Register training material
13 materials found

Resource type: Slideshow 


Prediction of protein structures and complexes with AlphaFold on the HPC

At the end of 2020, results for the CASP14 (Critical Assessment for protein Structure Prediction) were released. Just like in 2018, DeepMind Technologies won the competition with their deep (machine) learning based AlphaFold prediction models. However, the leap in prediction accuracy now raised...

Scientific topics: Structure prediction, Machine learning, Protein structure analysis

Operations: Multiple sequence alignment, Structure visualisation

Keywords: AlphaFold Database (13181), Structure prediction

Resource type: Slideshow, Training materials

Epigenome Browser

Ting Wang (http://wang.wustl.edu/) addresses many of the challenges of navigating the complexity of genomic data and showcases the WashU Epigenome Browser that he is developing. The browser aims to give investigators maximum flexibility to explore and navigate the available genomic data in...

Keywords: Genome, Molecular

Resource type: Slideshow, Video

BiVi theme: Anatomy, Physiology and Atlases 2015

Richard Baldock and Bernard de Bono introduce session on bio-visualisation in Anatomy, Physiology and Atlases at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Keywords: Anatomy Physiology and Atlases

Resource type: Slideshow

BiVi theme: Genomes

Andy Yates introduces the Genomes session at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Keywords: Genome

Resource type: Slideshow

BiVi theme: Molecular - Structural molecular graphics

Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Keywords: Molecular

Resource type: Slideshow

Zegami: Image visualisation, annotation and searching

Stephen Taylor describes and demonstrates Zegami at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome

Resource type: Slideshow

Intermine 2.0

Yo Yehudi describes Intermine, an open source data warehouse and analysis system at 2nd BiVi in 2015
Created at: 2nd BiVi Annual Meeting.

Keywords: Databases

Resource type: Slideshow

Aequatus-vis

Anil Thanki describes the Aequatus-vis JavaScript plugin to visualise homologous genes through alignment and phylogeny information at 2nd BiVi in 2015. aequatus-vis preserves teh interactive functionality of Aequatus, an open-source web based tool to visualise homologous genes with phylogenetic...

Scientific topics: Phylogenetics

Keywords: Genome, Phylogenetics

Resource type: Slideshow

MARender: A Simple JavaScript Library for Biomedical Visualisation

Bill Hill and Richard Baldock describe MARender, a simple JavaScipt library for biomedical visualisation at 2nd BiVi in 2015. 
Created at: 2nd BiVi Annual Meeting.

Keywords: Anatomy Physiology and Atlases, Information visualisation

Resource type: Slideshow

Joint visualisation and analysis of large sequence data with Alvis and Sequence Bundles

Roland Schwarz's keynote about the joint visualisation and analysis of large sequence data with Alvis and Sequence Bundles at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Scientific topics: Phylogenetics

Keywords: Genome, Phylogenetics

Resource type: Slideshow

Interacting with large biomolecules using haptic feedback

Dr Stephen Laycock describes using InteractinHaptiMOL to interact with large biomolecules using haptic feedback at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Keywords: Molecular

Resource type: Slideshow

Reactome

Kostas Sidiropoulos disceusses the visualsation of biomolecular pathways and Reactome, a free, open-source, curated and peer-reviewed knowledge-base of biomolecular pathways at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.

Scientific topics: Pathway or network

Keywords: Pathway, Databases

Resource type: Slideshow

Visualization of Biomolecular Structures: State of the Art

Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on...

Keywords: Molecular, Information visualisation

Resource type: Slideshow