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Informatics on High-Throughput Sequencing Data 2018 Module 2-Data Visualization

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 2-Data Visualization https://tess.elixir-europe.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-2-data-visualization Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics on High-Throughput Sequencing Data 2018 Module 1-Introduction to High-Throughput Sequencing

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 1-Introduction to High-Throughput Sequencing https://tess.elixir-europe.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-1-introduction-to-high-throughput-sequencing Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Exploratory Analysis of Biological Data using R 2018

Course covered for this workshop are broadly relevant for many areas of modern, quantitative biology such as flow cytometry, expression profile analysis, function prediction and more.

Exploratory Analysis of Biological Data using R 2018 https://tess.elixir-europe.org/materials/exploratory-analysis-of-biological-data-using-r-2018 Course covered for this workshop are broadly relevant for many areas of modern, quantitative biology such as flow cytometry, expression profile analysis, function prediction and more. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate students
Introduction to R 2018

Course introduces essential ideas and tools of R, and covers statistical tests in R.

Introduction to R 2018 https://tess.elixir-europe.org/materials/introduction-to-r-2018 Course introduces essential ideas and tools of R, and covers statistical tests in R. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate students
Bioinformatics for Cancer Genomics 2018 Module 15-Clinical Data Integration

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 15-Clinical Data Integration https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-15-clinical-data-integration Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate Students
Bioinformatics for Cancer Genomics 2018 Module 14-Variants to Networks

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 14-Variants to Networks https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-14-variants-to-networks Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate Students
Bioinformatics for Cancer Genomics 2018 Module 13-Genes to Pathways

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 13-Genes to Pathways https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-13-genes-to-pathways Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate Students
Bioinformatics for Cancer Genomics 2018 Module 12-Big Data Analytics in the Cloud

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 12-Big Data Analytics in the Cloud https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-12-big-data-analytics-in-the-cloud Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.
Bioinformatics for Cancer Genomics 2018 Module 11-Working Reproducibly in the Cloud

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 11-Working Reproducibly in the Cloud https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-11-working-reproducibly-in-the-cloud Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Post-Doctoral Fellows Graduate Students Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2018 Module 10-Sharing and Scaling a VM

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 10-Sharing and Scaling a VM https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-10-sharing-and-scaling-a-vm Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 9-Gene Fusion and Rearrangements

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 9-Gene Fusion and Rearrangements https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-9-gene-fusion-and-rearrangements Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2018 Module 8-Gene Expression

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 8-Gene Expression https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-8-gene-expression Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 7-Somatic Mutations and Annotations

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 7-Somatic Mutations and Annotations https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-7-somatic-mutations-and-annotations Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 6-Copy Number Variants

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 6-Copy Number Variants https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-6-copy-number-variants Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 5-Genome Assembly

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 5-Genome Assembly https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-5-genome-assembly Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 4-Genome Alignment

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 4-Genome Alignment https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-4-genome-alignment Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 3-Cancer Databases

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 3-Cancer Databases https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-3-cancer-databases Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Bioinformatics for Cancer Genomics 2018 Module 2-Ethics of Data Usage and Security

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 2-Ethics of Data Usage and Security https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-2-ethics-of-data-usage-and-security Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2018 Module 1-Introduction to Cancer Genomics

Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.

Bioinformatics for Cancer Genomics 2018 Module 1-Introduction to Cancer Genomics https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2018-module-1-introduction-to-cancer-genomics Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Working with Big Cancer Data in the Collaboratory Cloud 2017 Module 2-Big Data Analysis in the Cloud

Course covers the bioinformatics tools to provide a hands-on introduction to launching and configuring a virtual machine, accessing Cloud-based data sets.

Working with Big Cancer Data in the Collaboratory Cloud 2017 Module 2-Big Data Analysis in the Cloud https://tess.elixir-europe.org/materials/working-with-big-cancer-data-in-the-collaboratory-cloud-2017-module-2-big-data-analysis-in-the-cloud Course covers the bioinformatics tools to provide a hands-on introduction to launching and configuring a virtual machine, accessing Cloud-based data sets. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate Students
Working with Big Cancer Data in the Collaboratory Cloud 2017 Module 1-Introduction to the Cancer Genome Collagboratory

Course covers the bioinformatics tools to provide a hands-on introduction to launching and configuring a virtual machine, accessing Cloud-based data sets.

Working with Big Cancer Data in the Collaboratory Cloud 2017 Module 1-Introduction to the Cancer Genome Collagboratory https://tess.elixir-europe.org/materials/working-with-big-cancer-data-in-the-collaboratory-cloud-2017-module-1-introduction-to-the-cancer-genome-collagboratory Course covers the bioinformatics tools to provide a hands-on introduction to launching and configuring a virtual machine, accessing Cloud-based data sets. Researchers Post-Doctoral Fellows Graduate Students Biologists, Genomicists, Computer Scientists
Informatics for RNA-Seq Analysis 2017 Module 7-Functional Annotation and Analysis of Transcripts

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 7-Functional Annotation and Analysis of Transcripts https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-7-functional-annotation-and-analysis-of-transcripts Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Biologists, Genomicists, Computer Scientists Graduate Students Post-Doctoral Fellows
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene

Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.

Scientific topics: Genetic variation, Genomics

Resource type: Tutorial

How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping. Genetic variation Genomics Biologists
#metawinterschool contribution by BiGCaT

Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis.

Scientific topics: Metabolomics

Keywords: Metabolomics, Identifiers

Resource type: Tutorial

#metawinterschool contribution by BiGCaT https://tess.elixir-europe.org/materials/metawinterschool-contribution-by-bigcat Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis. Metabolomics Metabolomics, Identifiers Biologists
BridgeDbR Tutorial

Bioconductor Vignette on how to use BridgeDb in the R environment for identifier mapping for genes, proteins, and metabolites.

Resource type: Tutorial, Vignette

BridgeDbR Tutorial https://tess.elixir-europe.org/materials/bridgedbr-tutorial Bioconductor Vignette on how to use BridgeDb in the R environment for identifier mapping for genes, proteins, and metabolites. Biologists Chemists
Galaxy Server administration - Ansible

Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Ansible? - How and when to use Ansible? - How to write a role? - How to leverage community build roles? Objectives of the tutorial: - Learn Ansible basics - Write a simple role - Install a...

Resource type: Tutorial

Galaxy Server administration - Ansible https://tess.elixir-europe.org/materials/galaxy-server-administration-ansible Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Ansible? - How and when to use Ansible? - How to write a role? - How to leverage community build roles? Objectives of the tutorial: - Learn Ansible basics - Write a simple role - Install a role from Ansible Galaxy
Informatics for RNA-Seq Analysis 2017 Module 6-Genome-free De Novo Transcriptome Assembly

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 6-Genome-free De Novo Transcriptome Assembly https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-6-genome-free-de-novo-transcriptome-assembly Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Biologists, Genomicists, Computer Scientists Graduate Students Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-5-isoform-discovery-and-alternative-expression Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-4-reference-free-alignment Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate Students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 3-Expression and Differential Expression

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 3-Expression and Differential Expression https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-3-expression-and-differential-expression Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate Students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows