How to use V-pipe (SARS-CoV-2 data)
This tutorial demonstrate how to use V-pipe - Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations.
For the purpose of this toturial, we use the sars-cov2 branch of V-pipe and analyse SARS-CoV-2 runs downloaded from NCBI SRA.
Scientific topics: Workflows, Genetic variation, Virology
Operations: Read pre-processing, Alignment, Variant calling
Keywords: coronavirus, NGS bioinformatics, Variant-calling
Resource type: Computer Software, workflow
Target audience: bioinformaticians, Biologists, Genomicists, Computer Scientists
Difficulty level: Beginner
Licence: Creative Commons Attribution Share-Alike 4.0