VBCF BioComp

BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide custom-made data management solutions to research groups. BioComp offers trainings and consultations in the areas of bioinformatics, statistics and computational skills.

VBCF BioComp https://tess.elixir-europe.org/content_providers/vbcf-biocomp BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide custom-made data management solutions to research groups. BioComp offers trainings and consultations in the areas of bioinformatics, statistics and computational skills. /system/content_providers/images/000/000/045/original/biocomp.jpg?1469458450
Showing 19 materials.
UNIX command line

This course introduces the UNIX command line on a Linux or Mac. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

UNIX command line https://tess.elixir-europe.org/materials/unix-command-line-and-scripting-d6803e90-5f26-40e2-98cd-6128b0d7485d This course introduces the UNIX command line on a Linux or Mac. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters. 2017-10-09
Scientific writing

The title says it all: we teach the participants how to write good scientific texts.

Scientific writing https://tess.elixir-europe.org/materials/scientific-writing The title says it all: we teach the participants how to write good scientific texts. 2017-10-09
Grant writing workshop

The title says it all: we teach the participants how to write good grant applications. If you are a PhD student in your final year, a postdoc or a group leader, then you will profit a lot from this practical workshop.

Grant writing workshop https://tess.elixir-europe.org/materials/grant-writing-workshop The title says it all: we teach the participants how to write good grant applications. If you are a PhD student in your final year, a postdoc or a group leader, then you will profit a lot from this practical workshop. 2016-05-12
Scientific data visualisation

The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style.

Scientific data visualisation https://tess.elixir-europe.org/materials/scientific-data-visualisation The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style. 2016-05-12
Scientific data visualisation

The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style.

Scientific data visualisation https://tess.elixir-europe.org/materials/scientific-data-visualisation-3174df43-1ffe-479d-9c9b-5810b8a4e37a The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style. 2017-03-27
Linear regression with R

The aim of this course is to teach you how to fit linear models to your data using R. We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge. Please note that we cannot go into the specific data analysis problems of your...

Linear regression with R https://tess.elixir-europe.org/materials/linear-models-with-r The aim of this course is to teach you how to fit linear models to your data using R. We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge. Please note that we cannot go into the specific data analysis problems of your particular project. 2017-10-09
Life Science Figure Design

The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style.

Life Science Figure Design https://tess.elixir-europe.org/materials/life-science-figure-design The purpose of this course is to familiarise participants with the principles of graphic design. They will learn how to faithfully represent data in figures and improve their own data presentation style. 2017-10-09
GMI "Mendel" cluster introduction

This course provides an introduction to the GMI high-performance computing cluster "Mendel".

GMI "Mendel" cluster introduction https://tess.elixir-europe.org/materials/gmi-mendel-cluster-introduction This course provides an introduction to the GMI high-performance computing cluster "Mendel". 2017-10-09
R as a programming language

This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts.

R as a programming language https://tess.elixir-europe.org/materials/r-as-a-programming-language-401a3243-45a4-40cc-9b88-265cc4ce80cc This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts. 2017-10-09
Machine learning methods

The aim of this course is to help computational biologists with complex data analysis problems. After discussing the theoretical foundations, the course will provide practical advice on how to use selected machine learning methodogies with R.

Machine learning methods https://tess.elixir-europe.org/materials/machine-learning-methods The aim of this course is to help computational biologists with complex data analysis problems. After discussing the theoretical foundations, the course will provide practical advice on how to use selected machine learning methodogies with R. 2017-10-09
Statistics with R

The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge. We...

Statistics with R https://tess.elixir-europe.org/materials/statistics-with-r-70bbe42a-0729-4f11-b2e8-7cf281e74533 The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge. We cannot go into the specific data analysis problems of your particular project. 2017-10-09
Advanced plotting with ggplot in R

The aim of this course is to teach you how to create informative scientific plots using the ggplot package in R.

Advanced plotting with ggplot in R https://tess.elixir-europe.org/materials/advanced-plotting-with-ggplot-in-r The aim of this course is to teach you how to create informative scientific plots using the ggplot package in R.
ANOVA with R

The aim of this short course is to explain why we have to analyse variances if we want to compare group means using ANOVA techniques. This lecture may be included in the Linear regression with R course. Please note that we cannot go into the specific data analysis problems of your particular...

ANOVA with R https://tess.elixir-europe.org/materials/anova-with-r The aim of this short course is to explain why we have to analyse variances if we want to compare group means using ANOVA techniques. This lecture may be included in the Linear regression with R course. Please note that we cannot go into the specific data analysis problems of your particular project.
Advanced regression methods

The aim of this course is to help computational biologists with complex data analysis problems. After discussing the theoretical foundations, the course will provide practical advice on how to use the presented methodogies with R.

Advanced regression methods https://tess.elixir-europe.org/materials/advanced-regression-methods The aim of this course is to help computational biologists with complex data analysis problems. After discussing the theoretical foundations, the course will provide practical advice on how to use the presented methodogies with R. 2017-10-09
RNA-Seq data analysis

The aim of the course is to familiarise experimental biologists with how bioinformaticians analyse RNA-Seq data. The statistical background will be explained in easy-to-understand terms with practical examples. This course is recommended to colleagues who are planning to do RNA-Seq...

RNA-Seq data analysis https://tess.elixir-europe.org/materials/rna-seq-data-analysis The aim of the course is to familiarise experimental biologists with how bioinformaticians analyse RNA-Seq data. The statistical background will be explained in easy-to-understand terms with practical examples. This course is recommended to colleagues who are planning to do RNA-Seq experiments and want to understand better what happens to their raw data in the bioinformatician's hands. 2017-10-09
IMP/IMBA HPC cluster introduction

This course provides an introduction to the IMP/IMBA high-performance computing cluster.

IMP/IMBA HPC cluster introduction https://tess.elixir-europe.org/materials/imp-imba-hpc-cluster-introduction This course provides an introduction to the IMP/IMBA high-performance computing cluster. 2017-10-09
AWK and BASH scripting

This course introduces scripting with AWK and BASH. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

AWK and BASH scripting https://tess.elixir-europe.org/materials/awk-and-bash-scripting This course introduces scripting with AWK and BASH. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
Regular expressions

This course introduces regular expressions and how to search for text patterns in a number of programming languages (UNIX command line, R, Python etc.). It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

Regular expressions https://tess.elixir-europe.org/materials/regular-expressions This course introduces regular expressions and how to search for text patterns in a number of programming languages (UNIX command line, R, Python etc.). It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
Python programming primer

The purpose of this training is to teach general programming concepts using Python as an instruction tool.

Python programming primer https://tess.elixir-europe.org/materials/python-programming-primer-dd4b3b9e-a5cb-4a94-88bb-24eeeff92f27 The purpose of this training is to teach general programming concepts using Python as an instruction tool. 2017-10-09
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