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Q&A about upcoming release

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Q&A about upcoming release https://tess.elixir-europe.org/materials/q-a-about-upcoming-release Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Presentation on AnVIL

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Presentation on AnVIL https://tess.elixir-europe.org/materials/presentation-on-anvil Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
New builder update

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

New builder update https://tess.elixir-europe.org/materials/new-builder-update Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Compiling the OSCA book on the Bioconductor build system

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Compiling the OSCA book on the Bioconductor build system https://tess.elixir-europe.org/materials/compiling-the-osca-book-on-the-bioconductor-build-system Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Browsing and searching the Bioconductor codebase

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Browsing and searching the Bioconductor codebase https://tess.elixir-europe.org/materials/browsing-and-searching-the-bioconductor-codebase Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Introduction

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Introduction https://tess.elixir-europe.org/materials/introduction-e309609e-264f-4023-9485-f406549bb597 Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Outreach

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Outreach https://tess.elixir-europe.org/materials/outreach Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Challenges and opportunities

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Challenges and opportunities https://tess.elixir-europe.org/materials/challenges-and-opportunities Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Continuous integration with Github Actions

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Continuous integration with Github Actions https://tess.elixir-europe.org/materials/continuous-integration-with-github-actions Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Plant Bioinformatics Capstone

The past 15 years have been exciting ones in plant biology. Hundreds of plant genomes have been sequenced, RNA-seq has enabled transcriptome-wide expression profiling, and a proliferation of "-seq"-based methods has permitted protein-protein and protein-DNA interactions to be determined cheaply...

Keywords: physical-science-and-engineering, life-sciences, research-methods, basic-science

Plant Bioinformatics Capstone https://tess.elixir-europe.org/materials/plant-bioinformatics-capstone The past 15 years have been exciting ones in plant biology. Hundreds of plant genomes have been sequenced, RNA-seq has enabled transcriptome-wide expression profiling, and a proliferation of "-seq"-based methods has permitted protein-protein and protein-DNA interactions to be determined cheaply and in a high-throughput manner. These data sets in turn allow us to generate hypotheses at the click of a mouse or tap of a finger. In Plant Bioinformatics on Coursera.org, we covered 33 plant-specific online tools from genome browsers to transcriptomic data mining to promoter/network analyses and others, and in this Plant Bioinformatics Capstone we'll use these tools to hypothesize a biological role for a gene of unknown function, summarized in a written lab report. This course is part of a Plant Bioinformatics Specialization on Coursera, which introduces core bioinformatic competencies and resources, such as NCBI's Genbank, Blast, multiple sequence alignments, phylogenetics in Bioinformatic Methods I, followed by protein-protein interactions, structural bioinformatics and RNA-seq analysis in Bioinformatic Methods II, in addition to the plant-specific concepts and tools introduced in Plant Bioinformatics and the Plant Bioinformatics Capstone. This course/capstone was developed with funding from the University of Toronto's Faculty of Arts and Science Open Course Initiative Fund (OCIF) and was implemented by Eddi Esteban, Will Heikoop and Nicholas Provart. Asher Pasha programmed a gene ID randomizer. physical-science-and-engineering, life-sciences, research-methods, basic-science
Eurordis Open Academy

The EURORDIS Open Academy currently encompasses the Winter School on Scientific Innovation and Translational Research, the Summer School on Medicines Research and Development, the Leadership School and the Digital School

Keywords: Rare Diseases & Research

Resource type: course materials

Eurordis Open Academy https://tess.elixir-europe.org/materials/eurordis-online-trainning-modules The EURORDIS Open Academy currently encompasses the Winter School on Scientific Innovation and Translational Research, the Summer School on Medicines Research and Development, the Leadership School and the Digital School Rare Diseases & Research Patient Advocates Life Science Researchers Biomedical researchers
galaxy.sciensano.be

This training is meant specifically for the “Galaxy @Sciensano” that is available at https://galaxy.sciensano.be/ and serves two purposes. First, it serves as an introduction in how to handle and employ the Galaxy instance hosted by Sciensano. Secondly, is also serves as a tutorial into both the...

Scientific topics: Microbiology, Sequencing, Genomics, Public health and epidemiology, Bioinformatics

Resource type: Video, Tutorial

galaxy.sciensano.be https://tess.elixir-europe.org/materials/galaxy-sciensano-training This training is meant specifically for the “Galaxy @Sciensano” that is available at https://galaxy.sciensano.be/ and serves two purposes. First, it serves as an introduction in how to handle and employ the Galaxy instance hosted by Sciensano. Secondly, is also serves as a tutorial into both the basics of next-generation sequencing data analysis, but also more specialized topics of interest in public health (e.g. AMR detection, cgMLST analysis etc., SNP-based outbreak analysis etc.). The training consists specifically out of a series of training videos that are publicly available on YouTube. Microbiology Sequencing Genomics Public health and epidemiology Bioinformatics Microbiologists Public Health Professionals Life Science Researchers
Educational webinars on rare endocrine conditions (ENDO-ERN)

Various webinar on rare endocrine conditions

Keywords: Rare Diseases & Research

Resource type: Webinar

Educational webinars on rare endocrine conditions (ENDO-ERN) https://tess.elixir-europe.org/materials/endo-ern-educational-webinars Various webinar on rare endocrine conditions Rare Diseases & Research Clinical Scientists Biomedical researchers healthcare professionals
Educational webinars on rare and complex epilepsies (EpiCARE ERN)

Free online seminars on Thursdays related to rare epilepsies

Keywords: Rare Diseases & Research

Resource type: Webinar

Educational webinars on rare and complex epilepsies (EpiCARE ERN) https://tess.elixir-europe.org/materials/epicare-ern-educational-webinars Free online seminars on Thursdays related to rare epilepsies Rare Diseases & Research Health Care Professionals health professionals Biomedical researchers
Postgraduate Curriculum in Rare Kidney Diseases developed by ERKNet

ERKNet Postgraduate Curriculum in Rare Kidney Diseases / ESPN – IPNA Curriculum in Pediatric Nephrology

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar

Postgraduate Curriculum in Rare Kidney Diseases developed by ERKNet https://tess.elixir-europe.org/materials/erknet-education-and-training ERKNet Postgraduate Curriculum in Rare Kidney Diseases / ESPN – IPNA Curriculum in Pediatric Nephrology Rare diseases Rare Diseases & Research
Webinars from the European Reference Network in Rare Hematological Diseases (EuroBloodNet)

The aim of these educational activities is to promote the interest on very innovative topics in order to stress among health professionals the cutting-edge advances in the field of Rare Hematological Diseases. One or 2 webinars per month, each of them lasting 45 minutes.

Keywords: Rare Diseases & Research

Resource type: Webinar

Webinars from the European Reference Network in Rare Hematological Diseases (EuroBloodNet) https://tess.elixir-europe.org/materials/ern-eurobloodnet-thursdays-webinars The aim of these educational activities is to promote the interest on very innovative topics in order to stress among health professionals the cutting-edge advances in the field of Rare Hematological Diseases. One or 2 webinars per month, each of them lasting 45 minutes. Rare Diseases & Research Health Care Professionals health professionals Patient Advocates rare disease patients representatives
Rare and complex urogenital diseases and condition webinars (eUROGEN ERN)

Monthly webinar programme on rare congenital uro-recto-genital anomalies.

Keywords: Rare Diseases & Research

Resource type: Webinar

Rare and complex urogenital diseases and condition webinars (eUROGEN ERN) https://tess.elixir-europe.org/materials/eurogen-education-and-training-webinars Monthly webinar programme on rare congenital uro-recto-genital anomalies. Rare Diseases & Research healthcare professionals health professionals
Education and Training webinars on genetic tumor risk syndromes (ERN GENTURIS)

Target audience for the webinars are clinicians, genetic counsellors, clinical scientists and other genetics health professionals. The presentation itself lasts approximately 20-30 minutes, and viewers have the opportunity to send questions on the subject area which will be addressed in a...

Keywords: Rare Diseases & Research

Resource type: Webinar

Education and Training webinars on genetic tumor risk syndromes (ERN GENTURIS) https://tess.elixir-europe.org/materials/genturis-education-and-training-webinars Target audience for the webinars are clinicians, genetic counsellors, clinical scientists and other genetics health professionals. The presentation itself lasts approximately 20-30 minutes, and viewers have the opportunity to send questions on the subject area which will be addressed in a question & answer session afterwards. Rare Diseases & Research Clinicians Clinical Scientists health professionals geneticists
Educational videos on rare and low prevalence complex diseases of the heart (ERN GUARD-Heart)

Educational videos for experts

Keywords: Rare Diseases & Research

Resource type: Video

Educational videos on rare and low prevalence complex diseases of the heart (ERN GUARD-Heart) https://tess.elixir-europe.org/materials/ern-guard-heart-educational-videos Educational videos for experts Rare Diseases & Research health professionals Health Care Professionals
Webinars on Hereditary metabolic diseases (MetabERN)

To share information and documentation with stakeholders involved in the field of hereditary metabolic disorders.

Keywords: Rare Diseases & Research

Resource type: Webinar

Webinars on Hereditary metabolic diseases (MetabERN) https://tess.elixir-europe.org/materials/metabern-library-teaching-and-training-programmes To share information and documentation with stakeholders involved in the field of hereditary metabolic disorders. Rare Diseases & Research Health Care Professionals health professionals
Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET)

ERN ReCONNET proposes free online training and education.

Keywords: Rare Diseases & Research

Resource type: Webinar, Video

Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET) https://tess.elixir-europe.org/materials/ern-reconnet-educational-webinars ERN ReCONNET proposes free online training and education. Rare Diseases & Research Health Care Professionals health professionals
Webinars and Pills of knowledge Videos on rare vascular diseases (VASCERN)

Short single video lessons (of approximately 3-5 minutes long) and webinars.

Keywords: Rare Diseases & Research

Webinars and Pills of knowledge Videos on rare vascular diseases (VASCERN) https://tess.elixir-europe.org/materials/vascern-webinars-and-pills-of-knowledge-videos Short single video lessons (of approximately 3-5 minutes long) and webinars. Rare Diseases & Research medical students Health Care Professionals health professionals
The Genomics Era: the Future of Genetics in Medicine

This free online course is available on FutureLearn and developed by the St George's University of London and St George's University Hospitals NHS Foundation Trust. It provides healthcare professionals with a basic grounding in genomic medicine. It will introduce you to new genomic technologies,...

Keywords: Rare Diseases & Research

Resource type: e-learning

The Genomics Era: the Future of Genetics in Medicine https://tess.elixir-europe.org/materials/the-genomics-era-the-future-of-genetics-in-medicine This free online course is available on FutureLearn and developed by the St George's University of London and St George's University Hospitals NHS Foundation Trust. It provides healthcare professionals with a basic grounding in genomic medicine. It will introduce you to new genomic technologies, which are revolutionizing medicine and will, in time, provide the mainstay of patient diagnosis, treatment and disease prevention. Rare Diseases & Research healthcare professionals
Whole Genome Sequencing: Decoding the Language of Life and Health

This course is available on FutureLearn and developed by Health Education England (NHS). The course has been designed for healthcare professionals and science/medical students who have limited or no understanding of the who genome sequencing process and its many varied uses. Non-specialists who...

Keywords: Rare Diseases & Research

Resource type: e-learning

Whole Genome Sequencing: Decoding the Language of Life and Health https://tess.elixir-europe.org/materials/whole-genome-sequencing-decoding-the-language-of-life-and-health This course is available on FutureLearn and developed by Health Education England (NHS). The course has been designed for healthcare professionals and science/medical students who have limited or no understanding of the who genome sequencing process and its many varied uses. Non-specialists who want to learn more about sequencing and genomic medicine are also very welcome. Rare Diseases & Research Health Care Professionals health professionals medical students science students
Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing

This course is available on FutureLearn and developed by St George's University of London. This postgraduate-level course will help you understand these new and established genetic technologies, and their application to clinical practice.

Keywords: Rare Diseases & Research

Resource type: e-learning

Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing https://tess.elixir-europe.org/materials/genomic-technologies-in-clinical-diagnostics-next-generation-sequencing This course is available on FutureLearn and developed by St George's University of London. This postgraduate-level course will help you understand these new and established genetic technologies, and their application to clinical practice. Rare Diseases & Research postgrad Scientists Healthcare
Genomic Technologies in Clinical Diagnostics: Molecular Techniques

This course is available on FutureLearn and developed by St George’s, University of London. This postgraduate-level course, in combination with Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing Technologies, will help you understand these new and established genetic...

Keywords: Rare Diseases & Research

Resource type: e-learning

Genomic Technologies in Clinical Diagnostics: Molecular Techniques https://tess.elixir-europe.org/materials/genomic-technologies-in-clinical-diagnostics-molecular-techniques This course is available on FutureLearn and developed by St George’s, University of London. This postgraduate-level course, in combination with Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing Technologies, will help you understand these new and established genetic technologies, and their application to clinical practice. This course focuses on molecular techniques. Rare Diseases & Research Scientists healthcare professionals
Genetics education for primary care resources from the Gen-Equip project

Gen-Equip project is a project combining education, primary care and genetics. Its aim is to enable health professionals who are working in primary care to update their knowledge and skills in genetics. The aims is the long-term outcome of improvement in care of patients with genetic conditions...

Keywords: Rare Diseases & Research

Resource type: Documentation, Video, Training materials, online modules

Genetics education for primary care resources from the Gen-Equip project https://tess.elixir-europe.org/materials/genetics-education-for-primary-care-resources Gen-Equip project is a project combining education, primary care and genetics. Its aim is to enable health professionals who are working in primary care to update their knowledge and skills in genetics. The aims is the long-term outcome of improvement in care of patients with genetic conditions or concerns. They offer genetics education free of charge to those who want continuing medical or professional education in genetics. Rare Diseases & Research Primary care doctors health professionals
EATRIS Transmed Academy - course on translational medicine

e-learning platform which hosts online courses as well as recordings of webinar series.

Keywords: Rare Diseases & Research

Resource type: e-learning, Webinar

EATRIS Transmed Academy - course on translational medicine https://tess.elixir-europe.org/materials/eatris-transmed-academy e-learning platform which hosts online courses as well as recordings of webinar series. Rare Diseases & Research PhD Students healthcare professionals postdocs
European Patients’ Academy Webinars

12 webinars from EUPATI, for patients and advocates

Keywords: Rare Diseases & Research

Resource type: Webinar

European Patients’ Academy Webinars https://tess.elixir-europe.org/materials/european-patients-academy-webinars 12 webinars from EUPATI, for patients and advocates Rare Diseases & Research rare disease patients representatives Patient Advocates
European Patients’ Academy Expert Training Course

Online course in medicines research and development. Not solely focused on rare diseases.

Keywords: Rare Diseases & Research

Resource type: online modules, e-learning, Training materials

European Patients’ Academy Expert Training Course https://tess.elixir-europe.org/materials/european-patients-academy-expert-training-course Online course in medicines research and development. Not solely focused on rare diseases. Rare Diseases & Research Patient Advocates rare disease patients representatives