity Quiz for SIB employees only (internal use)
Getting Started With BioMedIT
BioMedIT: Information Security Awareness Training
Video, Training materials, E-learning

Validate Graph Data with SHACL

•• intermediate
Medical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF …
Video, Training materials with mock data, e-learning

Querying Data with SPARQL

• beginner
Computer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data …
Introduction to Bayesian Statistics with R

•• intermediate
biostatistics training

Showing 30 events out of 60 (also found 600 past events)

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Data Repositories for Bioinformatics

Using Large Language Models for Biodata Exploration: From Theory to Practice

Multiomics Data Analysis and Integration

How to use V-pipe (SARS-CoV-2 data)

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

Data Analysis and Representation in Python

R Basics Quiz

Spatial Omics Data Analysis

Phylogenetics of animal viral pathogens

FAIR principles in practice for health data

ISMARA: A tool to infer genome-wide regulatory interactions

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Querying SIB resources with SPARQL

SARS-CoV-2 : Studying a new virus

Cybersecurity Quiz for SIB employees only (internal use)

Getting Started With BioMedIT

BioMedIT: Information Security Awareness Training

Validate Graph Data with SHACL

Querying Data with SPARQL

Introduction to Bayesian Statistics with R

Introduction to High-performance Computing (sciCORE Cluster)

Introduction to Sequencing-based Spatial Transcriptomics Data Analysis

Cancer Variant Analysis

Data Visualisation with R

First Steps with Julia in Life Sciences

Introduction to Statistics and Data Visualisation with R

Introduction to Statistics and Data Visualisation with R

Introduction to GPU Programming for Life Sciences

Introduction to GPU Programming for Life Sciences

Biology-informed Integration and Visualization of Multiomics Data

Long-read Sequence Analysis

Bioinformatics of Arboviruses: Genomics, Evolution and Surveillance

Multiomics Data Analysis and Integration

First Steps with R in Life Sciences

First Steps with R in Life Sciences

First Steps with Python in Life Sciences

Nextflow in Action: Build Smarter, Faster, Reproducible Pipelines

Single-Cell Transcriptomics with R

Statistics and Machine Learning for Life Sciences

Interactive Visualization with Python

Introduction to Sequencing Data Analysis

Interactive Visualization with Python

Data Analysis and Representation in Python

First Steps with SQL for Data Science

Federated Learning in Bioinformatics

Introduction to Metagenomics Data Analysis of Microbial Communities

How to make best use of Cellosaurus

First Steps in Parallelization with OpenMP

Biodiversity Data Unlocked: Publishing in GBIF with IPT

Gene Expression made Useful Easily: Tools and Database of Bgee