Register training material
11 materials found

Keywords: metagenomics 


Hands-on for 'Assembly of metagenomic sequencing data' tutorial

The questions this addresses are:
- Why metagenomic data should be assembled?
- What is the difference between co-assembly and individual assembly?
- What is the difference between reads, contigs and scaffolds?
- How tools based on De Bruijn graph work?
- How to assess the quality of...

Scientific topics: Metagenomics

Keywords: assembly, assembly, metagenomics

Resource type: hands-on tutorial

Hands-on for 'Identification of the micro-organisms in a beer using Nanopore sequencing' tutorial

The questions this addresses are:
- How can yeast strains in a beer sample be identified?
- How can we process metagenomic data sequenced using Nanopore?

The objectives are:
- Inspect metagenomics data
- Run metagenomics tools
- Identify yeast species contained in a sequenced beer sample...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore, beer, citizen science, metagenomics

Resource type: hands-on tutorial

Organisation and utilisation of hologenomic datasets – course notes

This course covered the generation and application of large-scale holo-omic data sets, such as those produced within the HoloFood project. This course was run in September 2022, in-person in Bilbao, as part of the 1st Applied Hologenomics Conference. These course notes include the lecture slides...

Scientific topics: Metatranscriptomics, Sample collections, Metabolomics, Metagenomics

Keywords: hologenomics, metagenomics, Metabolomics, MGnify, Workshop

Resource type: Slides, course materials, hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
-...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial

The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?

The objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?"
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

Hands-on for 'Antibiotic resistance detection' tutorial

The questions this addresses are:
- How do I assemble a genome with Nanopore data?
- How do I get more information about the structure of the genomes?
- How do I get more information about the antimicrobial resistance genes?

The objectives are:
- Perform Quality control on your reads
-...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore, plasmids, assembly, amr

Resource type: hands-on tutorial

Hands-on for 'Analyses of metagenomics data - The global picture' tutorial

The questions this addresses are:
- How to analyze metagenomics data?
- What information can be extracted of metagenomics data?
- What is the difference between amplicon and shotgun data?
- What are the difference in the analyses of amplicon and shotgun data?

The objectives are:
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (short)' tutorial

The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?

The objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial analysis with Nanopore data' tutorial

The questions this addresses are:
- How can we analyse the health status of the soil?
- How do plants modify the composition of microbial communities?

The objectives are:
- Use Nanopore data for studying soil metagenomics
- Analyze and preprocess Nanopore reads
- Use Kraken2 to assign a...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore

Resource type: hands-on tutorial

Slides for 'Introduction to metatranscriptomics' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: slides