Swiss Institute of Bioinformatics

The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community.

Swiss Institute of Bioinformatics https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib.png?1469458452
Showing 4 materials.

How to efficiently use Vital-IT hardware and software infrastructure.

Vital-IT Infrastructure Usage https://tess.elixir-europe.org/materials/vital-it-infrastructure-usage How to efficiently use Vital-IT hardware and software infrastructure.

How to learn R basics

Keywords: R-programming, Programming

R basics https://tess.elixir-europe.org/materials/r-basics How to learn R basics R-programming, Programming Biologists biologists

This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.

Keywords: Problem Based Learning, programming, unix

UNIX Fundamentals https://tess.elixir-europe.org/materials/unix-fundamentals This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience. Frédéric Schütz Volker Flegel Heinz Stockinger Problem Based Learning, programming, unix Bench biologists beginner bioinformaticians biocurators Clinical Scientists Graduate Students 2014-01-13

The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction...

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace https://tess.elixir-europe.org/materials/introduction-to-3d-structure-visualization-and-homology-modeling-using-the-swiss-model-workspace The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction using the Swiss-Model expert system for homology modeling.
Showing 30 upcoming events out of 34. Found 13 past events. View all results.
  • First Steps with R in Life Sciences

    12 - 13 March 2018

    Basel

    Elixir node event
    First Steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-696a4ac3-567e-4ab4-8e2f-9b69dd71c4a4 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-03-12 09:00:00 UTC 2018-03-13 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] workshops_and_courses [] []
  • SIB PhD Training Network Annual Retreat

    28 - 29 June 2018

    Bienne/Biel

    Elixir node event
    SIB PhD Training Network Annual Retreat https://tess.elixir-europe.org/events/sib-phd-training-network-annual-retreat This course is exclusively reserved to the members of the SIB PhD Training Network. 2018-06-28 09:00:00 UTC 2018-06-29 00:00:00 UTC SIB, Bienne/Biel SIB Bienne/Biel [] training@sib.swiss [] workshops_and_courses [] []
  • Python for Life Scientists

    26 - 28 February 2018

    Zurich

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-1dca1a76-eb30-49a2-a05e-29fa960e7842 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2018-02-26 09:00:00 UTC 2018-02-28 00:00:00 UTC SIB, Zurich SIB Zurich [] training@sib.swiss [] workshops_and_courses [] []
  • Workshop on Computational Biology at biology'18

    14 February 2018

    Neuchatel

    Elixir node event
    Workshop on Computational Biology at biology'18 https://tess.elixir-europe.org/events/workshop-on-computational-biology-at-biology-18 Overview SIB is co-organizing a workshop on computational biology on 14 Feb 2016 in Neuchatel, as a satellite event to Biology 2018, the annual Swiss conference on ecology, evolution, systematics and conservation. 2018-02-14 09:00:00 UTC 2018-02-14 00:00:00 UTC SIB, Neuchatel SIB Neuchatel [] training@sib.swiss [] workshops_and_courses [] []
  • Comparative Genomics

    3 - 5 September 2018

    Lausanne

    Elixir node event
    Comparative Genomics https://tess.elixir-europe.org/events/comparative-genomics Overview The aims of this course are to (i) explore key evolutionary concepts, (ii) examine different methodological approaches, and (iii) gain hands-on experience in eukaryotic comparative genomic analyses. 2018-09-03 09:00:00 UTC 2018-09-05 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Docker for reproducible computational research

    13 June 2018

    Bern

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2018-06-13 09:00:00 UTC 2018-06-13 00:00:00 UTC SIB, Bern SIB Bern [] training@sib.swiss [] workshops_and_courses [] []
  • First steps with R in Life Sciences

    6 - 7 November 2018

    Lausanne

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-f4788450-b42b-4a6a-bbb9-d0ec8c1f5f38 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-11-06 09:00:00 UTC 2018-11-07 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Advanced Statistics: Statistical Modeling

    20 - 23 August 2018

    Lausanne

    Elixir node event
    Advanced Statistics: Statistical Modeling https://tess.elixir-europe.org/events/advanced-statistics-statistical-modeling-provisional-dates Overview In this course, we will see more advanced statistical models and techniques to provide you the necessary set of tools that will enable you to analyze different types of (biological) data, beyond classical linear modeling. 2018-08-20 09:00:00 UTC 2018-08-23 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Inferring gene regulatory networks from high-throughput data with ISMARA

    23 May 2018

    Basel

    Elixir node event
    Inferring gene regulatory networks from high-throughput data with ISMARA https://tess.elixir-europe.org/events/inferring-gene-regulatory-networks-from-high-throughput-data-with-ismara Overview By modeling genome-wide gene expression and chromatin state data in terms of computationally predicted binding sites, Motif Activity Response Analysis (MARA) allows automatic inference of the key regulators, their targets, and their 2018-05-23 09:00:00 UTC 2018-05-23 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] workshops_and_courses [] []
  • Mass Spectrometry-based Proteomics I: Protein Identification

    2 February 2018

    Lausanne

    Elixir node event
    Mass Spectrometry-based Proteomics I: Protein Identification https://tess.elixir-europe.org/events/mass-spectrometry-based-proteomics-i-protein-identification Overview This course is the first part of a 2-day course package. The second part, Mass-Spectrometry based Proteomics II: Quantification and Post-Translational Modifications, is more advanced and takes place one week later. 2018-02-02 09:00:00 UTC 2018-02-02 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Mass-Spectrometry based Proteomics II: Quantification and Post-Translational Modifications

    9 February 2018

    Lausanne

    Elixir node event
    Mass-Spectrometry based Proteomics II: Quantification and Post-Translational Modifications https://tess.elixir-europe.org/events/mass-spectrometry-based-proteomics-ii-quantification-and-post-translational-modifications Overview Following up on the course Mass Spectrometry-based Proteomics I: Protein Identification, the goal of this second part is to give more advanced theoretical and practical knowledge on the mass spectrometry (MS) techniques used in proteomics, 2018-02-09 09:00:00 UTC 2018-02-09 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    27 September 2018

    Lausanne

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-e8409a9b-e6d6-49cf-b389-351132a1e00a Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2018-09-27 09:00:00 UTC 2018-09-27 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    1 March 2018

    Lausanne

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-8d187726-4311-47b0-a66c-01b55e72469f Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2018-03-01 09:00:00 UTC 2018-03-01 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    24 May 2018

    Lausanne

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-28753e88-a414-4b38-a512-ed029f01f7f2 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2018-05-24 09:00:00 UTC 2018-05-24 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Chip-seq data analysis: from quality check to motif discovery and more - An introduction to the tools and databases of the EPD team

    9 - 13 April 2018

    Lausanne

    Elixir node event
    Chip-seq data analysis: from quality check to motif discovery and more - An introduction to the tools and databases of the EPD team https://tess.elixir-europe.org/events/chip-seq-data-analysis-from-quality-check-to-motif-discovery-and-more-an-introduction-to-the-tools-and-databases-of-the-epd-team-df3259bc-99f9-47f0-919f-3793c926cc99 Overview This is a course on bioinformatics resources taught by the developers of the resources. 2018-04-09 09:00:00 UTC 2018-04-13 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • NGS - Genome variant analysis

    6 - 7 February 2018

    Bern

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis Overview Among other genomic applications, Whole genome sequencing “WGS”, Whole Exome Sequencing “WES” and RNA sequencing are used for the detection of genomic variants. 2018-02-06 09:00:00 UTC 2018-02-07 00:00:00 UTC SIB, Bern SIB Bern [] training@sib.swiss [] workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    6 December 2018

    Lausanne

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-2385bfda-5a31-4b50-8e06-075a1a0614e2 Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2018-12-06 09:00:00 UTC 2018-12-06 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    14 February 2018

    Lausanne

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-ab75574d-f49f-4717-83fd-73a3421f2d37 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2018-02-14 09:00:00 UTC 2018-02-14 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Enrichment Analysis

    21 March 2018

    Lausanne

    Elixir node event
    Enrichment Analysis https://tess.elixir-europe.org/events/enrichment-analysis-7d10ba1e-4c96-49d6-a074-d4ed34b8a654 Overview Several statistical methods are available that determines whether a set of genes shows statistically significant differences between two classes (two biological states, two phenotype states, two experimental conditions etc.). 2018-03-21 09:00:00 UTC 2018-03-21 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Data Management Plan

    15 March 2018

    Lausanne

    Elixir node event
    Data Management Plan https://tess.elixir-europe.org/events/data-management-plan MORE INFORMATION TO COME 2018-03-15 09:00:00 UTC 2018-03-15 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    30 - 31 May 2018

    Bern

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2018-05-30 09:00:00 UTC 2018-05-31 00:00:00 UTC SIB, Bern SIB Bern [] training@sib.swiss [] workshops_and_courses [] []
  • R packaging

    17 April 2018

    Lausanne

    Elixir node event
    R packaging https://tess.elixir-europe.org/events/r-packaging Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usables packages in R. 2018-04-17 09:00:00 UTC 2018-04-17 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Enrichment Analysis

    21 March 2018

    Lausanne

    Elixir node event
    Enrichment Analysis https://tess.elixir-europe.org/events/enrichment-analysis Overview Several statistical methods are available that determines whether a set of genes shows statistically significant differences between two classes (two biological states, two phenotype states, two experimental conditions etc.). 2018-03-21 09:00:00 UTC 2018-03-21 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    13 November 2018

    Basel

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-baab21c6-5b82-44b8-91d6-563b873322ae Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2018-11-13 09:00:00 UTC 2018-11-13 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    14 February 2018

    Basel

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-9c1bba43-dc47-46fe-9cfe-f4b09461b0e5 Overview This full-day course (9am to 5pm) has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2018-02-14 09:00:00 UTC 2018-02-14 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] workshops_and_courses [] []
  • Statistical methods for big data in life sciences and health

    4 - 7 June 2018

    Lausanne

    Elixir node event
    Statistical methods for big data in life sciences and health https://tess.elixir-europe.org/events/statistical-methods-for-big-data-in-life-sciences-and-health MORE INFORMATION TO COME 2018-06-04 09:00:00 UTC 2018-06-07 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Transcriptomics Analysis: RNA-seq

    25 - 26 April 2018

    Lausanne

    Elixir node event
    Transcriptomics Analysis: RNA-seq https://tess.elixir-europe.org/events/transcriptomics-analysis-rna-seq-3088a64a-5666-49d7-9d19-deb876e0bc2a Overview This two-day course will discuss the following topics: The Structure of an RNAseq analysis pipeline: Raw data quality check RNAseq reads alignment Gene Expression level quantification by reads counting De novo Transcripts reconstruction 2018-04-25 09:00:00 UTC 2018-04-26 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    6 June 2018

    Basel

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-2b1ff111-035e-451e-9164-c7bad6762df4 Overview This full-day course (9-17h) has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2018-06-06 09:00:00 UTC 2018-06-06 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    9 October 2018

    Lausanne

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-4cd25543-c380-47d5-8187-90fa36ad34e4 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2018-10-09 09:00:00 UTC 2018-10-09 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    1 June 2018

    Lausanne

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-e515faf2-6e4a-4e7f-9b90-f7e643dd1089 Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2018-06-01 09:00:00 UTC 2018-06-01 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • First steps with R in Life Sciences

    19 - 20 April 2018

    Bern

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-9438ac46-684f-4653-bd28-f2c3525fd43f Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-04-19 09:00:00 UTC 2018-04-20 00:00:00 UTC SIB, Bern SIB Bern [] training@sib.swiss [] workshops_and_courses [] []
  • Intermediate stats: data analysis in practice

    15 - 16 February 2018

    Lausanne

    Elixir node event
    Intermediate stats: data analysis in practice https://tess.elixir-europe.org/events/intermediate-stats-data-analysis-in-practice Overview Do you feel unable to statistically analyse data, despite having already followed an introduction course on statistics ? If yes, this course was created for you. 2018-02-15 09:00:00 UTC 2018-02-16 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • ELIXIR-EXCELERATE Train the trainer

    30 - 31 January 2018

    Lausanne

    Elixir node event
    ELIXIR-EXCELERATE Train the trainer https://tess.elixir-europe.org/events/elixir-excelerate-train-the-trainer-7059aecf-f5be-4fdc-b962-db436d0ea6d5 2018-01-30 09:00:00 UTC 2018-01-31 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] workshops_and_courses [] []
  • Remake workshop: Make-like declarative workflows in R

    5 March 2018

    Zurich

    Elixir node event
    Remake workshop: Make-like declarative workflows in R https://tess.elixir-europe.org/events/remake-workshop-make-like-declarative-workflows-in-r Overview The R community has developed modern tools that allow implementing computational workflows from data acquisition to report generation entirely in R. 2018-03-05 09:00:00 UTC 2018-03-05 00:00:00 UTC SIB, Zurich SIB Zurich [] training@sib.swiss [] workshops_and_courses [] []
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