PacBio de novo genome assembly - Hands on exercise

  • Produce an assembled genomes from read file(s).
  • Produce genomes with : --– the awaited length, – few errors (INDELs).
  • Use different software packages to produce the genomes.
  • Understand the command line structure and some of the parameters used by the assemblers.
  • Polish the genome to have good quality sequence.

Resource type: PDF

Authors: Christophe Klopp

PacBio de novo genome assembly - Hands on exercise https://tess.elixir-europe.org/materials/pacbio-de-novo-genome-assembly-hands-on-exercise - Produce an assembled genomes from read file(s). - Produce genomes with : --– the awaited length, – few errors (INDELs). - Use different software packages to produce the genomes. - Understand the command line structure and some of the parameters used by the assemblers. - Polish the genome to have good quality sequence.
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