Search results
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Introduction to FAIR Research Data Management & Data Management Plan
29 - 30 June 2023
Lausanne, Switzerland
Face-to-face
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Research Data Management: your ally on the way to your publication
14 June 2023
Face-to-face
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Research Data Management: your ally on the way to your publication - Brasil
28 July 2023
Face-to-face
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Research Data Management: your ally on the way to your publication
13 - 14 November 2023
Face-to-face
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Introduction to Research Data Management - Getting started with Data Management and Data Stewardship
13 June 2023
Face-to-face
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Workshops and courses
WEBINAR: Genomic data - improving discovery and access management
14 June 2023 @ 12:00 - 13:00
Online
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Meetings and conferences
Fellowship of the Data — RDM Trainer Network Meeting
21 - 22 June 2023
Berlin, Germany
Face-to-face
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Version Control with Git
2 - 4 October 2023
Lausanne, Switzerland
Face-to-face
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Nextflow for reproducible and automated data analysis
16 - 17 November 2023
Zwijnaarde, Belgium
Face-to-face
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Docker and Singularity (Apptainer) for reproducible and automated data analysis
12 - 13 October 2023
Brussel, Belgium
Face-to-face
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Introduction to openBIS
27 June 2023
Online
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Introduction to Git & GitHub
11 - 12 September 2023
Leuven, Belgium
Face-to-face
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Docker and Singularity for Reproducible Research: Getting Started with Containers
13 October 2023
Online
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Presentation
Data Management Plans
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Presentation
Research Data Management: Trends and requirements
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Metadata Registry
FAIRsharing Educational Material
• beginnerDatabases, Standards, Data Policies, FAIR -
Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management, data stewardship, data management plan, FAIR, data management, software tools, DMP templates, template development -
Presentation
Data Management Planning
• beginnerData management plan -
Presentation
Introduction to Research Data Management and the data life cycle
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course materials
Introduction to Persistent Identifiers
•• intermediateData management, system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance, Data management, GDPR, data protection, sensitive data -
Video, Slides, Webinar
A Gentle Introduction to DSW for Convergers
• beginnerData management, Data governance, Data managment plan, data stewardship, data management, software tools -
Video, Webinar
ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard
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Presentation
Privacy and GDPR in the research life cycle
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Presentation
Organising your data: structure and versioning
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Presentation
Data security and encryption
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Course materials
Research Data Management -course
• beginnerRDM, research data management, data management, CONVERGE -
PDF, slideck/ presentation
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
• beginnerData management, FAIR data, ELIXIR-CONVERGE, DMP, DMP tools, DMP templates, DMP evaluation, Data managment plan, research data management, FAIR principles, tools, template, competency, evaluation, online, e-learning, Spanish -
Slides
Data Management Planning workshop for new Life Science Projects
• beginnerData management, Deposition, Data handling, Data retrieval, data management plan, NeLS, TSD, metadata, sensitive, data publication, data protection, storage, identifiers, DMP, licensing, Compliance, data life cycle - collect, data life cycle - reuse, data life cycle - analyse, data life cycle - process, data life cycle - preserve, data life cycle - share, data life cycle - plan -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation, Medical informatics, FAIR data, Data management, Computer science, Ontology visualisation, Visualisation, Data retrieval, Data handling, Query and retrieval, Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science, Data management, FAIR data, Medical informatics, Query and retrieval, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science, Data management, FAIR data, Medical informatics, Data mining, Query and retrieval, Database search, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC, Interoperability -
course materials, Training materials, Slides
Implementation of Data Management Plans & Data Stewardship in practice
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Ecology Workshop Overview
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Presentation
Introduction to FAIR principles
• beginnerFAIR data -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics, FAIR data, Data management, Computer science, Validation, Data handling, Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF graph validation -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science, Data management, FAIR data, Medical informatics, Ontology and terminology, Data handling, Standardisation and normalisation, Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD, Interoperability -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science, Data management, FAIR data, Medical informatics, Ontology and terminology, Query and retrieval, Database search, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology, Medical informatics, FAIR data, Data management, Computer science, Editing, Ontology visualisation, Visualisation, Data handling, Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science, Data management, FAIR data, Medical informatics, Standardisation and normalisation, Design, Clinical data, RDF, Knowledge graph, Semantic framework, FAIR, Findability, Accessibility, Interoperability, Reusability -
Video, Webinar, Slides
Data Stewardship Wizard Workshop (Feb 2020)
• beginnerData governance, Data management, Data management plan, data stewardship, FAIR, data management, software tools -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science, Data management, FAIR data, Medical informatics, Design, Standardisation and normalisation, Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization -
Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics, Plant biology, Data management, Annotation, Formatting, Plant Phenotyping, Data-format, data sharing
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RDMbites: Data management essentials
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn the essentials of data management in the life sciences.
For watching the entire collection visit the [YouTube playlist]... -
RDMbites: Sensitive data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn the essentials of managing sensitive data in the life sciences
For watching the entire collection visit the [YouTube... -
RDMbites: Image data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn how to manage bioimage data.
For watching the entire collection visit the [YouTube playlist]... -
RDMbites: Sequencing data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learnhow to manage sequencing data.
For watching the entire collection visit the [YouTube playlist]...
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Fraunhofer FIT
As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT...
1 training materialFraunhofer FIT https://www.fit.fraunhofer.de/en.html https://tess.elixir-europe.org/content_providers/fraunhofer-fit As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT not only provides guidance, but also shapes the digital transformation in business, the environment and society. FIT’s interdisciplinary R&D teams are drawn from our staff of around 350 scientists from computer science, social science, business administration, economics, psychology, and engineering. They bring their expertise in designing and implementing information technology systems to bear on problems and needs from different areas of life. Our specific strength is our holistic approach to system development – from concept validation to implementation. We strategically evolve our expertise in IT, specific application fields, and our scientific excellence with the aim to be ahead of the market for our customers from industry and administration. /system/content_providers/images/000/000/661/original/fit.svg?1670846086 -
ELIXIR Norway
2 training materials0 events (15 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
ELXIR-UK DaSH
In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford.
The project aims to embed Research Data...
47 training materialsELXIR-UK DaSH https://elixiruknode.org/projects/elixir-uk-dash/ https://tess.elixir-europe.org/content_providers/elxir-uk-dash In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford. The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources, such as the RDMkit and the FAIR Cookbook. It focuses on building capacity and professionalising data stewardship while leveraging the local expertise within diverse UK institutions – creating a data management culture change from within the institutions. /system/content_providers/images/000/000/652/original/elixir-uk-dash-logo.svg?1660752689 -
eNanoMapper
eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports...
10 training materialseNanoMapper http://enanomapper.net/ https://tess.elixir-europe.org/content_providers/enanomapper eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports the collaborative safety assessment for ENMs by creating a modular, extensible infrastructure for transparent data sharing, data analysis, and the creation of computational toxicology models for ENMs. eNanoMapper was funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no 604134. /system/content_providers/images/000/000/092/original/logo.png?1528313779 -
FAIRDOM
Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology.
1 training material0 events (2 past events)FAIRDOM https://fair-dom.org/ https://tess.elixir-europe.org/content_providers/fairdom Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology. /system/content_providers/images/000/000/100/original/Screen_Shot_2018-09-06_at_15.54.17.png?1536245244 -
EMBL-ABR
EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.
EMBL-ABR aims to:- increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the...
9 training materials0 events (193 past events)EMBL-ABR https://www.embl-abr.org.au/ https://tess.elixir-europe.org/content_providers/embl-abr EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics. /system/content_providers/images/000/000/072/original/embl-australia-logo-colour-FIN-e1462860151765.jpg?1488905402 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
6 training materials0 events (7 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405 -
VBCF BioComp
BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide...
19 training materialsVBCF BioComp http://biocomp.vbcf.ac.at/training/index.html https://tess.elixir-europe.org/content_providers/vbcf-biocomp BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide custom-made data management solutions to research groups. BioComp offers trainings and consultations in the areas of bioinformatics, statistics and computational skills. /system/content_providers/images/000/000/045/original/biocomp.jpg?1469458450 -
ELIXIR
Building a sustainable European infrastructure for biological information, supporting life science research and its translation to medicine, agriculture, bioindustries and society.
ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the massive amounts of data...5 training materials4 events (307 past events)ELIXIR https://www.elixir-europe.org/ https://tess.elixir-europe.org/content_providers/elixir Building a sustainable European infrastructure for biological information, supporting life science research and its translation to medicine, agriculture, bioindustries and society. ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the massive amounts of data being generated every day by publicly funded research. It is a pan-European research infrastructure for biological information. ELIXIR provides the facilities necessary for life science researchers - from bench biologists to cheminformaticians - to make the most of our rapidly growing store of information about living systems, which is the foundation on which our understanding of life is built. /system/content_providers/images/000/000/050/original/38675_web.jpg?1476092978