TeSS Training eSupport System

RRegrs package

This tutorial explains how to use a collection of R regression tools for estimating the optimal model via a fully validated procedure.

Keywords: Regression Models

RRegrs package https://enanomapper.github.io/tutorials/RRegrs/RRegrs.html https://tess.elixir-europe.org/materials/rregrs-package This tutorial explains how to use a collection of R regression tools for estimating the optimal model via a fully validated procedure. Regression Models PhD students post-docs

How to use the AffyQC web tool of ArrayAnalysis.org for quality control and pre-processing of Affymetrix microarray data

This tutorial explains how to use the AffyQC web tool of ArrayAnalysis.org for quality control and pre-processing of Affymetrix microarray data.

Keywords: Microarray data analysis, Quality control and data pre-processing, Affymetrix microarrays, Systems biology, Pathway and network analyis

How to use the AffyQC web tool of ArrayAnalysis.org for quality control and pre-processing of Affymetrix microarray data https://enanomapper.github.io/tutorials/QCandpreprocessing/QCandpreprocessing.html https://tess.elixir-europe.org/materials/how-to-use-the-affyqc-web-tool-of-arrayanalysis-org-for-quality-control-and-pre-processing-of-affymetrix-microarray-data This tutorial explains how to use the AffyQC web tool of ArrayAnalysis.org for quality control and pre-processing of Affymetrix microarray data. Microarray data analysis, Quality control and data pre-processing, Affymetrix microarrays, Systems biology, Pathway and network analyis PhD students post-docs

How to use the statistics module of ArrayAnalysis.org for statistics analysis of microarray data

This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website.

Keywords: ArrayAnalysis.org, microarray

How to use the statistics module of ArrayAnalysis.org for statistics analysis of microarray data https://enanomapper.github.io/tutorials/Statistics/readme.html https://tess.elixir-europe.org/materials/how-to-use-the-statistics-module-of-arrayanalysis-org-for-statistics-analysis-of-microarray-data This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website. Anwesha Bohler Egon Willighagen Friederike Ehrhart Lars Eijssen Linda Rieswijk Penny Nymark ArrayAnalysis.org, microarray post-docs

How to make a new pathway for WikiPathways using PathVisio

This tutorial explains how to a new pathway for WikiPathways using PathVisio.

Keywords: Systems biology, Pathway analysis, Network analysis, Microarray data analysis, Nanomaterials

How to make a new pathway for WikiPathways using PathVisio https://enanomapper.github.io/tutorials/Pathway/Pathway.html https://tess.elixir-europe.org/materials/how-to-make-a-new-pathway-for-wikipathways-using-pathvisio This tutorial explains how to a new pathway for WikiPathways using PathVisio. Systems biology, Pathway analysis, Network analysis, Microarray data analysis, Nanomaterials PhD students post-docs

Omics descriptors calculation R package

This tutorial explains how to generate a new set of GO descriptors using two novel created R packages.

Keywords: Gene Ontology

Omics descriptors calculation R package https://enanomapper.github.io/tutorials/Omics%20descriptors%20calculation/Omics%20descriptors%20calculation%20R%20package.html https://tess.elixir-europe.org/materials/omics-descriptors-calculation-r-package This tutorial explains how to generate a new set of GO descriptors using two novel created R packages. Gene Ontology PhD students post-docs

Pathway module of ArrayAnalysis.org

This tutorial explains how to use the Pathway module of ArrayAnalysis.org for pathway analysis of microarray data.

Keywords: Gene Ontology

Pathway module of ArrayAnalysis.org https://enanomapper.github.io/tutorials/Pathway_analysis/Pathway%20analysis.html https://tess.elixir-europe.org/materials/pathway-module-of-arrayanalysis-org This tutorial explains how to use the Pathway module of ArrayAnalysis.org for pathway analysis of microarray data. Gene Ontology PhD students post-docs

Entering and analysing nano safety data

Tutorial that covers various aspects of working with the eNanoMapper database. It discussed searching, adding, and downloading data from an eNanoMapper database.

Keywords: ontologies, enanomapper

Entering and analysing nano safety data https://enanomapper.github.io/tutorials/Entering_and_analysing_nano_safety_data/readme.html https://tess.elixir-europe.org/materials/entering-and-analysing-nano-safety-data Tutorial that covers various aspects of working with the eNanoMapper database. It discussed searching, adding, and downloading data from an eNanoMapper database. Egon Willighagen Nina Jeliazkova ontologies, enanomapper Bioinformatician PhD students post-docs

Adding ontology terms

This tutorial describes how terms can be added to the eNanoMapper ontology.

Keywords: ontologies, enanomapper

Adding ontology terms https://enanomapper.github.io/tutorials/Added%20ontology%20terms/README.html https://tess.elixir-europe.org/materials/adding-ontology-terms This tutorial describes how terms can be added to the eNanoMapper ontology. Egon Willighagen ontologies, enanomapper post-docs

Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé

This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online.

Keywords: nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé

Resource type: Tutorial

Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé https://enanomapper.github.io/tutorials/BrowseOntology/Tutorial%20browsing%20eNM%20ontology.html https://tess.elixir-europe.org/materials/browsing-the-enanomapper-ontology-with-bioportal-aberowl-and-protege This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online. Egon Willighagen Friederike Ehrhart Linda Rieswijk nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé PhD students post-docs

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