Custom training: OpenRefine
The aim of this training is to help you use OpenRefine on your own data. This can contain subjects like:
load data files, import and parse data files from a URL
clean data files: rename columns, transform and edit cells, split multivalue cells...
transform data from one format to another:...
Scientific topics: Data quality management
Custom training: OpenRefine
https://www.bits.vib.be/training-list/110-bits/training/custom-trainings/236-custom-openrefine-training
https://tess.elixir-europe.org/materials/custom-training-openrefine
The aim of this training is to help you use OpenRefine on your own data. This can contain subjects like:
load data files, import and parse data files from a URL
clean data files: rename columns, transform and edit cells, split multivalue cells...
transform data from one format to another: e.g. merge data from two files using a column that is common to both data files, create new rows based on columns and vice versa...
export cleaned, transformed data
data manipulation pipelines
data dashboards
Alexander Botzki
Data quality management
Life Science Researchers
PhD students
post-docs
2016-04-22
2017-10-09
Protein Structure Analysis
This training session will provide the basics of protein structure determination and how this information is stored in databases. We will explore and search in online databases containing protein structure information. With the aid of the Yasara View program we will visualize the structure....
Scientific topics: Protein structure analysis
Protein Structure Analysis
https://www.bits.vib.be/training-list/111-bits/training/previous-trainings/90-protein-structure-analysis
https://tess.elixir-europe.org/materials/protein-structure-analysis
This training session will provide the basics of protein structure determination and how this information is stored in databases. We will explore and search in online databases containing protein structure information. With the aid of the Yasara View program we will visualize the structure. Different hands-on exercises will allow you to compare the structure of homologues, to predict a structural model of proteins without any structure information and to find homologuous structures. We will use the FoldX program to quantify various interactions in the structures.
Alexander Botzki
Protein structure analysis
Life Science Researchers
PhD students
post-docs
2016-04-22
2017-10-09
Data manipulation in OpenRefine
Most statistical and data mining tools assume that the data files are in a specific format, often completely different from the format that is created by the instrument that generates the data. Moreover, most of these tools only provide limited functionality for getting the raw data files in the...
Data manipulation in OpenRefine
https://www.bits.vib.be/training-overview/data-manipulation-in-openrefine
https://tess.elixir-europe.org/materials/data-manipulation-in-openrefine
Most statistical and data mining tools assume that the data files are in a specific format, often completely different from the format that is created by the instrument that generates the data. Moreover, most of these tools only provide limited functionality for getting the raw data files in the correct format. OpenRefine is a powerful tool for cleaning up messy data and transforming it in the required format.
Alexander Botzki
Life Science Researchers
PhD students
post-docs
2016-04-22
2016-06-15
