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56 materials found

Content provider: IFB French Institute of Bio... 


bio-tools - EDAM drop-in hackathon - discussions

bio.tools, EDAM drop-in hackathon and discussions

Data clearinghouse, validation and curation of BioSamples - ENA - Breeding API endpoints - MAR databases

 

Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases
 

Prototyping the new PSICQUIC 2-0

 

Prototyping the new PSICQUIC 2.0
 

FAIR data - Module 4 (share and publish data)

Partager et diffuser les données. Le cadre juridique, les entrepôts et les licences sur les données

Scientific topics: Bioinformatics, Biology, Data management

Keywords: data sharing, Data publishing, legal framework, data warehouse, licensing, data reuse

Resource type: Slides

FAIR data - Module 3 (Metadata)

Les Métadonnées : les standards du domaine des données omiques en biologie et séances pratiques d’annotations de jeux de données

Scientific topics: Bioinformatics, Biology, Data management

Operations: Data handling

Keywords: metadata, data annotation, life science standards, data sharing

Resource type: Slides

FAIR data - Module 2 (data life cycle)

La vie des données pendant le projet : Principe et outils pour organiser, nommer, versionner, stocker, archiver, mes données

Scientific topics: Data management, Biology, Bioinformatics

Operations: Data handling

Keywords: Data preserving, Data storage

Resource type: Slides

FAIR data - Module 1 (research data)

Research data and their centrality in the research process.
This material is mostly in French.

Keywords: metadata, Data Life Cycle, Reproducibility, Data management plan

Resource type: Slides

Plant Phenotyping Data managment Webinar (MIAPPE)

The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...

Scientific topics: Plant biology, Phenomics, Data quality management, Data submission, annotation, and curation

Operations: Standardisation and normalisation

Resource type: Video, Slides

IFB Shiny training

Course organised by the French Institute of Bioinformatics (IFB) with the help of the Swiss Institute of Bioinformatics (SIB) in french
- 1st edition: 9-10 July 2019, Institut Pasteur (trainer: Frédéric Schütz)
- 2nd edition: 12-13 September 2019, Institut Pasteur (trainers: Christophe Malabat...

Keywords: R-programming, Reproducible Science

FAIR principles applied to bioinformatics

The French Institute of Bioinformatics (IFB) has organised in partnership with the Institute of Integrative Biology (I2BC) a training course for bioinformaticians and biostatisticians wishing to implement the "FAIR" principles (Findable, Accessible, Interoperable, Reusable) in their analysis and...

Keywords: FAIR, Reproducible Science, Open science, Data analysis, Data processing

Resource type: Training materials

Plant Phenotyping Data managment (MIAPPE)

This training material has been used in a two-day training workshop on data management organized by Elixir and the Wheat Initiative.

It provides an overview of current practices and methods for plant phenotyping data standardization, and how to deal with the variability and heterogeneity...

Scientific topics: Phenomics, Plant biology, Data management

Operations: Annotation, Formatting

Keywords: Plant Phenotyping, Data-format, data sharing

Resource type: Training materials

WheatIS DataDiscovery webinar

The WheatIS project aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is...

Scientific topics: Data management

Keywords: wheat, information system, data discovery

Resource type: Webinar, Slides, Video

Getting started with Bioschemas

"How to do" guidelines about:

  • What and why schema.org
  • What and why bioschemas.org
  • How-to select the right profile for your resource
  • How-to mark up your own resource with Bioschemas

Keywords: Bioschemas, Standards

Application of RDF-based models and tools for enhancing interoperable

 

Application of RDF-based models and tools for enhancing interoperable use of biomedical resources
 

Keywords: biohackaton 2018

Development of a GA4GH-compliant, language-agnostic workflow execution service

 

Development of a GA4GH-compliant, language-agnostic workflow execution service
 

Keywords: biohackaton 2018

Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships

 

Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships
 

Keywords: biohackaton 2018

From Biotea to Bioschemas: definition of profiles required to represent scholarly publications

 

From Biotea to Bioschemas: definition of profiles required to represent scholarly publications
 

Keywords: biohackaton 2018

Assessing the FAIRness of Training Materials

 

Assessing the FAIRness of Training Materials
 

Keywords: biohackaton 2018

Alternative episodes for the 4 Open Source Software

 

Alternative episodes for the 4 Open Source Software (4OSS) lesson focused on different Open Source technologies: Github, Docker, Jupyter Notebook and so on
 

Keywords: biohackaton 2018

JSON schema validation with ontologies

 

JSON schema validation with ontologies
 

Keywords: biohackaton 2018

Development of a catalog of federated SPARQL queries in the field of Rare Diseases

 

Development of a catalog of federated SPARQL queries in the field of Rare Diseases
 

Keywords: biohackaton 2018

Building a semantic search engine for biology publications using event stream processing

 

Building a semantic search engine for biology publications using event stream processing
 

Keywords: biohackaton 2018

Adding bioschemas markup to data repository

 

Adding bioschemas markup to data repository
 

Keywords: biohackaton

Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)

 

Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)
 

Keywords: biohackaton 2018

Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits

 

Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits
 

Keywords: biohackaton 2018

CWL support in Galaxy

 

CWL support in Galaxy
 

Keywords: biohackaton 2018

Transfer of Research Assets between FAIRDOM SEEKs

 

Transfer of Research Assets between FAIRDOM SEEKs
 

Keywords: biohackaton 2018

Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment

 

Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment
 

Keywords: biohackaton 2018

Galaxy training material improvement and extension

 

Galaxy training material improvement and extension
 

Keywords: biohackaton 2018

Pathway effect prediction for protein targets

 

Pathway effect prediction for protein targets
 

Keywords: biohackaton 2018