Search results
dmponline.be - creating data management plans why, what to cover, examples and self-assessment grids
Keywords: Data management planning
Resource type: Presentation
Paula Oset - Research funders and journal policies
Scientific topics: Data management
Keywords: journal policies, research funding
Resource type: Presentation
Whether you are a researcher, standard/database developer, funder, journal editor, librarian or data manager, FAIRsharing can help you understand which standards are mature and appropriate to your use case. By mapping the relationships between standards and the databases that implement them, or...
Keywords: Databases, Standards, Data Policies, FAIR
Resource type: Metadata Registry
Slides for the Data Management Plannning session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg
Keywords: Data management plan
Resource type: Presentation
RESEARCH DATA MANAGEMENT IN LIFE SCIENCES Introduction to RDM & data lifecycle Thomas Van de Velde (Data steward team Ghent University)
Keywords: research data, data management
Resource type: Presentation
[Data Stewardship Wizard](ds-wizard.org) is a flexible questionnaire-based tool that uses Jinja2 templates to produce documents. It allows creating documents in practically any textual format. Such documents can be intended for both humans (HTML, Markdown, reStructuredText, etc.) and machines...
Scientific topics: Data management
Keywords: data stewardship, data management plan, FAIR, data management, software tools, DMP templates, template development
Resource type: Video, Slides, Webinar
Slides from Data Management Planning online workshop for Life Science Projects for researchers
Scientific topics: Data management
Operations: Data retrieval, Data handling, Deposition
Keywords: data management plan, NeLS, TSD, metadata, sensitive, data publication, data protection, storage, identifiers, DMP, licensing, Compliance, data life cycle - collect, data life cycle - reuse, data life cycle - analyse, data life cycle - process, data life cycle - preserve, data life cycle - share, data life cycle - plan
Resource type: Slides
Module also available as self-study material in data carpentry style
Scientific topics: Data management
Keywords: system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers
Resource type: course materials
Slides for the "Data protection, working with sensitive human data in research." session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data management, Data governance
Keywords: GDPR, data protection, sensitive data
[Data Stewardship Wizard](https://ds-wizard.org) brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...
Scientific topics: Data governance, Data management
Keywords: Data managment plan, data stewardship, data management, software tools
Resource type: Video, Slides, Webinar
This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but...
Scientific topics: Data management
Keywords: data management plan, data stewardship, FAIR, data management, software tools
Resource type: Video, Webinar
PDF with slides of the course in Spanish - Data management definitions - DMP Objectives - DMP Content and structure - Competencies needed - Practical session: DMP content analysis and evaluation
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, DMP tools, DMP templates, DMP evaluation, Data managment plan, research data management, FAIR principles, tools, template, competency, evaluation, online, e-learning, Spanish
Resource type: PDF, e-learning, slideck/ presentation
A relational database is made up of tables which are related to each other by shared keys. Different database management systems (DBMS) use slightly different vocabulary, but they are all based on the same ideas. It is useful to apply conventions when writing SQL queries to aid readability. Use...
This material is first targetting plant biologist willing to describe and annotate their phenotyping experiments before publication. Database managers and software developpers will also receive an introduction of the current plant phenotyping standards (MIAPPE, BrAPI, Crop ontology). Learners...
Scientific topics: Data management, Plant biology, Phenomics
Operations: Formatting, Annotation
Keywords: Plant Phenotyping, Data-format, data sharing
Resource type: Training materials
Materials from the ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, Sept 11, 2018 at ECCB2018, Athens, Greece.
Scientific topics: Data submission, annotation, and curation, Data management
Keywords: data management, data stewardship, eLearning, EeLP
Resource type: course materials, Training materials, Slides
Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Keywords: FAIR data
Resource type: Presentation
This training module will provide researcher with an introduction to SPARQL queries for health-related data.
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC
Resource type: Video, Training materials with mock data, E-learning
Writing a Data Management Plan A good data management plan is crucial for any scientist and researcher. In this course, you will learn how to write one. You will find out how you can prepare, handle and share your research data.
Scientific topics: Data management
Resource type: e-learning
There are no pre-requisites, and the materials assume no prior knowledge about the tools. The data for this workshop are is the Portal Project Teaching Database available on FigShare, with a CC-BY license available for reuse. The Portal Project Teaching Database is a simplified version of the...
This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
[Data Stewardship Wizard](ds-wizard.org) brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...
Scientific topics: Data management, Data governance
Keywords: Data management plan, data stewardship, FAIR, data management, software tools
Resource type: Video, Webinar, Slides
Four short training videos that introduce research data management and data management planning and how to get started with a DMP. In the last part we introduce CSC and ELIXIR services available for an example research group at different stages of their project.
Keywords: DMP, RDM, plan, research data management, data management, data management plan, ELIXIR-CONVERGE
Resource type: Series of videos, Video, youtube video
Welcome to Research Data Management Training for Information Professionals! This course will provide you with training on the research data management (RDM) topics listed below in a biomedical context. The material presented began as an NIH-funded research study to assess material for teaching...
Scientific topics: Data management
Resource type: e-learning
The main ambition of this workshop is that researchers will be able to handle their data in a more reproducible and efficient way. They should be able to retrieve, view, manipulate, process and manage their own and other one's data. The following topics will be covered during the workshop: ...
Slides for the "Data publishing and archival" session of the "Research Data Management and Stewardship Training" held on 14 June 2021 by ELIXIR-Luxembourg.
Keywords: Data publishing, data archiving, Data preserving
Resource type: Presentation
Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source
Keywords: Referencing data and code, Findability of data and code, Identifying data and code, data management
Resource type: Slides
Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
Slides from Data Management Planning workshop for Life Science Projects in Bergen 04 March 2020
Scientific topics: Data management
Operations: Data handling, Data retrieval, Deposition
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning workshop for Life Science Projects in Ås 11 March 2020
Scientific topics: Data management
Operations: Deposition, Data retrieval, Data handling
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning online workshop for Life Science Projects for researchers at NTNU 2020-12-01
Scientific topics: Data management
Operations: Data handling, Data retrieval, Deposition
Keywords: Data management plan, data management
Resource type: Slides
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Research Data Management and Data Management Plan
30 June - 1 July 2022
Bern or Lausanne, Switzerland
Research Data Management and Data Management Plan https://www.sib.swiss/training/course/20220630_RDMP https://tess.elixir-europe.org/events/research-data-management-and-data-management-plan Overview Recent studies have shown that worldwide, between 51% and 89% of published life sciences research is not reproducible, with consequent losses estimated at around $100 billions/year in biomedical research (Chalmers et al., 2009; Freedman 2022-06-30 09:00:00 UTC 2022-07-01 00:00:00 UTC SIB, Bern or Lausanne, Switzerland SIB Bern or Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Research Data Management and Data Management Plan
27 - 28 October 2022
Bern or Lausanne, Switzerland
Research Data Management and Data Management Plan https://www.sib.swiss/training/course/20221027_RDMP https://tess.elixir-europe.org/events/research-data-management-and-data-management-plan-feebe9bb-fbe8-4a5b-b317-77b82083ff31 Overview Recent studies have shown that worldwide, between 51% and 89% of published life sciences research is not reproducible, with consequent losses estimated at around $100 billions/year in biomedical research (Chalmers et al., 2009; Freedman 2022-10-27 09:00:00 UTC 2022-10-28 00:00:00 UTC SIB, Bern or Lausanne, Switzerland SIB Bern or Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] [] -
Introduction to Research Data Management
28 - 30 June 2022
Esch-sur-Alzette
Introduction to Research Data Management https://elixir-luxembourg.org/events/2022_06_27_research_data_management https://tess.elixir-europe.org/events/introduction-to-research-data-management-getting-started-with-data-management-and-data-stewardship This introductory course is aimed at starting PhD candidates, researchers and data stewards in the biomedical sciences who wish to acquire fundamental skills on data management. In addition to lectures, our workshop includes several hands-on practicals, all following one example research data management scenario. The course touches upon all stages of data research lifecycle with emphasis on data management planning, data protection and GDPR compliance, research analyses and reproducibility, FAIR principles and data publication. Please register via ELIXIR Luxembourg website: https://elixir-luxembourg.org/events/2022_06_27_research_data_management 2022-06-28 12:45:00 UTC 2022-06-30 12:15:00 UTC Luxembourg Centre for Systems Biomedicine LCSB BioCore meeting room, 4th floor, BTL Rouden Eck, 1 Boulevard du Jazz, 4370 Esch-sur-Alzette, Luxembourg, Esch-sur-Alzette LCSB BioCore meeting room, 4th floor, BTL Rouden Eck, 1 Boulevard du Jazz, 4370 Esch-sur-Alzette, Luxembourg Esch-sur-Alzette Luxembourg 4370 Luxembourg Centre for Systems Biomedicine vilem.ded@uni.lu [] PhD students workshops_and_courses first_come_first_served Data ProtectionReproducibilityDatastewardshipData management plandata publication -
Introduction to Data Management practices (preliminary)
11 - 14 October 2022
Introduction to Data Management practices (preliminary) Introduction https://tess.elixir-europe.org/events/introduction-to-data-management-practices-bb1e2519-bd04-4902-b6c6-ad5c345ff122 #training #url: Introduction to Data Management Practices National course open for PhD students, postdocs, researchers and other employees within all Swedish universities. The course is geared towards life scientists wanting to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. 2022-10-11 09:00:00 UTC 2022-10-14 00:00:00 UTC [] Niclas Jareborg - niclas.jareborg@scilifelab.se [] [] [] [] #trainingtraining -
[ONLINE] Data Management with iRODS and Compute @SURF
29 June 2022
[ONLINE] Data Management with iRODS and Compute @SURF https://events.prace-ri.eu/event/1392/ https://tess.elixir-europe.org/events/online-data-management-with-irods-and-compute-surf Would you want to practice reproducible research in HPC and preserve your data for the future? Research Data Management is essential in effective and reproducible science. Due to ever increasing data volumes and complexity, researchers need modern tools to manage all stages of the data life cycle. Here we will use iRODS, a data management framework, to incorporate data management principles in compute pipelines. What? In this course you will: - Learn about the the iRODS data management framework and icommands - Understand how to incorporate provenance in a compute workflow - Know about FAIR in data processing workflows Who? - Everyone interested in learning advanced data management tools for compute and data processing workflows Requirements - Basic knowledge of Linux and shell commands You should have - Your own laptop with an up-to-date browser and a terminal emulator. The use of the operating systems Linux and macOS is preferred, but not mandatory. For Windows users we recommend to download MobaXterm (portable version) as terminal emulator. IMPORTANT INFORMATION: WAITING LIST If the course gets fully booked, no more registrations are accepted through this website. However, you can be included in the waiting list: for that, please send an email to training@surfsara.nl and you'll be informed when a place becomes available. https://events.prace-ri.eu/event/1392/ 2022-06-29 07:00:00 UTC 2022-06-29 14:30:00 UTC [] [] [] workshops_and_courses [] [] -
"Ready for BioData Management?" Data Stewardship program for the life sciences
21 February - 31 October 2022
Oeiras, Portugal
"Ready for BioData Management?" Data Stewardship program for the life sciences https://biodata.pt/node/387 https://tess.elixir-europe.org/events/ready-for-biodata-management-data-stewardship-program-for-the-life-sciences BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations. It will unfold from February to October 2022, allowing trainees get some practice and consolidate the acquired knowledge. It will comprise an introductory module covering the basic concepts of Data Stewardship followed by two assignments and end with a hands-on course for knowledge consolidation. 2022-02-21 09:00:00 UTC 2022-10-31 17:00:00 UTC BioData.pt | ELIXIR Portugal Online and F2F (See details in training documentation), Oeiras, Portugal Online and F2F (See details in training documentation) Oeiras Portugal FAIR data Data submission, annotation, and curation Bioinformatics Data management Biodata.pt - Elixir's portuguese node of the european projec info@biodata.pt ELIXIR Life Science Researchers 24 workshops_and_courses registration_of_interest data managementData management plandata stewardshipdata annotationlife sciencestraining -
FAIR Data Management in Life Sciences - 2022 Course, 1st Edition by ELIXIR Norway
14 - 16 June 2022
FAIR Data Management in Life Sciences - 2022 Course, 1st Edition by ELIXIR Norway https://github.com/elixir-oslo/fair-dm-2022-course https://tess.elixir-europe.org/events/fair-data-management-in-life-sciences-2022-course-1st-edition-by-elixir-norway # FAIR Data Management in Life Sciences - 2022 Course, 1st Edition by ELIXIR Norway ## 14.-16. June, Virtual ### About The course aims to cover topics covering the whole data life cycle (as shown in the [Research Data Management kit by ELIXIR Europe](https://rdmkit.elixir-europe.org/)) with a specific focus on the implementation of [the FAIR data principles](https://www.go-fair.org/fair-principles/). The goal is to teach the key concepts on how to make life sciences data Findable, Accessible, Interoperable, and Reusable for your research management. For queries, check out [Frequently Asked Questions](https://github.com/elixir-oslo/fair-dm-2022-course/blob/main/faqs.md) and/or you can send mail to contact@bioinfo.no. ### Learning Objectives - To walk through data life cycle steps with an introduction to tools relevant to life sciences research, including in a context of computational analysis for life sciences. - To understand FAIR principles in the context of each data cycle step - To understand the data curation processes that enable data reuse and repurposing - To know the different RDM guidelines and practices used by the various RIs and institutions in Norway. ### Learning Outcomes: - To be able to define and connect RDM tasks within a domain of interest. - To be able to determine different tools that are available, globally and in Norway, to carry out RDM tasks. - To be able to identify metadata standards and to associate relevant deposition repositories - To be able to analyse and evaluate FAIRness of Data (and Management Plan) ### Learning Activities: Each session will include time for a short discussion including questions and answers. We plan to have a group activity on last day of the course that will involve reviewing and discussing how to create a FAIR DMP. In addition, we plan to include a short quiz relevant to each session; learners are recommended to take a quiz during or after the course to help revise and understand the content learned throughout the course. ### 👥 Target Audience The course is aimed at current and future life scientists in Norway. The target audience includes master’s students, PhD candidates, postdoctoral fellows, early-career researchers, and technical staff involved in scientific research in the life sciences in Norway. The course is particularly relevant for users and/or collaborators of the research infrastructures listed below: - [NorSeq: National consortium for sequencing and personalised medicine](https://www.norseq.org/) - [NOR-Openscreen: Consortium for chemical biology and early drug discovery](http://www.openscreen.no/) - [NORMOLIM: Norwegian Molecular Imaging Infrastructure](https://normolim.w.uib.no/) - [NALMIN: Norwegian Advanced Light Microscopy Imaging Network](https://nalmin.no/) - [NORCRYST: Norwegian Macromolecular Crystallography Consortium]( https://site.uit.no/norcryst/) - [BBMRI-NO: National research infrastructure for clinical and population-based biobanks](https://bbmri.no/) - [MoBa Genetics: Norwegian Mother, Father and Child Cohort Study](https://www.fhi.no/en/studies/moba/) - [GBIF Norway: The Norwegian node of the Global Biodiversity Information Facility](https://www.gbif.org/country/NO/summary) ### Course Schedule and Registration 🗓 [Click here to read the course schedule](https://github.com/elixir-oslo/fair-dm-2022-course/blob/main/schedule.md) ➡️ [Click here to register](https://nettskjema.no/a/fair-dm-2022) ### Organisers - Nazeefa Fatima, Centre for Bioinformatics, University of Oslo - Korbinian Bösl, University of Bergen - Federico Bianchini, Centre for Bioinformatics, University of Oslo ### Important Links - [ELIXIR-Norway website](https://elixir.no/) - [Read more about BioMedData](https://elixir.no/organization/biomeddata) - [ELIXIR-Norway Data Stewardship Wizard](https://elixir-no.ds-wizard.org/) - [End-User Course on FAIR Data Management for Life Sciences Research in Norway](https://zenodo.org/record/6104400#.YmFyjZNBxqs) - Deliverable report, available on Zenodo ## For queries, check out [Frequently Asked Questions](https://github.com/elixir-oslo/fair-dm-2022-course/blob/main/faqs.md) and/or you can send mail to the organisers at contact@bioinfo.no (use the course title as e-mail subject). 2022-06-14 09:00:00 UTC 2022-06-16 17:00:00 UTC Nazeefa Fatima, Korbinian Bösl, Federico Bianchini Data management [] contact@bioinfo.no [] All postgraduatesLife sciences meetings_and_conferencesworkshops_and_courses first_come_first_served DMPData management planRDMNeLSTSDsensitiveData ProtectionIdentifiersIdentifiersCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planstoragemetadatadata publication
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VBCF BioComp
BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer...
19 training materialsVBCF BioComp http://biocomp.vbcf.ac.at/training/index.html https://tess.elixir-europe.org/content_providers/vbcf-biocomp BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide custom-made data management solutions to research groups. BioComp offers trainings and consultations in the areas of bioinformatics, statistics and computational skills. /system/content_providers/images/000/000/045/original/biocomp.jpg?1469458450 -
FAIRDOM
Research Infrastructure supporting life scientists in managing their data and models FAIRly....
0 upcoming events (2 past events)FAIRDOM https://fair-dom.org/ https://tess.elixir-europe.org/content_providers/fairdom Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology. /system/content_providers/images/000/000/100/original/Screen_Shot_2018-09-06_at_15.54.17.png?1536245244 -
eNanoMapper
eNanoMapper developed a computational infrastructure for toxicological data management of...
10 training materialseNanoMapper http://enanomapper.net/ https://tess.elixir-europe.org/content_providers/enanomapper eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports the collaborative safety assessment for ENMs by creating a modular, extensible infrastructure for transparent data sharing, data analysis, and the creation of computational toxicology models for ENMs. eNanoMapper was funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no 604134. /system/content_providers/images/000/000/092/original/logo.png?1528313779 -
ELIXIR
Building a sustainable European infrastructure for biological information, supporting life...
5 training materials3 upcoming events (274 past events)ELIXIR https://www.elixir-europe.org/ https://tess.elixir-europe.org/content_providers/elixir Building a sustainable European infrastructure for biological information, supporting life science research and its translation to medicine, agriculture, bioindustries and society. ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the massive amounts of data being generated every day by publicly funded research. It is a pan-European research infrastructure for biological information. ELIXIR provides the facilities necessary for life science researchers - from bench biologists to cheminformaticians - to make the most of our rapidly growing store of information about living systems, which is the foundation on which our understanding of life is built. /system/content_providers/images/000/000/050/original/38675_web.jpg?1476092978 -
EMBL-ABR
EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research...
9 training materials0 upcoming events (193 past events)EMBL-ABR https://www.embl-abr.org.au/ https://tess.elixir-europe.org/content_providers/embl-abr EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics. /system/content_providers/images/000/000/072/original/embl-australia-logo-colour-FIN-e1462860151765.jpg?1488905402
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ELIXIR Structural Bioinformatics 3: Predicting the effect of mutation on protein function
This workflow builds on the previous training workflows in this series on building protein models and identifying functional domains or ligand binding sites - and introduces methods to predict how mutations can impact on protein function.
It is designed to lead you through the process of...
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ELIXIR Structural Bioinformatics 1: Getting a structure for a protein of interest
This training workflow is designed to lead you through the process of finding experimentally-determined structures for a protein you are interested in - or predicting structure information if one is not available.
It will then help guide you through visualising that structure as a prerequisite...
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ELIXIR Structural Bioinformatics 2: Exploring protein domains and functional sites
This training workflow introduces how to search (using query protein sequences or structures) for protein domains, conservation and protein family information, surface and topological interfaces, and possible ligand binding sites.
It is designed to lead you through the process of finding...
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Fork of ELIXIR Structural Bioinformatics 2: Exploring protein domains and functional sites
This training workflow introduces how to search (using query protein sequences or structures) for protein domains, conservation and protein family information, surface and topological interfaces, and possible ligand binding sites.
It is designed to lead you through the process of finding...