Swiss Institute of Bioinformatics

The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community.

Swiss Institute of Bioinformatics https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib.png?1469458452
Showing 14 materials.
BLAST and multiple sequence alignment (MSA) programs

Background The rapid identification of pathogens infecting livestock is essential to appropriately respond to the threat. The number and the variety of pathogen sequenced genomes have been growing more dramatically these recent years, because of the new sequencing technologies. This wealth of...

Keywords: Blast, E learning, Multiple sequence alignment

Resource type: e-learning

BLAST and multiple sequence alignment (MSA) programs https://tess.elixir-europe.org/materials/blast-and-multiple-sequence-alignment-msa-programs-0b2b34d0-a157-49d4-a065-3dcad67ff99d Background The rapid identification of pathogens infecting livestock is essential to appropriately respond to the threat. The number and the variety of pathogen sequenced genomes have been growing more dramatically these recent years, because of the new sequencing technologies. This wealth of new data is very useful to the research field through the development of bioinformatics tools and databases that deal with large amount of sequences. Among them, BLAST (Basic Local Alignment Search Tool) and MSA () programs are very efficient for protein or nucleotide sequence similarity search. The present course introduces the main biological databases, alignment tool BLAST and Multiple sequence alignments (MSA) programs, and interpretation of results. Goal The ultimate aim is the better management of animal diseases by preparing laboratory technicians, veterinarians and molecular epidemiologists from diagnostic and research laboratories of developing FAO and IAEA member states, to be self-sufficient in the data analysis by interpreting the phylogenetic trees and their relationships. Target audience Researchers, Laboratory technicians, veterinarians, epidemiologists from diagnostic and research laboratories of member states of IAEA and FAO. The concepts are explained in generalized way to help all academicians, researchers, students from all countries working in the field of molecular genetics and epidemiology. AuthorsViral-zone, Swiss-Prot group at the SIB Swiss Institute of Bioinformatics   Blast, E learning, Multiple sequence alignment Bench biologists Biologists Laboratory technicians Researchers Veterinarians 2014-04-28
BLAST and multiple sequence alignment (MSA) programs

Background The rapid identification of pathogens infecting livestock is essential to appropriately respond to the threat. The number and the variety of pathogen sequenced genomes have been growing more dramatically these recent years, because of the new sequencing technologies. This wealth of...

Keywords: Blast, E learning, Multiple sequence alignment

BLAST and multiple sequence alignment (MSA) programs https://tess.elixir-europe.org/materials/blast-and-multiple-sequence-alignment-msa-programs Background The rapid identification of pathogens infecting livestock is essential to appropriately respond to the threat. The number and the variety of pathogen sequenced genomes have been growing more dramatically these recent years, because of the new sequencing technologies. This wealth of new data is very useful to the research field through the development of bioinformatics tools and databases that deal with large amount of sequences. Among them, BLAST (Basic Local Alignment Search Tool) and MSA () programs are very efficient for protein or nucleotide sequence similarity search. The present course introduces the main biological databases, alignment tool BLAST and Multiple sequence alignments (MSA) programs, and interpretation of results. Goal The ultimate aim is the better management of animal diseases by preparing laboratory technicians, veterinarians and molecular epidemiologists from diagnostic and research laboratories of developing FAO and IAEA member states, to be self-sufficient in the data analysis by interpreting the phylogenetic trees and their relationships. Target audience Researchers, Laboratory technicians, veterinarians, epidemiologists from diagnostic and research laboratories of member states of IAEA and FAO. The concepts are explained in generalized way to help all academicians, researchers, students from all countries working in the field of molecular genetics and epidemiology. AuthorsViral-zone, Swiss-Prot group at the SIB Swiss Institute of Bioinformatics   Blast, E learning, Multiple sequence alignment Bench biologists Biologists Laboratory technicians Researchers Veterinarians 2014-04-28 2017-10-09
UNIX Fundamentals

This self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience. At the end of...

Keywords: Problem based learning, Programming, Unix

Resource type: e-learning

UNIX Fundamentals https://tess.elixir-europe.org/materials/unix-fundamentals-35adf82d-ae32-449d-9627-43b5d18da8cc This self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience. At the end of the course, participants are expected to be able to: Have some understanding on UNIX systems Navigate through the UNIX filesystem Execute and understand some UNIX process commands Correctly set file permissions Perform basic file management Participants are encouraged to follow the tutorial sections sequentially. The tutorial content is sometimes an oversimplification of the Truth - yes, we know! Due to the diversity of computer systems, we will just assume that participants do have access to a terminal. For help, please contact your IT support - or a good friend!Authors are affiliated to the SIB Swiss Institute of Bioinformatics: Vassilios IoannidisWith some content provided by Frédéric Schütz, Volker Flegel and Heinz StockingerContent integration by Grégoire Rossier and Vassilios Ioannidis Vassilios Ioannidis Grégoire Rossier Volker Flegel Heinz Stockinger Frédéric Schütz Problem based learning, Programming, Unix Bench biologists Clinical Scientists Graduate Students beginner bioinformaticians biocurators 2014-01-13 2017-10-09
High Performance Computing (HPC) in Life Sciences

High-throughput sequencing data analysis requires new technical competencies and HPC is one of them. SIB has developed an e-learning module in HPC, as part of the ELIXIR-EXCELERATE project. e-learning has the potential to reach a wider audience, in any location and any time, and can be used...

Scientific topics: Biology, Bioinformatics, Computer science

Keywords: High performance computing, high-performance computing

Resource type: Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences https://tess.elixir-europe.org/materials/high-performance-computing-hpc-in-life-sciences High-throughput sequencing data analysis requires new technical competencies and HPC is one of them. SIB has developed an e-learning module in HPC, as part of the ELIXIR-EXCELERATE project. e-learning has the potential to reach a wider audience, in any location and any time, and can be used either as the electronic component of a blended training format or as a self-running learning product. Biology Bioinformatics Computer science High performance computing, high-performance computing PhD students All postgraduates Life Science Researchers
Phylogenetics of animal viral pathogens

Background The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further...

Keywords: Animal pathogens, E learning, Phylogenetics

Resource type: e-learning

Phylogenetics of animal viral pathogens https://tess.elixir-europe.org/materials/phylogenetics-of-animal-viral-pathogens-428432a3-67ca-4284-8962-fefc2ade75db Background The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further useful in understanding their pathogenicity and molecular epidemiology. The usage of this data in developing efficient molecular diagnostic tools needs basic understanding of the phylogenetic analysis. Phylogenetic classification, construction of trees, interpretation unveils the geographical distribution and migration of pathogens which helps in better management of animal diseases. The present course is designed with introduction to phylogenetics, tools, building and interpreting trees and finally its application to veterinary diagnostics. Though the course is driven in veterinary aspects, the same implicates to the human and plant pathogen study. Goal The ultimate aim is the better management of animal diseases by preparing laboratory technicians, veterinarians and molecular epidemiologists from diagnostic and research laboratories of developing FAO and IAEA member states, to be self-sufficient in the data analysis by interpreting the phylogenetic trees and their relationships. Target audience Researchers, Laboratory technicians, veterinarians, epidemiologists from diagnostic and research laboratories of member states of IAEA and FAO. The concepts are explained in generalized way to help all academicians, researchers, students from all countries working in the field of molecular genetics and epidemiology. AuthorsViral-Zone, Swiss-Prot Group at SIB Swiss Institute of Bioinformatics   Animal pathogens, E learning, Phylogenetics Bench biologists Biologists Laboratory technicians Researchers Veterinarians 2014-04-28
Vital-IT Infrastructure Usage

How to efficiently use Vital-IT hardware and software infrastructure.

Vital-IT Infrastructure Usage https://tess.elixir-europe.org/materials/vital-it-infrastructure-usage How to efficiently use Vital-IT hardware and software infrastructure.
How to use V-pipe (SARS-CoV-2 data)

How to use V-pipe bioinformatics virus NGS Pipeline - (specifically for SARS-CoV-2 data)

Scientific topics: Workflows, Genetic variation, Virology

Keywords: coronavirus, NGS bioinformatics, Variant-calling

Resource type: Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data) https://tess.elixir-europe.org/materials/how-to-use-v-pipe-sars-cov-2-data How to use V-pipe bioinformatics virus NGS Pipeline - (specifically for SARS-CoV-2 data) Workflows Genetic variation Virology coronavirus, NGS bioinformatics, Variant-calling bioinformaticians Biologists, Genomicists, Computer Scientists
SPARQL



SPARQL https://tess.elixir-europe.org/materials/sparql 
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction...

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace https://tess.elixir-europe.org/materials/introduction-to-3d-structure-visualization-and-homology-modeling-using-the-swiss-model-workspace The goal of this course is to expose the participants to 3-dimensional structures of proteins. Analysis and visualization software (DeepView) will be used to display, analyze, compare and interpret protein structures. The second part of the course is dedicated to protein structure prediction using the Swiss-Model expert system for homology modeling.
High Performance Computing in Life Sciences

No description provided.

High Performance Computing in Life Sciences https://tess.elixir-europe.org/materials/high-performance-computing-in-life-sciences No description provided.
R basics

How to learn R basics

R basics https://tess.elixir-europe.org/materials/r-basics How to learn R basics
Cybersecurity Quiz for SIB employees only (internal use)

No description provided.

Cybersecurity Quiz for SIB employees only (internal use) https://tess.elixir-europe.org/materials/test-sib-security-quiz No description provided.
Phylogenetics of animal viral pathogens

Background The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further...

Keywords: Animal pathogens, E learning, Phylogenetics

Resource type: ViralZone

Phylogenetics of animal viral pathogens https://tess.elixir-europe.org/materials/phylogenetics-of-animal-viral-pathogens Background The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further useful in understanding their pathogenicity and molecular epidemiology. The usage of this data in developing efficient molecular diagnostic tools needs basic understanding of the phylogenetic analysis. Phylogenetic classification, construction of trees, interpretation unveils the geographical distribution and migration of pathogens which helps in better management of animal diseases. The present course is designed with introduction to phylogenetics, tools, building and interpreting trees and finally its application to veterinary diagnostics. Though the course is driven in veterinary aspects, the same implicates to the human and plant pathogen study. Goal The ultimate aim is the better management of animal diseases by preparing laboratory technicians, veterinarians and molecular epidemiologists from diagnostic and research laboratories of developing FAO and IAEA member states, to be self-sufficient in the data analysis by interpreting the phylogenetic trees and their relationships. Target audience Researchers, Laboratory technicians, veterinarians, epidemiologists from diagnostic and research laboratories of member states of IAEA and FAO. The concepts are explained in generalized way to help all academicians, researchers, students from all countries working in the field of molecular genetics and epidemiology. AuthorsViral-Zone, Swiss-Prot Group at SIB Swiss Institute of Bioinformatics   Animal pathogens, E learning, Phylogenetics Bench biologists Biologists Laboratory technicians Researchers Veterinarians 2014-04-28 2017-10-09
UNIX Fundamentals

This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.

UNIX Fundamentals https://tess.elixir-europe.org/materials/unix-fundamentals This tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge. The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience. 2014-01-13
Showing 24 upcoming events. Found 285 past events. View all results.
  • First Steps in Parallelization with OpenMP - streamed

    24 November 2021

    Streamed from Basel, Switzerland

    Elixir node event
    First Steps in Parallelization with OpenMP - streamed https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-45b442fd-4698-42c9-af20-13586a4e31ac Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. In order to benefit from this computational power, we need to devise programs explicitly written for parallel machines. 2021-11-24 09:00:00 UTC 2021-11-24 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Version Control with Git - streamed

    6 - 8 October 2021

    Streamed from Lausanne, Switzerland

    Elixir node event
    Version Control with Git - streamed https://tess.elixir-europe.org/events/version-control-with-git This course will be streamed only for the registered participants, who will receive specific information directly from the respective course’s organizers. 2021-10-06 09:00:00 UTC 2021-10-08 00:00:00 UTC SIB, Streamed from Lausanne, Switzerland SIB Streamed from Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Multivariate analysis for -omics data integration: principles and applications

    29 November - 2 December 2021

    Lyon, Switzerland

    Elixir node event
    Multivariate analysis for -omics data integration: principles and applications https://tess.elixir-europe.org/events/multivariate-analysis-for-omics-data-integration-principles-and-applications This course will take place in Lyon with rules complying to COVID situation (distances and hygiene), but in the event of restrictions preventing the event to take place in person, the participants will be informed about a probable streamed version. 2021-11-29 09:00:00 UTC 2021-12-02 00:00:00 UTC SIB, Lyon, Switzerland SIB Lyon Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to Machine Learning with Python - streamed

    4 - 5 October 2021

    Streamed from Basel, Switzerland

    Elixir node event
    Introduction to Machine Learning with Python - streamed https://tess.elixir-europe.org/events/introduction-to-machine-learning-with-python This course is now full with a waiting list but will be given again in 2022. 2021-10-04 09:00:00 UTC 2021-10-05 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Multivariate analysis for -omics data integration: principles and applications

    29 November - 2 December 2021

    Lyon, Switzerland

    Elixir node event
    Multivariate analysis for -omics data integration: principles and applications https://tess.elixir-europe.org/events/multivariate-analysis-for-omics-data-integration-principles-and-applications-1316ecac-0dfc-4839-b5e9-fcea597e96a3 This course will take place in Lyon with rules complying to COVID situation (COVID certificate, distances and hygiene). More details in the Additional Information section below. 2021-11-29 09:00:00 UTC 2021-12-02 00:00:00 UTC SIB, Lyon, Switzerland SIB Lyon Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences - streamed

    29 September - 1 October 2021

    Streamed from Basel and Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences - streamed https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-streamed-fad56994-b647-446e-b022-090a6af0090b We are sorry but this course is oversubscribed, with a long waiting list. Sign up here to be informed of the next course. 2021-09-29 09:00:00 UTC 2021-10-01 00:00:00 UTC SIB, Streamed from Basel and Lausanne, Switzerland SIB Streamed from Basel and Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker and Singularity for reproducible research: getting started with containers

    14 October 2021

    Bern or streamed, Switzerland

    Elixir node event
    Docker and Singularity for reproducible research: getting started with containers https://tess.elixir-europe.org/events/docker-and-singularity-for-reproducible-research-getting-started-with-containers-c19857f6-7765-4f0a-822a-8c6c38a1f095 Overview Reproducible analysis in bioinformatics goes beyond good documentation and sharing code. Often, analyses depend on an entire environment with many different programs, libraries and settings. 2021-10-14 09:00:00 UTC 2021-10-14 00:00:00 UTC SIB, Bern or streamed, Switzerland SIB Bern or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Research Data Management and Data Management Plan

    28 - 29 October 2021

    Lausanne, Switzerland

    Elixir node event
    Research Data Management and Data Management Plan https://tess.elixir-europe.org/events/research-data-managment-and-data-management-plan We are sorry but this course is oversubscribed, with a long waiting list. You are welcome to register to the SIB courses mailing list to be informed of all future courses, as well as all important deadlines using the form here. 2021-10-28 09:00:00 UTC 2021-10-29 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Statistics and Machine Learning for Life Sciences - streamed

    9 - 10 December 2021

    Streamed from Basel, Switzerland

    Elixir node event
    Statistics and Machine Learning for Life Sciences - streamed https://tess.elixir-europe.org/events/statistics-and-machine-learning-for-life-sciences-6cd03f39-e452-420b-afb2-8212be992b1a Overview Statistics are an integral aspect of scientific research, and in particular of life sciences that heavily rely on quantitative methodologies. 2021-12-09 09:00:00 UTC 2021-12-10 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Deep Learning for Life Sciences - fundamentals and applications

    25 November 2021

    Streamed, Switzerland

    Elixir node event
    Deep Learning for Life Sciences - fundamentals and applications https://tess.elixir-europe.org/events/deep-learning-for-life-sciences-fundamentals-and-applications Overview The aim of this course is to familiarise the participants with the deep learning model and some of its applications in life sciences. 2021-11-25 09:00:00 UTC 2021-11-25 00:00:00 UTC SIB, Streamed, Switzerland SIB Streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps in Parallelization with OpenMP

    24 November 2021

    Basel, Switzerland

    Elixir node event
    First Steps in Parallelization with OpenMP https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-ad9c6e36-8ddc-47b8-98e7-33547b450196 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. 2021-11-24 09:00:00 UTC 2021-11-24 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Ligand-protein docking, and computer-aided drug design

    13 - 15 December 2021

    Basel, Switzerland

    Elixir node event
    Ligand-protein docking, and computer-aided drug design https://tess.elixir-europe.org/events/ligand-protein-docking-and-computer-aided-drug-design-streamed Overview This workshop aims to present basics on molecular visualization, ligand-protein docking and several computer-aided drug design tools developed at SIB. Numerous case examples are taken from different therapeutic fields. 2021-12-13 09:00:00 UTC 2021-12-15 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    10 November 2021

    Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-258314f5-c22d-4dcf-97e4-9efff8baa9aa This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-11-10 09:00:00 UTC 2021-11-10 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    8 December 2021

    Streamed from Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-1113385d-e02b-4d19-a4bf-c94f67c30812 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-12-08 09:00:00 UTC 2021-12-08 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    28 September 2021

    Streamed from Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-08f393f3-a813-4e56-a574-7e419ca77f34 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2021-09-28 09:00:00 UTC 2021-09-28 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced Technical Presentation 1: Core Techniques

    18 October 2021

    Blended - Streamed and videos, Switzerland

    Elixir node event
    Advanced Technical Presentation 1: Core Techniques https://tess.elixir-europe.org/events/advanced-technical-presentation-1-core-techniques-b80c1e94-54f9-4e04-91cd-b5d1277a2870 Overview Presenting technical information to an audience is one of the hardest tasks any scientist can face. Presenting effectively is not a natural talent for most people. 2021-10-18 09:00:00 UTC 2021-10-18 00:00:00 UTC SIB, Blended - Streamed and videos, Switzerland SIB Blended - Streamed and videos Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Enrichment Analysis

    3 December 2021

    Lausanne or Streamed, Switzerland

    Elixir node event
    Enrichment Analysis https://tess.elixir-europe.org/events/enrichment-analysis-d41a6c02-b748-45e0-913a-b349661ead77 Overview Experiments designed to quantify gene expression often yield hundreds of genes that show statistically significant differences between two classes (two biological states, two phenotype states, two experimental conditions, etc). 2021-12-03 09:00:00 UTC 2021-12-03 00:00:00 UTC SIB, Lausanne or Streamed, Switzerland SIB Lausanne or Streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    3 - 5 November 2021

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-bc83a158-63bc-43f4-9c62-a8a9b4bd1545 Please be aware that to comply with recent federal and cantonal recommendations, you will most probably have the obligation to present a COVID certificate to be able to attend the course. Take this into consideration before applying to this course. 2021-11-03 09:00:00 UTC 2021-11-05 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • UNIX scripting for Life Scientists

    8 - 9 November 2021

    Lausanne or streamed, Switzerland

    Elixir node event
    UNIX scripting for Life Scientists https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists-ce31f453-1655-4860-ab78-672cc3d7dcf4 Overview Scripting allows shell users to automate repetitive tasks, thus improving reproducibility, reducing the risk of errors, freeing time, and avoiding boredom. 2021-11-08 09:00:00 UTC 2021-11-09 00:00:00 UTC SIB, Lausanne or streamed, Switzerland SIB Lausanne or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single-cell Transcriptomics - streamed

    8 - 10 November 2021

    Bern or streamed, Switzerland

    Elixir node event
    Single-cell Transcriptomics - streamed https://tess.elixir-europe.org/events/single-cell-transcriptomics-streamed-2d5e78ee-bc2b-4093-b3d7-57ccb1835353 Overview In contrast to the Bulk RNA sequencing used to quantify the abundance of gene and transcript expression at a whole population level, single-cell RNA sequencing (scRNAseq) allows researchers to study gene expression profile at a single cell 2021-11-08 09:00:00 UTC 2021-11-10 00:00:00 UTC SIB, Bern or streamed, Switzerland SIB Bern or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker and Singularity for reproducible research: getting started with containers - streamed

    14 October 2021

    Streamed from Bern, Switzerland

    Elixir node event
    Docker and Singularity for reproducible research: getting started with containers - streamed https://tess.elixir-europe.org/events/docker-and-singularity-for-reproducible-research-getting-started-with-containers-streamed This course is now full with a long waiting list. 2021-10-14 09:00:00 UTC 2021-10-14 00:00:00 UTC SIB, Streamed from Bern, Switzerland SIB Streamed from Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Mining enzyme data in UniProtKB using Rhea - streamed

    22 October 2021

    Streamed from Grenoble and Geneva, Switzerland

    Elixir node event
    Mining enzyme data in UniProtKB using Rhea - streamed https://tess.elixir-europe.org/events/mining-enzyme-data-in-uniprotkb-using-rhea-streamed This course will be streamed only for registered participants. Registered participants will receive information from the course organizer in due time. 2021-10-22 09:00:00 UTC 2021-10-22 00:00:00 UTC SIB, Streamed from Grenoble and Geneva, Switzerland SIB Streamed from Grenoble and Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Reproducible research and data analysis using Nextflow pipelines

    15 - 18 November 2021

    Streamed from Lausanne and Barcelona, Switzerland

    Elixir node event
    Reproducible research and data analysis using Nextflow pipelines https://tess.elixir-europe.org/events/reproducible-research-and-data-analysis-using-nextflow-pipelines Overview Nextflow is a powerful polyglot workflow language that, provides a robust, scalable and reproducible way to run computational pipelines. 2021-11-15 09:00:00 UTC 2021-11-18 00:00:00 UTC SIB, Streamed from Lausanne and Barcelona, Switzerland SIB Streamed from Lausanne and Barcelona Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Mining enzyme data in UniProtKB using Rhea - streamed

    22 October 2021

    Streamed from Grenoble and Geneva, Switzerland

    Elixir node event
    Mining enzyme data in UniProtKB using Rhea - streamed https://tess.elixir-europe.org/events/mining-enzyme-data-in-uniprotkb-using-rhea-streamed-370e6f56-32fb-4f0e-9fa3-f973225a7879 This course will be streamed only for registered participants. Registered participants will receive information from the course organizer in due time. 2021-10-22 09:00:00 UTC 2021-10-22 00:00:00 UTC SIB, Streamed from Grenoble and Geneva, Switzerland SIB Streamed from Grenoble and Geneva Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []