ISMARA: A tool to infer genome-wide regulatory interactions

This 1-hour e-learning course introduces the ISMARA tool to infer genome-wide regulatory interactions from microarray, RNA-seq and ChIP-seq data.

Licence: Creative Commons Attribution 4.0 International

Keywords: Computational modelling, Gene regulation

Target audience: Life scientists with no or little knowledge of the ISMARA tool.

Resource type: e-learning

Status: Active


Basic knowledge of genome-wide expression or ChIP-seq data is required.

Learning objectives:

  • Describe what the ISMARA tool does
  • Define the scope and format of the data for ISMARA
  • Interpret the results obtained using ISMARA
  • Provide examples of what ISMARA can be used for

Authors: Monique Zahn

Contributors: Erik van Nimwegen, Mikhail Pachkov

Scientific topics: Systems biology, Gene regulation, Transcription factors and regulatory sites

External resources:

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