Training materials
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Using ASAP for Single-Cell Analysis
• beginnergenes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group -
Single-cell Transcriptomics
•• intermediategenes and genomes biochemistry biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics raphael gottardo group rémy bruggmann group -
Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis
• beginnerfunctional genomics genes and genomes next generation sequencing transcriptomics training -
Gene Expression made Useful Easily: Tools and Database of Bgee
• beginnerBgee genes and genomes evolution and phylogeny services and resources comparative genomics database curation data management data visualisation transcriptomics training marc robinson-rechavi group -
hands-on tutorial
Hands-on for 'Comparing inferred cell compositions using MuSiC deconvolution' tutorial
single-cell mouse human deconvolution bulk transcriptomics
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hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
single-cell human deconvolution bulk transcriptomics
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
single-cell human deconvolution bulk transcriptomics
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hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
hands-on tutorial
Hands-on for 'Inferring trajectories using Monocle3' tutorial
Transcriptomics single-cell 10x paper-replication transcriptomics