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Content provider: ELIXIR 


The Turing Way

The Turing Way is a lightly opinionated guide to reproducible data science. Our goal is to provide all the information that researchers need at the start of their projects to ensure that they are easy to reproduce at the end. This also means making sure PhD students, postdocs, PIs, and...

Keywords: Data Science, Reproducibility, Version control, Reproducible Environment, Continuous integration

Resource type: e-learning

The Turing Way https://tess.elixir-europe.org/materials/the-turing-way The Turing Way is a lightly opinionated guide to reproducible data science. Our goal is to provide all the information that researchers need at the start of their projects to ensure that they are easy to reproduce at the end. This also means making sure PhD students, postdocs, PIs, and funding teams know which parts of the “responsibility of reproducibility” they can affect, and what they should do to nudge data science to being more efficient, effective, and understandable. Data Science, Reproducibility, Version control, Reproducible Environment, Continuous integration
ELIXIR EXCELERATE Train the Trainer

This set of course material was designed in the context of the ELIXIR EXCELERATE Train the Trainer programme. It covers four sessions: * Learning principles and how they apply to training and teaching * Teaching techniques that can be used to enhance learner engagement and participation *...

Keywords: Train the trainer, Pedagogy, Course development, Course design

Resource type: Training materials

ELIXIR EXCELERATE Train the Trainer https://tess.elixir-europe.org/materials/elixir-excelerate-train-the-trainer This set of course material was designed in the context of the ELIXIR EXCELERATE Train the Trainer programme. It covers four sessions: * Learning principles and how they apply to training and teaching * Teaching techniques that can be used to enhance learner engagement and participation * Lesson, course, and materials design * Assessment and feedback in training and teaching Train the trainer, Pedagogy, Course development, Course design Trainers Training instructors Training Designers teachers
PacBio de novo genome assembly - Hands on exercise

- Produce an assembled genomes from read file(s). - Produce genomes with : --– the awaited length, – few errors (INDELs). - Use different software packages to produce the genomes. - Understand the command line structure and some of the parameters used by the assemblers. - Polish the genome...

Resource type: PDF

PacBio de novo genome assembly - Hands on exercise https://tess.elixir-europe.org/materials/pacbio-de-novo-genome-assembly-hands-on-exercise - Produce an assembled genomes from read file(s). - Produce genomes with : --– the awaited length, – few errors (INDELs). - Use different software packages to produce the genomes. - Understand the command line structure and some of the parameters used by the assemblers. - Polish the genome to have good quality sequence.
Genome assembly with long reads

- News - PacBio read production and error patterns - Nanopore read production and error patterns - Assembly strategies - Assembly results - Conclusions

Resource type: PDF

Genome assembly with long reads https://tess.elixir-europe.org/materials/genome-assembly-with-long-reads - News - PacBio read production and error patterns - Nanopore read production and error patterns - Assembly strategies - Assembly results - Conclusions