DSW Workshop for Finnish Data Support Personnel
Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
DSW Workshop for Finnish Data Support Personnel
https://zenodo.org/record/4686941#.YePytfiLpPZ
https://tess.elixir-europe.org/materials/dsw-workshop-for-finnish-data-support-personnel
Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with other systems in institutions, and other customizations.
Marek Suchánek
Tereza Machačová
Data management
DMP, DMP tools, data stewardship, FAIR, FAIR data
Researchers
data stewards
DS Wizard and its Use
This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
DS Wizard and its Use
https://www.natur.cuni.cz/eng/aktuality/seminar-data-management-plan?set_language=en
https://tess.elixir-europe.org/materials/ds-wizard-and-its-use
This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make data management planning easier and more efficient, as well as possibilities of customization and integrations with other systems in institutions.
Tereza Machačová
Vojtěch Knaisl
Jan Slifka
Data management
DMP, DMP tools, data stewardship, FAIR, FAIR data
Researchers
data stewards
ELIXIR AAI Engagement Meetings Materials
ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights.
In the **ELIXIR AAI Tas**, we are preparing regular **Community engagement meetings** where we would like to share and discuss together new AAI needs,...
Scientific topics: Computer science
Keywords: AAI, IAM, Authentication, authorisation
Resource type: Documentation, Presentation
ELIXIR AAI Engagement Meetings Materials
https://elixir-europe.org/platforms/compute/aai
https://tess.elixir-europe.org/materials/elixir-aai-engagement-meetings-materials
ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights.
In the **ELIXIR AAI Tas**, we are preparing regular **Community engagement meetings** where we would like to share and discuss together new AAI needs, requirements and ideas collected from the community, as well as share success stories with other infrastructures. Topics will be selected based on needs and interest and also in regard to future migration to LS AAI.
Mikael Linden
Dominik Frantisek Bucik
Jana Broncova
Computer science
AAI, IAM, Authentication, authorisation
software developers, bioinformaticians
Data publishing and archival
Slides for the "Data publishing and archival" session of the "Research Data Management and Stewardship Training" held on 14 June 2021 by ELIXIR-Luxembourg.
Keywords: Data publishing, data archiving, Data preserving
Resource type: Presentation
Data publishing and archival
https://doi.org/10.5281/zenodo.5524793
https://tess.elixir-europe.org/materials/data-publishing-and-archival
Slides for the "Data publishing and archival" session of the "Research Data Management and Stewardship Training" held on 14 June 2021 by ELIXIR-Luxembourg.
Olga Krebs
Alexey Kolodkin
Pinar Alper
Roland Krause
Nene Barry
Vilem Ded
Data publishing, data archiving, Data preserving
Master students
data stewards
Researchers
PhD candidates
Practicalities of data handling
Slides for the "Practicalities of data handling" session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data management, Data acquisition, Data security
Operations: Data handling
Keywords: data encryption, data protection, setup, checksums, Data transfer, Data storage, data organisation
Resource type: Presentation
Practicalities of data handling
https://doi.org/10.5281/zenodo.4068227
https://tess.elixir-europe.org/materials/practicalities-of-data-handling
Slides for the "Practicalities of data handling" session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Vilem Ded
Pinar Alper
Roland Krause
Nene Barry
Data management
Data acquisition
Data security
data encryption, data protection, setup, checksums, Data transfer, Data storage, data organisation
Researchers
PhD
Master students
Reproducible analysis
Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data architecture, analysis and design
Keywords: Workflows, Literate programming, Reproducible Science, Data analysis
Resource type: Presentation
Reproducible analysis
https://doi.org/10.5281/zenodo.4071505
https://tess.elixir-europe.org/materials/reproducible-analysis
Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg.
Roland Krause
Pinar Alper
Vilem Ded
Data architecture, analysis and design
Workflows, Literate programming, Reproducible Science, Data analysis
PhD candidates
Researchers
ELN basics training materials
Electronic laboratory notebooks - basic intro in their use and functionality
Resource type: Presentation, hackathon
ELN basics training materials
https://zenodo.org/record/4518805#.YFCyPucxlhE
https://tess.elixir-europe.org/materials/eln-basics-training-materials
Electronic laboratory notebooks - basic intro in their use and functionality
Anastasios Papadiamantis, UoB
Martin Himly, PLUS
experimental nanoscientists
Introduction to Nextflow workshop
workshop materials (mainly) in DSL2 aiming to get familiar with the Nextflow syntax by explaining basic concepts and building a simple RNAseq pipeline. Highlights also reproducibility aspects with adding containers (docker & singularity). Slides available...
Scientific topics: Workflows
Keywords: Nextflow, DSL2
Resource type: Presentation, course materials
Introduction to Nextflow workshop
https://github.com/vibbits/nextflow-jnj
https://tess.elixir-europe.org/materials/introduction-to-nextflow-workshop
workshop materials (mainly) in DSL2 aiming to get familiar with the Nextflow syntax by explaining basic concepts and building a simple RNAseq pipeline. Highlights also reproducibility aspects with adding containers (docker & singularity). Slides available [here](https://github.com/vibbits/nextflow-jnj/blob/master/presentation/slidedeck.pdf)
Tuur Muyldermans
Workflows
Nextflow, DSL2
bioinformaticians
Reproducible data analysis with RStudio, github and Rmarkdown
Best practices for writing reproducible data-analysis
Creating a reproducible and re-usable data-analysis environment with Rstudio
Input: https://github.com/vibbits/RDM-LS
Output: https://github.com/vibbits/RDM-LS-solution
Scientific topics: Data management, Data architecture, analysis and design
Keywords: Data analysis
Resource type: Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
https://osf.io/qrt95/
https://tess.elixir-europe.org/materials/reproducible-data-analysis-with-rstudio-github-and-rmarkdown
Best practices for writing reproducible data-analysis
Creating a reproducible and re-usable data-analysis environment with Rstudio
Input: https://github.com/vibbits/RDM-LS
Output: https://github.com/vibbits/RDM-LS-solution
Tuur Muyldermans
Data management
Data architecture, analysis and design
Data analysis
life scientists
Data security and encryption
1. Data security
2. Encryption
3. Passwords
Scientific topics: Data management, Data security
Keywords: data encryption
Resource type: Presentation
Data security and encryption
https://osf.io/k263z/
https://tess.elixir-europe.org/materials/data-security-and-encryption
1. Data security
2. Encryption
3. Passwords
Jan Lammertyn
Data management
Data security
data encryption
life scientists
Valorisation and intellectual properties in research data management
### Valorisation and IP
* Basics of Tech Transfer and IPR from an academic perspective
* Insights as to:
* Why is it important when handling and managing research data?
* How do IP rights fit in FAIR data principles
* When to safeguard data for proprietary protection?
* Where/how...
Scientific topics: Data management
Keywords: intellectual property protection
Resource type: Presentation
Valorisation and intellectual properties in research data management
https://osf.io/dht3z/
https://tess.elixir-europe.org/materials/valorisation-and-interlectual-properties-in-research-data-management
### Valorisation and IP
* Basics of Tech Transfer and IPR from an academic perspective
* Insights as to:
* Why is it important when handling and managing research data?
* How do IP rights fit in FAIR data principles
* When to safeguard data for proprietary protection?
* Where/how share and publish data if valorisation is in scope?
Griet Den Herder
Data management
intellectual property protection
life scientists
Preserve, publish and share your data
- why preserve data
- what data should be preserved
- how share data
- where to deposit your data
- Fairsharing, re3data
- ELIXIR Core Resources
- Data Formats
- Generic archives
Scientific topics: Data management, Data submission, annotation, and curation
Keywords: data formats, ELIXIR Core resources, FAIR data submission
Resource type: Presentation
Preserve, publish and share your data
https://osf.io/whj7t/
https://tess.elixir-europe.org/materials/preserve-publish-and-share-your-data
- why preserve data
- what data should be preserved
- how share data
- where to deposit your data
- Fairsharing, re3data
- ELIXIR Core Resources
- Data Formats
- Generic archives
Alexander Botzki
Data management
Data submission, annotation, and curation
data formats, ELIXIR Core resources, FAIR data submission
life scientists
Reusing existing data
- how to find existing data (OmicsDI, pubmed, BioStudies, Google Data search, Data Management Hub)
- licenses
- datasets as first-class research products
- research software as first-class research products
- data citations
Scientific topics: Data management
Keywords: data licenses, software licenses, data journal
Resource type: Presentation
Reusing existing data
https://osf.io/syx4m/
https://tess.elixir-europe.org/materials/reusing-existing-data
- how to find existing data (OmicsDI, pubmed, BioStudies, Google Data search, Data Management Hub)
- licenses
- datasets as first-class research products
- research software as first-class research products
- data citations
Alexander Botzki
Data management
data licenses, software licenses, data journal
life scientists
Organising your data: structure and versioning
how to store and organize data safe, easy and efficient - practical recommendation for folder structures and file naming schemes
Scientific topics: Data management
Keywords: data stewardship, data collection
Resource type: Presentation
Organising your data: structure and versioning
https://osf.io/fpvgy/
https://tess.elixir-europe.org/materials/organising-your-data-structure-and-versioning
how to store and organize data safe, easy and efficient - practical recommendation for folder structures and file naming schemes
Nele Pauwels
Data management
data stewardship, data collection
FAIRify your data: data documentation and metadata
“Documentation is a love letter that you write to your future self.”
Damian Conway (2005)
Make your data as useful as possible for “your future self” and others
Never forget what you did or how or why you did it
Always find beck your precious data (easily)
Make data understandable,...
Scientific topics: Data management
Keywords: data documentation, metadata
Resource type: Presentation
FAIRify your data: data documentation and metadata
https://osf.io/wbr7t/
https://tess.elixir-europe.org/materials/fairify-your-data-data-documentation-and-metadata
“Documentation is a love letter that you write to your future self.”
Damian Conway (2005)
Make your data as useful as possible for “your future self” and others
Never forget what you did or how or why you did it
Always find beck your precious data (easily)
Make data understandable, reproducible and reusable by “your future self” and others
Avoid misinterpretation
Flora D'Anna
Data management
data documentation, metadata
life scientists
Data Management Plans
dmponline.be - creating data management plans
why, what to cover, examples and self-assessment grids
Keywords: Data management planning
Resource type: Presentation
Data Management Plans
https://osf.io/c2g9k/
https://tess.elixir-europe.org/materials/data-management-plans
dmponline.be - creating data management plans
why, what to cover, examples and self-assessment grids
Laura Standaert
Data management planning
life scientists
Privacy and GDPR in the research life cycle
0. The basics
1. Planning your research from a GDPR point of view
2. From planning to collecting your data
3. Structuring and analyzing your data
4. Sharing, publishing, archiving and destroying your data
Scientific topics: Data management
Keywords: GDPR
Resource type: Presentation
Privacy and GDPR in the research life cycle
https://osf.io/5xhya/
https://tess.elixir-europe.org/materials/privacy-and-gdpr-in-the-research-life-cycle
0. The basics
1. Planning your research from a GDPR point of view
2. From planning to collecting your data
3. Structuring and analyzing your data
4. Sharing, publishing, archiving and destroying your data
Hanne Elsen
Data management
GDPR
life scientists
Research Data Management: Trends and requirements
Paula Oset - Research funders and journal policies
Scientific topics: Data management
Keywords: journal policies, research funding
Resource type: Presentation
Research Data Management: Trends and requirements
https://osf.io/xhp2e/
https://tess.elixir-europe.org/materials/research-data-management-trends-and-requirements
Paula Oset - Research funders and journal policies
Paula Oset
Data management
journal policies, research funding
life scientists
Introduction to Research Data Management and the data life cycle
RESEARCH DATA MANAGEMENT IN LIFE SCIENCES
Introduction to RDM & data lifecycle
Thomas Van de Velde (Data steward team Ghent University)
Keywords: research data, data management
Resource type: Presentation
Introduction to Research Data Management and the data life cycle
https://osf.io/mvrny/
https://tess.elixir-europe.org/materials/introduction-to-research-data-management-and-the-data-life-cycle
RESEARCH DATA MANAGEMENT IN LIFE SCIENCES
Introduction to RDM & data lifecycle
Thomas Van de Velde (Data steward team Ghent University)
Thomas Van de Velde
research data, data management
life scientists
Research Data Management in Life Sciences
The content provided via this link was used in the training on 9 and 10 November 2020 organized by Ghent University and Elixir Belgium and VIB in collaboration with Interreg Vlaanderen-Nederland: https://training.vib.be/all-trainings/research-data-management-life-sciences.
Scientific topics: Data management
Resource type: Presentation, Vignette, Video
Research Data Management in Life Sciences
https://osf.io/fpvgy/
https://tess.elixir-europe.org/materials/research-data-management-in-life-sciences
The content provided via this link was used in the training on 9 and 10 November 2020 organized by Ghent University and Elixir Belgium and VIB in collaboration with Interreg Vlaanderen-Nederland: https://training.vib.be/all-trainings/research-data-management-life-sciences.
Alexander Botzki
Laura Standaert
Tuur Muyldermans
Hanne Elsen
Paula Oset
Thomas Van de Velde
Flora D'Anna
Nele Pauwels
Griet Den Herder
Jan Lammertyn
Data management
Life Science Researchers
Integrating to ELIXIR AAI -- instructions for developers
This is a collection of videos, presentations and on-line materials for developers and administrators for integrating a service to ELIXIR AAI, the ELIXIR Compute platform service for user authentication and authorisation.
Scientific topics: Computer science
Keywords: AAI, IAM, Authentication, authorisation
Resource type: Webinar, Presentation, Documentation
Integrating to ELIXIR AAI -- instructions for developers
https://elixir-europe.org/services/compute/aai
https://tess.elixir-europe.org/materials/integrating-to-elixir-aai-instruction-for-developers
This is a collection of videos, presentations and on-line materials for developers and administrators for integrating a service to ELIXIR AAI, the ELIXIR Compute platform service for user authentication and authorisation.
Mikael Linden
Michal Prochazka
Dominik Frantisek Bucik
Jana Broncova
Computer science
AAI, IAM, Authentication, authorisation
software developers, bioinformaticians
Findacure's e-learning resources on rare diseases
Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups.
Scientific topics: Rare diseases
Keywords: Rare Diseases & Research
Resource type: Webinar, Video, Presentation, Training materials, e-learning
Findacure's e-learning resources on rare diseases
https://portal.findacure.org.uk/
https://tess.elixir-europe.org/materials/findacure-s-e-learning-video-library
Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups.
Rare diseases
Rare Diseases & Research
Patient Advocates
rare disease patients representatives
Data Management Planning
Slides for the Data Management Plannning session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg
Keywords: Data management plan
Resource type: Presentation
Data Management Planning
https://doi.org/10.5281/zenodo.3609525
https://tess.elixir-europe.org/materials/data-management-planning
Slides for the Data Management Plannning session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg
Pinar Alper
Data management plan
Researchers
data steward / data manager
PhD candidates
Master students
Introduction to FAIR principles
Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Keywords: FAIR data
Resource type: Presentation
Introduction to FAIR principles
https://doi.org/10.5281/zenodo.3609967
https://tess.elixir-europe.org/materials/introduction-to-fair-principles
Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Pinar Alper
Roland Krause
FAIR data
Researchers
data steward / data manager
PhD candidates
Master students