Tutorial

Simple Linux – An Introduction to Genomic Analysis on Linux

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This workshop introduces essential Linux commands and simple Bash scripts to streamline data manipulation tasks. We’ll cover key operations such as searching for patterns, globally modifying content, and aligning DNA sequences, such as FASTAQ and FASTA files.

DOI: https://doi.org/10.5281/zenodo.16530108

Licence: MIT License

Contact: Andrzej Tkacz, atkacz@ualg.pt

Keywords: Command-line, genomics

Target audience: Bioinformatician, Bioanalysts, Students

Resource type: Tutorial

Version: 1.1.0

Status: Active

Prerequisites:

bash command line, optional python

Learning objectives:

  1. Build command-line competency
  2. Prepare for server-side bioinformatics
  3. Showcase a few command-line tools to get and manipulate genomic data
  4. Visualize PCoA from abundance tables

Date created: 2025-04-16

Date published: 2025-08-07

Authors: Andrzej Tkacz, David Palecek

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