ELIXIR

Building a sustainable European infrastructure for biological information, supporting life science research and its translation to medicine, agriculture, bioindustries and society. ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the massive amounts of data being generated every day by publicly funded research. It is a pan-European research infrastructure for biological information. ELIXIR provides the facilities necessary for life science researchers - from bench biologists to cheminformaticians - to make the most of our rapidly growing store of information about living systems, which is the foundation on which our understanding of life is built.

ELIXIR https://tess.elixir-europe.org/content_providers/elixir Building a sustainable European infrastructure for biological information, supporting life science research and its translation to medicine, agriculture, bioindustries and society. ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the massive amounts of data being generated every day by publicly funded research. It is a pan-European research infrastructure for biological information. ELIXIR provides the facilities necessary for life science researchers - from bench biologists to cheminformaticians - to make the most of our rapidly growing store of information about living systems, which is the foundation on which our understanding of life is built. /system/content_providers/images/000/000/050/original/38675_web.jpg?1476092978
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- Produce an assembled genomes from read file(s). - Produce genomes with : --– the awaited length, – few errors (INDELs). - Use different software packages to produce the genomes. - Understand the command line structure and some of the parameters used by the assemblers. - Polish the genome...

Resource type: PDF

PacBio de novo genome assembly - Hands on exercise https://tess.elixir-europe.org/materials/pacbio-de-novo-genome-assembly-hands-on-exercise - Produce an assembled genomes from read file(s). - Produce genomes with : --– the awaited length, – few errors (INDELs). - Use different software packages to produce the genomes. - Understand the command line structure and some of the parameters used by the assemblers. - Polish the genome to have good quality sequence.

- News - PacBio read production and error patterns - Nanopore read production and error patterns - Assembly strategies - Assembly results - Conclusions

Resource type: PDF

Genome assembly with long reads https://tess.elixir-europe.org/materials/genome-assembly-with-long-reads - News - PacBio read production and error patterns - Nanopore read production and error patterns - Assembly strategies - Assembly results - Conclusions
Showing 16 upcoming events. Found 98 past events. View all results.
  • ELIXIR Webinar: WikiData

    20 June 2018

    ELIXIR Webinar: WikiData https://tess.elixir-europe.org/events/elixir-webinar-wikidata ELIXIR webinar on WikiData. More information will be available soon. 2018-06-20 14:00:00 UTC 2018-06-20 14:00:00 UTC [] [] [] [] []
  • 4th International Conference on Research Infrastructures - ICRI 2018

    12 - 14 September 2018

    Austria

    4th International Conference on Research Infrastructures - ICRI 2018 https://tess.elixir-europe.org/events/4th-international-conference-on-research-infrastructures-icri-2018 ICRI 2018 will be co-organised by the Austrian Federal Ministry of Science, Research and Economy (BMWFW) and the European Commission. Participants from more than 50 countries are expected to take part in this event. Speakers representing high-level stakeholders from across the globe and highly profiled institutions will intervene in the debate.   ICRI 2018 aims at:   ·      providing a forum for strategic discussion on international cooperation for research infrastructures at global level; ·      highlighting the essential role of research infrastructures in addressing global challenges and contributing to Sustainable Development Goals; ·      reflecting on the needs, development, and operation of global and national research infrastructures; ·      building on the outcomes of ICRI 2016, discussing existing and emerging challenges faced by RI stakeholders and investigating policy options and possible steps forward. The detailed programme for ICRI 2018 is currently being developed in cooperation with high- level international experts on research infrastructures.  Participation in ICRI 2018 will be possible by invitation only. A dedicated webpage for the conference will be available. You will receive a formal invitation, along with the Conference Programme and further information, from a dedicated functional mailbox within the coming months.   2018-09-12 09:00:00 UTC 2018-09-14 00:00:00 UTC Austria Austria [] [] meetings_and_conferences [] []
  • ELIXIR Board meeting (Tel Aviv)

    24 - 25 April 2018

    Tel Aviv, Israel

    ELIXIR Board meeting (Tel Aviv) https://tess.elixir-europe.org/events/elixir-board-meeting-tel-aviv The ELIXIR Board meeting takes place in Tel Aviv, Israel on 24 - 25 April 2018. This meeting is only open to the ELIXIR Board and Observers. Agenda items, location and venue will be confirmed to members in the near future.  Any inquiries about ELIXIR Board meetings event should be sent to info@elixir-europe.org. 2018-04-24 09:00:00 UTC 2018-04-25 00:00:00 UTC Tel Aviv, Israel Tel Aviv Israel [] [] meetings_and_conferences [] []
  • ISMB 2018

    6 - 10 July 2018

    United States of America

    ISMB 2018 https://tess.elixir-europe.org/events/ismb-2018 ELIXIR will became a sponsor.  ISMB brings together scientists from computer science, molecular biology, mathematics, statistics and related fields. Its principal focus is on the development and application of advanced computational methods for biological problems. ISMB 2018 provides an intense multidisciplinary forum for disseminating the latest developments in bioinformatics/computational biology, fostering fresh dialogues and perspectives to learn about and shape the future of the field. With intensified community involvement form the ISCB Communities of Special Interest (COSIs), ISMB is the leading conference in the field, with the strongest scientific and technical program that showcases the best international developments in bioinformatics and computational biology.   2018-07-06 09:00:00 UTC 2018-07-10 00:00:00 UTC United States of America United States of America [] [] meetings_and_conferences [] []
  • ELIXIR Webinar on the Sustainability Implementation Study

    16 May 2018

    ELIXIR Webinar on the Sustainability Implementation Study https://tess.elixir-europe.org/events/elixir-webinar-on-sustainability-implementation-study Representatives from ELIXIR Switzerland will present the outcomes of the ELIXIR Sustainability Implementation Study, focused on reviewing sustainable funding models for knowledge bases, with UniprotKB/Swiss-Prot as a specific use case. ELIXIR Webinars usually take place every third Wednesday of the month 15.00 CET and are open for anyone to join. Upcoming webinars. 2018-05-16 14:00:00 UTC 2018-05-16 15:00:00 UTC [] [] [] [] []
  • ELIXIR Webinar on the Proteome Implementation Study

    21 March 2018

    ELIXIR Webinar on the Proteome Implementation Study https://tess.elixir-europe.org/events/elixir-webinar-on-proteome-implementation-study Juan Antonio Vizcaino (EMBL-EBI) will present the outcomes from the Proteome Implementation Study, to develop robust and automated proteomics analysis pipelines that can be deployed in a cloud environment and be reused openly by the scientific community. ELIXIR Webinars usually take place every third Wednesday of the month 15.00 CET and are open for anyone to join. Upcoming webinars.     2018-03-21 14:00:00 UTC 2018-03-21 15:00:00 UTC [] [] [] [] []
  • ELIXIR Webinar on the Systems Implementation Study

    18 April 2018

    ELIXIR Webinar on the Systems Implementation Study https://tess.elixir-europe.org/events/elixir-webinar-on-systems-implementation-study Representatives from ELIXIR France will present the outcomes from the Systems Implementation Study to define the requirements for a European bioinformatics resource for microbial metabolism as well as providing a practical demonstration of how existing funded resources from ELIXIR partners could be integrated to meet those needs. ELIXIR Webinars usually take place every third Wednesday of the month 15.00 CET and are open for anyone to join. Upcoming webinars. 2018-04-18 14:00:00 UTC 2018-04-18 15:00:00 UTC [] [] [] [] []
  • ELIXIR Board meeting (Ljubljana)

    12 - 13 November 2018

    Ljubljana, Slovenia

    ELIXIR Board meeting (Ljubljana) https://tess.elixir-europe.org/events/elixir-board-meeting-ljubljana The ELIXIR Board meeting takes place in Ljubljana, Slovenia on 12 - 13 November 2018. This meeting is only open to the ELIXIR Board and Observers. Agenda items, location and venue will be confirmed to members in the near future.  Any inquiries about ELIXIR Board meetings event should be sent to info@elixir-europe.org. 2018-11-12 09:00:00 UTC 2018-11-13 00:00:00 UTC Ljubljana, Slovenia Ljubljana Slovenia [] [] meetings_and_conferences [] []
  • ELIXIR Webinar on the Equal Opportunities Policy

    14 March 2018

    ELIXIR Webinar on the Equal Opportunities Policy https://tess.elixir-europe.org/events/elixir-webinar-on-the-equal-opportunities-policy Catherine Gater (European Bioinformatics Institute (EMBL-EBI)) will present the newly created Equal Opportunities Policy. The policy will cover: ELIXIR structure Institutional Equal Opportunity Policies Recruitment Terms and Conditions Committees and governance Training and events Charter and Code of Access Data, reporting and monitoring Collaborations Equal Opportunities Toolkit ELIXIR Webinars usually take place every third Wednesday of the month 15.00 CET and are open for anyone to join. Upcoming webinars.   2018-03-14 14:00:00 UTC 2018-03-14 14:00:00 UTC [] [] [] [] []
  • ELIXIR All Hands 2018

    4 - 7 June 2018

    Germany

    ELIXIR All Hands 2018 https://tess.elixir-europe.org/events/elixir-all-hands-2018 The fourth ELIXIR All Hands meeting will take place 4 -7 June 2018, bringing together members of the ELIXIR community from across the ELIXIR Nodes, and collaborators from partner organisations, in order to review ELIXIR achievements and activities so far and discuss plans for the future. The All Hands also acts as the ELIXIR-EXCELERATE Annual General Meeting.    2018-06-04 09:00:00 UTC 2018-06-07 00:00:00 UTC Hotel Berlin Berlin, Germany Hotel Berlin Berlin Germany [] [] meetings_and_conferences [] []
  • ELIXIR Webinar: ELIXIR AAI and de.nbi

    7 March 2018

    ELIXIR Webinar: ELIXIR AAI and de.nbi https://tess.elixir-europe.org/events/elixir-webinar-elixir-aai-and-de-nbi Futher details to follow. 2018-03-07 14:00:00 UTC 2018-03-07 14:00:00 UTC [] [] [] [] []
  • ELIXIR Board meeting (Bergen)

    15 - 16 April 2019

    Bergen, Norway

    ELIXIR Board meeting (Bergen) https://tess.elixir-europe.org/events/elixir-board-meeting-bergen The ELIXIR Board meeting takes place in Bergen, Norway on 15 - 16 April 2019. This meeting is only open to the ELIXIR Board and Observers. Agenda items, location and venue will be confirmed to members in the near future.  Any inquiries about ELIXIR Board meetings event should be sent to info@elixir-europe.org. 2019-04-15 09:00:00 UTC 2019-04-16 00:00:00 UTC Bergen, Norway Bergen Norway [] [] meetings_and_conferences [] []
  • ELIXIR Webinar on the Systems Biology Implementation Study

    18 April 2018

    ELIXIR Webinar on the Systems Biology Implementation Study https://tess.elixir-europe.org/events/elixir-webinar-on-the-systems-biology-implementation-study Representatives from ELIXIR France will present the outcomes from the Systems Biology Implementation Study to define the requirements for a European bioinformatics resource for microbial metabolism as well as providing a practical demonstration of how existing funded resources from ELIXIR partners could be integrated to meet those needs. ELIXIR Webinars usually take place every third Wednesday of the month 15.00 CET and are open for anyone to join. Upcoming webinars. 2018-04-18 14:00:00 UTC 2018-04-18 15:00:00 UTC [] [] [] [] []
  • European Conference on Computational Biology (ECCB) 2018

    8 - 12 September 2018

    Greece

    European Conference on Computational Biology (ECCB) 2018 https://tess.elixir-europe.org/events/european-conference-on-computational-biology-eccb-2018 On 8-12 September 2018 the Hellenic Society for Computational Biology and Bioinformatics will organise the seventeenth edition of the European Conference on Computational Biology in association with the ELIXIR. The ECCB 2018 will take place in the historic city of Athens in Greece. It is the main computational biology event in Europe and will welcome scientists working in a variety of disciplines, including bioinformatics, computational biology, biology, medicine, and systems biology. Participating in ECCB 2018 will be the perfect opportunity to keep pace with cutting edge research, and to network with members of ECCB community. ELIXIR will became the sponsor. 2018-09-08 09:00:00 UTC 2018-09-12 00:00:00 UTC Greece Greece [] [] meetings_and_conferences [] []
  • Galaxy community kickoff meeting and Galaxy User Conference

    14 - 16 March 2018

    Germany

    Galaxy community kickoff meeting and Galaxy User Conference https://tess.elixir-europe.org/events/galaxy-community-kickoff-meeting-and-galaxy-user-conference The ELIXIR Galaxy community will have a kickoff meeting in 14-16th March 2018, in Freiburg/Germany. We will combine this with a Galaxy User Conference and the official launch of the usegalaxy.eu server. This event will also be coordinated with the EMBL in Australia to also launch usegalaxy.au at the same time. The Wednesday (14th) will be dedicated to the ELIXIR Galaxy communtiy, to discuss and plan our roadmap in 2018 and 2019. Thursday and Friday (15th, 16th) will be a conference where Galaxy users talk about their research and use-cases. However, a few spots we will reserved for official talks from ELIXIR. Please register here: https://goo.gl/forms/FD5ciO8RiBvtFVoD3. See you all in Freiburg! 2018-03-14 08:00:00 UTC 2018-03-16 18:00:00 UTC Otto-Krayer-Haus, Germany Otto-Krayer-Haus Germany 79110 [] [] meetings_and_conferences [] []
  • ELIXIR Webinar: de.NBI Cloud Integration to ELIXIR AAI

    7 March 2018

    ELIXIR Webinar: de.NBI Cloud Integration to ELIXIR AAI https://tess.elixir-europe.org/events/elixir-webinar-de-nbi-cloud-integration-to-elixir-aai The de.NBI cloud is a fully academic cloud infrastructure, free of charge for academic users, where currently five cloud centers provide compute and storage resources. During 2017, de.NBI was integrated into ELIXIR AAI which acts as a backbone for the connection of the five compute centers and allows users to manage cloud projects and access the cloud infrastructure using the authentication service of their home institutions. In this webinar, Peter Belmann (de.NBI cloud governance) will present how de.NBI makes use of ELIXIR AAI and demonstrate how a potential user logs in to the portal, applies for and manages his project, and finally starts using the assigned resources in the cloud. Michal Prochazka of ELIXIR-CZ will complement Peter’s presentation by describing how the integration was done on the ELIXIR AAI side.   2018-03-07 14:00:00 UTC 2018-03-07 14:00:00 UTC [] [] [] [] []
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