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17 materials found

Keywords: Ontologies 


Making cohort data FAIR

CINECA webinar about how to make data from cohort studies FAIR

Scientific topics: Data management, Data integration and warehousing

Keywords: FAIR data, Cohort data, Ontologies, Standards

Resource type: Video

Making cohort data FAIR https://tess.elixir-europe.org/materials/making-cohort-data-fair CINECA webinar about how to make data from cohort studies FAIR Data management Data integration and warehousing FAIR data, Cohort data, Ontologies, Standards
Annotating data using next generation biobanking ontology (NGBO)

This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO).

Scientific topics: Ontology and terminology, Data integration and warehousing

Keywords: Standards, Ontologies, Data Integration, data harmonization, Standardised vocabulary

Resource type: Video

Annotating data using next generation biobanking ontology (NGBO) https://tess.elixir-europe.org/materials/annotating-data-using-next-generation-biobanking-ontology-ngbo This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO). Ontology and terminology Data integration and warehousing Standards, Ontologies, Data Integration, data harmonization, Standardised vocabulary
Applying data standards to the harmonization of COVID-19 datasets from different sources

This video describes how public health genomics has played a key role in international responses to the COVID-19 pandemic, and how data standards are being used to harmonize data across jurisdictions for Canadian COVID-19 surveillance and outbreak investigations.

Scientific topics: Data integration and warehousing

Keywords: Data integration, Standards, Standardised vocabulary, data harmonization, Ontologies

Resource type: Video

Applying data standards to the harmonization of COVID-19 datasets from different sources https://tess.elixir-europe.org/materials/applying-data-standards-to-the-harmonization-of-covid-19-datasets-from-different-sources This video describes how public health genomics has played a key role in international responses to the COVID-19 pandemic, and how data standards are being used to harmonize data across jurisdictions for Canadian COVID-19 surveillance and outbreak investigations. Data integration and warehousing Data integration, Standards, Standardised vocabulary, data harmonization, Ontologies Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).
Useful ontologies for harmonizing cohort data

This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data.

Scientific topics: Ontology and terminology, Data management, Data integration and warehousing

Keywords: Ontologies, Cohort data, data annotation

Resource type: Video

Useful ontologies for harmonizing cohort data https://tess.elixir-europe.org/materials/useful-ontologies-for-harmonizing-cohort-data This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data. Ontology and terminology Data management Data integration and warehousing Ontologies, Cohort data, data annotation Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).
Annotating data using ontologies

This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems.

Scientific topics: Ontology and terminology, Data integration and warehousing, Data management

Keywords: Ontologies, Annotation, Data integration

Resource type: Video

Annotating data using ontologies https://tess.elixir-europe.org/materials/annotating-data-using-ontologies This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems. Ontology and terminology Data integration and warehousing Data management Ontologies, Annotation, Data integration
Solutions for overcoming cohort data integration challenges using ontology: an introduction

Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups.

Scientific topics: Data management, Data integration and warehousing, Ontology and terminology

Keywords: Ontologies, Data integration, Annotation

Resource type: Video

Solutions for overcoming cohort data integration challenges using ontology: an introduction https://tess.elixir-europe.org/materials/solutions-for-overcoming-cohort-data-integration-challenges-using-ontology-an-introduction Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups. Data management Data integration and warehousing Ontology and terminology Ontologies, Data integration, Annotation
Data harmonization and enrichment using EMBL-EBI ontology tools

This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data. The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators...

Scientific topics: Ontology and terminology, Data submission, annotation, and curation, Data management

Keywords: CINECA, data harmonization, Annotation, Ontologies

Resource type: Video

Data harmonization and enrichment using EMBL-EBI ontology tools https://tess.elixir-europe.org/materials/data-harmonization-and-enrichment-using-embl-ebi-ontology-tools This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data. The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators access the tools through their respective websites. REST APIs are available for software developers who want to build systems based on these services. Ontology and terminology Data submission, annotation, and curation Data management CINECA, data harmonization, Annotation, Ontologies biocurators software developers, bioinformaticians
Giving data context, structure and meaning

Metadata, standards and ontologies are common ways of providing data with context, structure and meaning. In this webinar Sira explores the idea of once data are ontologised (mapped to standard structured vocabulary), they become linkable to build a bigger infrastructure of knowledge network and...

Keywords: metadata, Ontologies

Giving data context, structure and meaning https://tess.elixir-europe.org/materials/giving-data-context-structure-and-meaning Metadata, standards and ontologies are common ways of providing data with context, structure and meaning. In this webinar Sira explores the idea of once data are ontologised (mapped to standard structured vocabulary), they become linkable to build a bigger infrastructure of knowledge network and provides a few scientific examples of how knowledge are drawn from linked data. She also provides a brief overview of tools that can be used to give data context, structure and meaning at different stages of the data lifecycle. metadata, Ontologies
EMBL-EBI Train Online

If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently.

Scientific topics: Bioinformatics

Keywords: Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems

EMBL-EBI Train Online https://tess.elixir-europe.org/materials/embl-ebi-train-online If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently. Bioinformatics Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems Beginner informatics Life sciences 2018-05-11
IMPC: Using the mouse phenotyping portal

IMPC: Using the mouse phenotyping portal from http://www.ebi.ac.uk/training/online/course/impc-using-mouse-phenotyping-portal.

Keywords: Systems, Ontologies

IMPC: Using the mouse phenotyping portal https://tess.elixir-europe.org/materials/impc-using-the-mouse-phenotyping-portal IMPC: Using the mouse phenotyping portal from http://www.ebi.ac.uk/training/online/course/impc-using-mouse-phenotyping-portal. Systems, Ontologies 2016-06-14
GO: Quick tour

GO: Quick tour from http://www.ebi.ac.uk/training/online/course/go-quick-tour.

Keywords: Ontologies

GO: Quick tour https://tess.elixir-europe.org/materials/go-quick-tour GO: Quick tour from http://www.ebi.ac.uk/training/online/course/go-quick-tour. Ontologies 2016-06-14
diXa data warehouse: Exploring data from toxicogenomics studies

diXa data warehouse: Exploring data from toxicogenomics studies from http://www.ebi.ac.uk/training/online/course/dixa-data-warehouse-exploring-data-toxicogenomics.

Keywords: Gene Expression, Ontologies, Chemical biology

diXa data warehouse: Exploring data from toxicogenomics studies https://tess.elixir-europe.org/materials/dixa-data-warehouse-exploring-data-from-toxicogenomics-studies diXa data warehouse: Exploring data from toxicogenomics studies from http://www.ebi.ac.uk/training/online/course/dixa-data-warehouse-exploring-data-toxicogenomics. Gene Expression, Ontologies, Chemical biology 2016-06-14
Complex Portal: webinar

Complex Portal: webinar from http://www.ebi.ac.uk/training/online/course/complex-portal-webinar.

Keywords: Systems, Ontologies, Proteins, Structures

Complex Portal: webinar https://tess.elixir-europe.org/materials/complex-portal-webinar Complex Portal: webinar from http://www.ebi.ac.uk/training/online/course/complex-portal-webinar. Systems, Ontologies, Proteins, Structures 2016-06-14
Complex Portal: Quick tour

Complex Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/complex-portal-quick-tour.

Keywords: Systems, Ontologies, Proteins, Structures

Complex Portal: Quick tour https://tess.elixir-europe.org/materials/complex-portal-quick-tour Complex Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/complex-portal-quick-tour. Systems, Ontologies, Proteins, Structures 2016-06-14
Cellular Microscopy Phenotype Ontology (CMPO): Quick tour

Cellular Microscopy Phenotype Ontology (CMPO): Quick tour from http://www.ebi.ac.uk/training/online/course/cellular-microscopy-phenotype-ontology-cmpo-quick.

Keywords: Ontologies, Cross domain

Cellular Microscopy Phenotype Ontology (CMPO): Quick tour https://tess.elixir-europe.org/materials/cellular-microscopy-phenotype-ontology-cmpo-quick-tour Cellular Microscopy Phenotype Ontology (CMPO): Quick tour from http://www.ebi.ac.uk/training/online/course/cellular-microscopy-phenotype-ontology-cmpo-quick. Ontologies, Cross domain 2016-06-14
BioSamples: Quick tour

BioSamples: Quick tour from http://www.ebi.ac.uk/training/online/course/biosamples-quick-tour.

Keywords: DNA RNA, Gene Expression, Ontologies, Proteins

BioSamples: Quick tour https://tess.elixir-europe.org/materials/biosamples-quick-tour BioSamples: Quick tour from http://www.ebi.ac.uk/training/online/course/biosamples-quick-tour. DNA RNA, Gene Expression, Ontologies, Proteins 2016-06-14
BioSamples Database RDF: webinar

BioSamples Database RDF: webinar from http://www.ebi.ac.uk/training/online/course/biosamples-database-rdf-webinar.

Keywords: DNA RNA, Gene Expression, Ontologies, Proteins

BioSamples Database RDF: webinar https://tess.elixir-europe.org/materials/biosamples-database-rdf-webinar BioSamples Database RDF: webinar from http://www.ebi.ac.uk/training/online/course/biosamples-database-rdf-webinar. DNA RNA, Gene Expression, Ontologies, Proteins 2016-06-14