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91 materials found

Resource type: Video 


Plant Phenotyping Data managment Webinar (MIAPPE)

The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...

Scientific topics: Data submission, annotation and curation, Data quality management, Phenomics, Plant biology

Operations: Standardisation and normalisation

Resource type: Video, Slides

Plant Phenotyping Data managment Webinar (MIAPPE) https://tess.elixir-europe.org/materials/plant-phenotyping-data-managment-webinar-miappe The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking between phenotype and genotype datasets, relevant section of MIAPPE are beginning to be used for genotyping standards. This Webinar will give an overview of the current practices and methods for plant phenotyping data standardization, and how to deal with the variability and heterogeneity inherent to research and breeding data sets. Data management approaches at some of the major research organizations will be given as examples. The recording is available [here](https://youtu.be/4FOQPAWl6_M) and the slides are [here](https://drive.google.com/file/d/1FORlCX662T9dxiG4uzQwVXDXnq-sP0FP/view?usp=sharing) Cyril Pommier Anne-Françoise Adam-Blondon Célia Michotey Data submission, annotation and curation Data quality management Phenomics Plant biology Researchers Biologists, Genomicists, Computer Scientists Biologists software developers, bioinformaticians
A common framework for designing portable federated pipelines

This video describes a common framework for designing portable federated pipelines

Scientific topics: Data architecture, analysis and design

Keywords: data access, federated data analysis

Resource type: Video

A common framework for designing portable federated pipelines https://tess.elixir-europe.org/materials/a-common-framework-for-designing-portable-federated-pipelines This video describes a common framework for designing portable federated pipelines Alvaro Gonzalez Data architecture, analysis and design data access, federated data analysis
FAIR software tools

CINECA webinar discussing the importance of the FAIR principles for software tools used in research

Scientific topics: Software engineering

Keywords: FAIR, software tools, Software

Resource type: Video

FAIR software tools https://tess.elixir-europe.org/materials/fair-software-tools CINECA webinar discussing the importance of the FAIR principles for software tools used in research Software engineering FAIR, software tools, Software
Making cohort data FAIR

CINECA webinar about how to make data from cohort studies FAIR

Scientific topics: Data management, Data integration and warehousing

Keywords: FAIR data, Cohort data, Ontologies, Standards

Resource type: Video

Making cohort data FAIR https://tess.elixir-europe.org/materials/making-cohort-data-fair CINECA webinar about how to make data from cohort studies FAIR Data management Data integration and warehousing FAIR data, Cohort data, Ontologies, Standards
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?

CINECA webinar about the basics of FAIR health data.

Scientific topics: Data management

Keywords: FAIR data, Health data, Open science

Resource type: Video

Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality? https://tess.elixir-europe.org/materials/introduction-to-fair-principles-open-science-through-fair-health-data-networks-dream-or-reality CINECA webinar about the basics of FAIR health data. Data management FAIR data, Health data, Open science
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects

CINECA webinar discussing when to bring compute to the data

Scientific topics: Data architecture, analysis and design

Keywords: Cloud computing, Data analysis, Standards, Translational research

Resource type: Video

Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects https://tess.elixir-europe.org/materials/data-gravity-in-the-life-sciences-lessons-learned-from-the-hca-and-other-federated-data-projects CINECA webinar discussing when to bring compute to the data Data architecture, analysis and design Cloud computing, Data analysis, Standards, Translational research
Annotating data using next generation biobanking ontology (NGBO)

This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO).

Scientific topics: Ontology and terminology, Data integration and warehousing

Keywords: Standards, Ontologies, Data Integration, data harmonization, Standardised vocabulary

Resource type: Video

Annotating data using next generation biobanking ontology (NGBO) https://tess.elixir-europe.org/materials/annotating-data-using-next-generation-biobanking-ontology-ngbo This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO). Ontology and terminology Data integration and warehousing Standards, Ontologies, Data Integration, data harmonization, Standardised vocabulary
Applying data standards to the harmonization of COVID-19 datasets from different sources

This video describes how public health genomics has played a key role in international responses to the COVID-19 pandemic, and how data standards are being used to harmonize data across jurisdictions for Canadian COVID-19 surveillance and outbreak investigations.

Scientific topics: Data integration and warehousing

Keywords: Data integration, Standards, Standardised vocabulary, data harmonization, Ontologies

Resource type: Video

Applying data standards to the harmonization of COVID-19 datasets from different sources https://tess.elixir-europe.org/materials/applying-data-standards-to-the-harmonization-of-covid-19-datasets-from-different-sources This video describes how public health genomics has played a key role in international responses to the COVID-19 pandemic, and how data standards are being used to harmonize data across jurisdictions for Canadian COVID-19 surveillance and outbreak investigations. Data integration and warehousing Data integration, Standards, Standardised vocabulary, data harmonization, Ontologies Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).
Useful ontologies for harmonizing cohort data

This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data.

Scientific topics: Ontology and terminology, Data management, Data integration and warehousing

Keywords: Ontologies, Cohort data, data annotation

Resource type: Video

Useful ontologies for harmonizing cohort data https://tess.elixir-europe.org/materials/useful-ontologies-for-harmonizing-cohort-data This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data. Ontology and terminology Data management Data integration and warehousing Ontologies, Cohort data, data annotation Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).
Status Update Code of Conduct: Teaming up & Talking about it

CINECA webinar about the code of conduct for the sector of health research according to Art. 40 GDPR

Keywords: GDPR, Healthcare research, data harmonization

Resource type: Video

Status Update Code of Conduct: Teaming up & Talking about it https://tess.elixir-europe.org/materials/status-update-code-of-conduct-teaming-up-talking-about-it CINECA webinar about the code of conduct for the sector of health research according to Art. 40 GDPR GDPR, Healthcare research, data harmonization
Research Data Management in Life Sciences

The content provided via this link was used in the training on 9 and 10 November 2020 organized by Ghent University and Elixir Belgium and VIB in collaboration with Interreg Vlaanderen-Nederland: https://training.vib.be/all-trainings/research-data-management-life-sciences.

Scientific topics: Data management

Resource type: Presentation, Vignette, Video

Research Data Management in Life Sciences https://tess.elixir-europe.org/materials/research-data-management-in-life-sciences The content provided via this link was used in the training on 9 and 10 November 2020 organized by Ghent University and Elixir Belgium and VIB in collaboration with Interreg Vlaanderen-Nederland: https://training.vib.be/all-trainings/research-data-management-life-sciences. Data management Life Science Researchers
galaxy.sciensano.be

This training is meant specifically for the “Galaxy @Sciensano” that is available at https://galaxy.sciensano.be/ and serves two purposes. First, it serves as an introduction in how to handle and employ the Galaxy instance hosted by Sciensano. Secondly, is also serves as a tutorial into both the...

Scientific topics: Microbiology, Sequencing, Genomics, Public health and epidemiology, Bioinformatics

Resource type: Video, Tutorial

galaxy.sciensano.be https://tess.elixir-europe.org/materials/galaxy-sciensano-training This training is meant specifically for the “Galaxy @Sciensano” that is available at https://galaxy.sciensano.be/ and serves two purposes. First, it serves as an introduction in how to handle and employ the Galaxy instance hosted by Sciensano. Secondly, is also serves as a tutorial into both the basics of next-generation sequencing data analysis, but also more specialized topics of interest in public health (e.g. AMR detection, cgMLST analysis etc., SNP-based outbreak analysis etc.). The training consists specifically out of a series of training videos that are publicly available on YouTube. Microbiology Sequencing Genomics Public health and epidemiology Bioinformatics Microbiologists Public Health Professionals Life Science Researchers
Educational videos on rare and low prevalence complex diseases of the heart (ERN GUARD-Heart)

Educational videos for experts

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Video, e-learning

Educational videos on rare and low prevalence complex diseases of the heart (ERN GUARD-Heart) https://tess.elixir-europe.org/materials/ern-guard-heart-educational-videos Educational videos for experts Rare diseases Rare Diseases & Research health professionals Health Care Professionals
Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET)

ERN ReCONNET proposes free online training and education.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, Video, e-learning

Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET) https://tess.elixir-europe.org/materials/ern-reconnet-educational-webinars ERN ReCONNET proposes free online training and education. Rare diseases Rare Diseases & Research Health Care Professionals health professionals
Webinars and Pills of knowledge Videos on rare vascular diseases (VASCERN)

Short single video lessons (of approximately 3-5 minutes long) and webinars.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: e-learning, Video

Webinars and Pills of knowledge Videos on rare vascular diseases (VASCERN) https://tess.elixir-europe.org/materials/vascern-webinars-and-pills-of-knowledge-videos Short single video lessons (of approximately 3-5 minutes long) and webinars. Rare diseases Rare Diseases & Research medical students Health Care Professionals health professionals
Genetics education for primary care resources from the Gen-Equip project

Gen-Equip project is a project combining education, primary care and genetics. Its aim is to enable health professionals who are working in primary care to update their knowledge and skills in genetics. The aims is the long-term outcome of improvement in care of patients with genetic conditions...

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Documentation, Video, Training materials, online modules, e-learning

Genetics education for primary care resources from the Gen-Equip project https://tess.elixir-europe.org/materials/genetics-education-for-primary-care-resources Gen-Equip project is a project combining education, primary care and genetics. Its aim is to enable health professionals who are working in primary care to update their knowledge and skills in genetics. The aims is the long-term outcome of improvement in care of patients with genetic conditions or concerns. They offer genetics education free of charge to those who want continuing medical or professional education in genetics. Rare diseases Rare Diseases & Research Primary care doctors health professionals
Granulomatosis with polyangiitis screencast

Royal College of General Practitioners webinars on Granulomatosis with polyangiitis (GPA)

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Video, e-learning

Granulomatosis with polyangiitis screencast https://tess.elixir-europe.org/materials/granulomatosis-with-polyangiitis-resources Royal College of General Practitioners webinars on Granulomatosis with polyangiitis (GPA) Rare diseases Rare Diseases & Research General Physicians
Findacure's e-learning resources on rare diseases

Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, Video, Presentation, Training materials, e-learning

Findacure's e-learning resources on rare diseases https://tess.elixir-europe.org/materials/findacure-s-e-learning-video-library Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups. Rare diseases Rare Diseases & Research Patient Advocates rare disease patients representatives
Annotating data using ontologies

This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems.

Scientific topics: Ontology and terminology, Data integration and warehousing, Data management

Keywords: Ontologies, Annotation, Data integration

Resource type: Video

Annotating data using ontologies https://tess.elixir-europe.org/materials/annotating-data-using-ontologies This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems. Ontology and terminology Data integration and warehousing Data management Ontologies, Annotation, Data integration
Solutions for overcoming cohort data integration challenges using ontology: an introduction

Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups.

Scientific topics: Data management, Data integration and warehousing, Ontology and terminology

Keywords: Ontologies, Data integration, Annotation

Resource type: Video

Solutions for overcoming cohort data integration challenges using ontology: an introduction https://tess.elixir-europe.org/materials/solutions-for-overcoming-cohort-data-integration-challenges-using-ontology-an-introduction Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups. Data management Data integration and warehousing Ontology and terminology Ontologies, Data integration, Annotation
Data harmonization and enrichment using EMBL-EBI ontology tools

This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data. The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators...

Scientific topics: Ontology and terminology, Data submission, annotation and curation, Data management

Keywords: CINECA, data harmonization, Annotation, Ontologies

Resource type: Video

Data harmonization and enrichment using EMBL-EBI ontology tools https://tess.elixir-europe.org/materials/data-harmonization-and-enrichment-using-embl-ebi-ontology-tools This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data. The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators access the tools through their respective websites. REST APIs are available for software developers who want to build systems based on these services. Ontology and terminology Data submission, annotation and curation Data management CINECA, data harmonization, Annotation, Ontologies biocurators software developers, bioinformaticians
WheatIS DataDiscovery webinar

The [WheatIS project](http://www.wheatis.org/) aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is...

Scientific topics: Data management

Keywords: wheat, information system, data discovery

Resource type: Webinar, Slides, Video

WheatIS DataDiscovery webinar https://tess.elixir-europe.org/materials/wheatis-datadiscovery-webinar The [WheatIS project](http://www.wheatis.org/) aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is endorsed by the [Wheat Initiative](https://www.wheatinitiative.org/). The [WheatIS DataDiscovery tool](https://urgi.versailles.inrae.fr/wheatis/) allows to search data in all the wheat resources around the world. This Webinar described how to use the tool, what data are available, how to join, etc. The replay is available on [Youtube](https://youtu.be/FoVXBhO8arY). Taner Sen Data management wheat, information system, data discovery Researchers Scientists
Data Stewardship Wizard Workshop (Feb 2020)

[Data Stewardship Wizard](ds-wizard.org) brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data management, Data governance

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides

Data Stewardship Wizard Workshop (Feb 2020) https://tess.elixir-europe.org/materials/data-stewardship-wizard-workshop-feb-2020 [Data Stewardship Wizard](ds-wizard.org) brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into per-project questionnaires to be filled by researchers. This workshop explains the core functionality of the Data Stewardship Wizard. Video recording from the workshop is available **[here](https://www.youtube.com/watch?v=aGpr6JFMuiE)**. Data management Data governance Data management plan, data stewardship, FAIR, data management, software tools Researchers data stewards
Mascot training course

The Mascot training course covers every aspect of protein identification and characterisation using Matrix Science products: Mascot Server, Mascot Distiller and Mascot Daemon. The webcast is on-demand, self-paced and free, and includes hands-on exercises.

Scientific topics: Proteomics

Keywords: Protein identification, Protein Mass Spectrometry

Resource type: Slides, Video, Training materials

Mascot training course https://tess.elixir-europe.org/materials/mascot-training-course The Mascot training course covers every aspect of protein identification and characterisation using Matrix Science products: Mascot Server, Mascot Distiller and Mascot Daemon. The webcast is on-demand, self-paced and free, and includes hands-on exercises. Proteomics Protein identification, Protein Mass Spectrometry Biologists bioinformaticians Biochemists mass spectrometry
Tools for data management planning

Having a data management plan is essential if we're to make the most of our own data and share it with others. Just like planning an experiment, we should plan what we are going to do with our data and how we are going to do it to ensure that we (and others) can use and re-use the data. If you...

Scientific topics: Data management

Keywords: Data managment plan

Resource type: Video

Tools for data management planning https://tess.elixir-europe.org/materials/tools-for-data-management-planning Having a data management plan is essential if we're to make the most of our own data and share it with others. Just like planning an experiment, we should plan what we are going to do with our data and how we are going to do it to ensure that we (and others) can use and re-use the data. If you have never made a data management plan before the process may initially seem daunting, but fortunately there are many tools out there to help you think through the what, where, how, why and when of data management. In this webinar Sarah Jones from the Digital Curation Centre and Rob Hooft from ELIXIR Netherlands show us two tools - DMP online and the ELIXIR Data Stewardship Wizard - and explain how they can help you apply data management and FAIR data practices in your own research. Data management Data managment plan Life Science Researchers
What happens to your data?

This webinar focuses on what happens to your data after you submit it to a public repository and addresses the question of data ownership. Keeva and Nancy introduce the concepts of FAIR data, metadata and standards. They then show you where you can find an appropriate place to share your data...

Scientific topics: Data management

Keywords: metadata, ArrayExpress

Resource type: Video

What happens to your data? https://tess.elixir-europe.org/materials/what-happens-to-your-data This webinar focuses on what happens to your data after you submit it to a public repository and addresses the question of data ownership. Keeva and Nancy introduce the concepts of FAIR data, metadata and standards. They then show you where you can find an appropriate place to share your data and give examples of how metadata and standards are used when you submit data to Metabolights and ArrayExpress. They also answer a few frequently asked data submission-related questions. Data management metadata, ArrayExpress Life Science Researchers
Why share your data?

Presented in two parts, this webinar will explore the value of sharing your data from an institutional and researcher perspective. Our first speaker, Ewan Birney, is one of the directors of EMBL-EBI. He speaks about how the growth in data over the past decade has changed the way that we...

Scientific topics: Data management

Keywords: data sharing

Resource type: Video

Why share your data? https://tess.elixir-europe.org/materials/why-share-your-data Presented in two parts, this webinar will explore the value of sharing your data from an institutional and researcher perspective. Our first speaker, Ewan Birney, is one of the directors of EMBL-EBI. He speaks about how the growth in data over the past decade has changed the way that we approach biology and how EMBL-EBI provides some of the infrastructure to allow data sharing. He finishes up by highlighting the benefits of data sharing to the EMBL-EBI and shares his top four reasons for sharing data. Our second speaker, Elisabeth Busch, is the head of the Vertebrate Genetics and Genomics Group at the Wellcome Sanger Institute and the University of Cambridge. She tells us about her experiences in sharing her own research data, and the reasons that she felt compelled to share her data including the advantages for her own research. Elisabeth Busch Data management data sharing Life Science Researchers
Managing and making the most of your data

In this webinar Marta Teperek & Yasemin Türkyilmaz-van der Velden provide an overview of what data management is highlighting common misconceptions, pitfalls and best practice. They pose the questions 'Is there a reproducibility crisis in science'? and 'How much data would lose if your laptop...

Scientific topics: Data management

Resource type: Video

Managing and making the most of your data https://tess.elixir-europe.org/materials/managing-and-making-the-most-of-your-data In this webinar Marta Teperek & Yasemin Türkyilmaz-van der Velden provide an overview of what data management is highlighting common misconceptions, pitfalls and best practice. They pose the questions 'Is there a reproducibility crisis in science'? and 'How much data would lose if your laptop was stolen?'. This is followed up with an exploration of the selfish benefits of data management and a few hints, tips to get you started on your data management journey. Data management
eLearning course about the importance of good research data management (RDM)

Within the framework of the Danish National Forum for Data Management, the Danish Universities have developed the eLearning course “Research Data Management”. This eLearning course in Research Data Management is brought to you by the Danish National Forum for Data Management, and is funded by...

Scientific topics: Data management

Resource type: Video

eLearning course about the importance of good research data management (RDM) https://tess.elixir-europe.org/materials/elearning-course-about-the-importance-of-good-research-data-management-rdm Within the framework of the Danish National Forum for Data Management, the Danish Universities have developed the eLearning course “Research Data Management”. This eLearning course in Research Data Management is brought to you by the Danish National Forum for Data Management, and is funded by Denmark’s Electronic Research Library (DEFF) and the Danish eInfrastructure Cooperation (DeiC). Data management Life Science Researchers
NanoCommons - Data Management in Nano Safety Research

Nanosafety research is rapidly transforming into a highly competitive and data-intensive field. Translational research, the introduction of nanoinformatics and the shift towards big data introduce the need for complex data capture, storage, handling, and analysis. This combination is called data...

Scientific topics: Data management

Resource type: Video

NanoCommons - Data Management in Nano Safety Research https://tess.elixir-europe.org/materials/nanocommons-data-management-in-nano-safety-research Nanosafety research is rapidly transforming into a highly competitive and data-intensive field. Translational research, the introduction of nanoinformatics and the shift towards big data introduce the need for complex data capture, storage, handling, and analysis. This combination is called data management and is the most neglected aspect of scientific research. Data management