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9 materials found

Keywords: NGS 


Functional genomics III

In this online course, we will look at why, when, where to submit your functional genomics data. 

Scientific topics: Functional genomics

Keywords: Metadata, Functional genomics resources, Data submission, Microarray, Next-generation sequencing, NGS

Resource type: e-learning

Functional genomics II

This online course introduces common technologies in functional genomics studies, including microarrays and next generation sequencing (NGS), with a special focus on RNA-sequencing (RNA-seq). We look at important considerations when designing your experiments, data analysis methods, and discuss...

Scientific topics: Functional genomics, Gene expression, Genotype and phenotype, Microarray experiment, RNA-Seq

Keywords: Next-generation sequencing, NGS, Real-time PCR, Microarray, Epigenetic modifications, Histone modifications, DNA-protein interaction, RNA-protein interaction

Resource type: e-learning

Chip-seq: Motif Analysis Tutorial

Introduction
Goal
The aim is to :
Get familiar with motif analysis of ChIP-seq data.
Learn de novo motif discovery methods.
In practice :
Motif discovery with peak-motifs
Differential analysis
Random controls

Keywords: Chip-seq, Motif analysis, NGS, Pattern recognition

Docker version of Welsh Gene Park NGS course

Welcome to the IFR Dockerised version of the Welsh Genepark's
Introduction to Command-line NGS Analysis course!
The original materials belong to Wesh Genepark and the original
materials and software can be found here.

This...

Keywords: NGS, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis

Welcome to the IFR Dockerised version of the Welsh Genepark's
Introduction to Command-line NGS Analysis course!
The original materials belong to Welsh Genepark and the original
materials and software can be found here.

This...

Keywords: NGS, Command line, IFR, Institute of Food Research, Quadram Institute

Chip-seq: Peak calling tutorial

The aim is to :
Understand how to process reads to obtain peaks (peak-calling).
Become familiar with differential analysis of peaks
In practice :
Obtain dataset from GEO
Analyze mapped reads
Obtain set(s) of peaks, handle replicates
Differential analysis of peak

Keywords: Chip-seq, NGS, Peak calling

Chip Seq: Annotation and visualization Lesson

How to add biological meaning to peaks

Keywords: Annotation, Chip-seq, Data Visualization, NGS

Chip Seq: Annotation and visualization Tutorial

Global Objective
Given a set of ChIP-seq peaks annotate them in order to find associated genes, genomic categories and functional terms.

Keywords: Annotation, Chip-seq, Data Visualization, NGS

3-day hands-on NGS workshop

This document is the trainee exercise booklet for a 3 day hands-on Next Generation Sequencing workshop developed by Bioplatforms Australia, CSIRO and EMBL-EBI.  This workshop is aimed at bench biologists, PhD students or early career postdoctoral researchers or those new to the analysis of NGS...

Keywords: NGS, ChIPSeq, De novo genome assembly, RNASeq