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RDMbites | REDCap: how to use the randomization module

In this video, I will show you how to use the randomization module in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to export your data/subsets of data

In this video, I will show you how to export your data/subsets of your data from REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to backup your project

In this video,I will show you how to back-up your project in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to request an API token

In this video, I will show you how to request an API token in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to make changes to your live REDCap project

In this video, I will show you how to make changes to your REDCap project, such as changing existing fields or adding new fields for data collection, while it is live and collecting data.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to archive your project

In this video, I will show you how to archive your project in REDCap, once you have finished data collection.

Keywords: REDCap, clinical, sensitive data

Resource type: Video

RDMbites | What is a Data Steward?

An Introduction to what a Data Steward is

Keywords: Data Steward, Data management

Resource type: Video

RDMbites | Bioimage metadata – REMBI

In this RDMbite we will be speaking about REMBI and its relevance to annotating bioimage metadata

Keywords: REMBI, metadata

Resource type: Video

RDMbites | Bioimage metadata – REMBI: study

In this RDMbite we will be talking about the first aspect of the REMBI metadata guidelines for bioimaging data.

Keywords: REMBI, metadata

Resource type: Video

RDMbites | Bioimage metadata – REMBI: study component

In this RDMbite you will learn about another aspect of REMBI metadata: the Study Component. More specifically, you will learn about the types of metadata that should be collected to describe each study component for bioimage data and how to store it.

Keywords: metadata, REMBI

Resource type: Video

RDMbites | Bioimage metadata – REMBI: biosample

You will learn about the metadata that should be used to describe each biosample for bioimage data and how to store it.

Keywords: REMBI, biosample, metadata

Resource type: Video

RDMbite | Bioimage metadata – REMBI: specimen

In this RDMbite, you will learn about REMBI Specimen, the metadata you should be collecting to describe it and how to store it.

Keywords: REMBI, Image Data, metadata

Resource type: Video

RDMbites | Bioimage metadata - REMBI: image acquisition

In this RDMbite you will learn about the Image Acquisition module of REMBI metadata. You will learn about the metadata that should be collected to describe the method of image acquisition and how to store it.

Keywords: Image, REMBI, metadata

Resource type: Video

RDMbites | Bioimage metadata – REMBI: image data

The image data module of REMBI

Keywords: REMBI, Image Data, data collection

Resource type: Video

RDMbites | Bioimage metadata – REMBI: image correlation

This RDMbite tells you about the the Image Correlation module of REMBI metadata

Keywords: REMBI, metadata

Resource type: Video

RDMbites | Bioimage metadata – REMBI: analysed data

Here you will learn about the analysed data module of REMBI metadata. You will see what metadata should be collected to describe the analysed data and how to store it

Keywords: REMBI, metadata, bioimage

Resource type: Video

RDMbites | Storing bioimage data

In this RDMbite you will learn what to consider when planning storage for bioimage data and some ideas of how to organise your data.

Keywords: bioimage, data storage

Resource type: Video

RDMbites | Storing bioimage metadata with OMERO

Storing bioimage Metadata with OMERO

Keywords: OMERO, bioimaging, data storage

Resource type: Video

RDMbites | Sensitive data: an introduction

An introduction to sensitive data in the Life Sciences

Keywords: data, life-sciences, sensitive

Resource type: Video

RDMbites | Computer data security

This RDMbite talks about how to work with data on your computer securely

Keywords: data security, data, sensitive data

Resource type: Video

RDMbites | FASTQ files in colorspace

FASTQ files derived from colorspace sequencing.

Keywords: FastQ, Data sharing

Resource type: Video

RDMbites | Sequencing Data QC: causes and consequences

Learning the importance of performing quality control on high-throughput sequencing data.

Keywords: Sequencing, FastQC, QC, data

Resource type: Video

RDMbites | Sequencing data QC: trimming

Sequencing data QC, trimming raw sequencing reads

Keywords: sequencing data, FastQC

Resource type: Video

RDMbites | FASTQ format

In this RDMbite you will learn about the data stored within FASTQ files

Keywords: FASTQ, Data storage

Resource type: Video

RDMbites | Sequencing Data QC: FastQC metrics

Sequencing data quality control metrics generated by the widely used program FastQC.

Keywords: Sequencing, data, FastQC

Resource type: Video

RDMbites | RNAseq expression data

In this RDMbite you will learn about common units for gene, or transcript, expression, including some which you could argue could be retired but are still very common in databases and publications. We’ll discuss the drawbacks of some metrics, and make the case for using TPMs as standard.

Keywords: RNAseq, data

Resource type: Video

RDMbites | Data storage of sensitive data: read-only and encryption

Data storage of sensitive data: read-only and encryption

Keywords: Data storage, sensitive data

Resource type: Video

RDMbites | How to write a data sharing agreement between collaborators

How to write a data sharing agreement between collaborators

Keywords: data stewardship, data sharing, sensitive data

Resource type: Video

RDMbites | How to write a data sharing agreement for public use of data

How to write a data sharing agreement for public use of data

Keywords: data sharing, sensitive data

Resource type: Video

Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial

The questions this addresses are:
- How to start Panoply interactive environment in Galaxy?
- How to inspect EBV cube netCDF data?
- How to make a plot with Panoply?
- Where to save your plots in Panoply?
- How to customize plots in Panoply?
- How to generate animation in Panoply?

The...

Scientific topics: Ecology

Keywords: ecology, interactive-tools, EBV cube, Data visualization

Resource type: hands-on tutorial