EMBL-ABR

EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics.

Showing 9 materials.

From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other...

Scientific topics: Data types and objects, Data management

Keywords: bioinformatics, data

EMBL-ABR Best Practice workshop series: the data life-cycle https://tess.elixir-europe.org/materials/embl-abr-best-practice-workshop-series-the-data-life-cycle From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other scientists, research assistants and research data managers. Jyoti Khadake Sandra Orchard Dan Bolser Suzanna Lewis Data types and objects Data management bioinformatics, data Biologists bioinformaticians

This workshop will provide an introduction to existing solutions and methods for registries across a variety of areas relevant to bioinformatics, such as tools, datasets, standards, events and training.

Keywords: bioinformatics

EMBL-ABR/ELIXIR/CyVerse workshop: Registries in Bioinformatics https://tess.elixir-europe.org/materials/embl-abr-elixir-cyverse-workshop-registries-in-bioinformatics This workshop will provide an introduction to existing solutions and methods for registries across a variety of areas relevant to bioinformatics, such as tools, datasets, standards, events and training. Rafael C Jimenez Jason Williams Sonika Tyagi bioinformatics bioinformaticians

This workshop will provide an interactive forum to discuss, review and gain an overview of Open Source and Software Development and will be based on content from the ELIXIR Software Development Best Practices group and aims to explore how to harmonise EMBL-ABR efforts in this area

Keywords: bioinformatics

EMBL-ABR workshop on Open Source and Software Development Best Practice https://tess.elixir-europe.org/materials/embl-abr-workshop-on-open-source-and-software-development-best-practice This workshop will provide an interactive forum to discuss, review and gain an overview of Open Source and Software Development and will be based on content from the ELIXIR Software Development Best Practices group and aims to explore how to harmonise EMBL-ABR efforts in this area Rafael C Jimenez Jason Williams bioinformatics software developers, bioinformaticians

This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes.

Keywords: bioinformatics

Researcher Training Day for Life Scientists_ Rad-seq with Stacks in Galaxy https://tess.elixir-europe.org/materials/researcher-training-day-for-life-scientists_-rad-seq-with-stacks-in-galaxy This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes. Pip Griffin Sonika Tyagi bioinformatics Biologists

Basic Introduction to Galaxy

Keywords: bioinformatics

Introduction to Galaxy https://tess.elixir-europe.org/materials/introduction-to-galaxy Basic Introduction to Galaxy Vicky Schneider bioinformatics Biologists

GenomeSpace is a cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface. GenomeSpace provides access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to leverage the available analyses...

Keywords: bioinformatics, GVL

What is GenomeSpace? https://tess.elixir-europe.org/materials/what-is-genomespace GenomeSpace is a cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface. GenomeSpace provides access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to leverage the available analyses and visualizations in each of them. The tools retain their native look and feel, with GenomeSpace providing frictionless conduits between them through a lightweight interoperability layer. Vicky Schneider bioinformatics, GVL Biologists

This workshop/tutorial will familiarise you with the Galaxy workflow engine. It will cover the following topics: Logging in to the server How to construct and use a workflow by various methods How to share a workflow

Scientific topics: Workflows

Keywords: bioinformatics

Galaxy workflows https://tess.elixir-europe.org/materials/galaxy-workflows This workshop/tutorial will familiarise you with the Galaxy workflow engine. It will cover the following topics: Logging in to the server How to construct and use a workflow by various methods How to share a workflow Vicky Schneider Workflows bioinformatics Biologists

Introduction to Python

Keywords: bioinformatics, Australia

Python Overview https://tess.elixir-europe.org/materials/python-overview Introduction to Python Vicky Schneider bioinformatics, Australia Biologists

This course covers: Sequencing technologies Applications Categories of analysis Sample preparation Potential services in NGS Appendix

Scientific topics: High-throughput sequencing, Sequencing

Keywords: bioinformatics, Australia

NGS overview https://tess.elixir-europe.org/materials/ngs-overview This course covers: Sequencing technologies Applications Categories of analysis Sample preparation Potential services in NGS Appendix Vicky Schneider High-throughput sequencing Sequencing bioinformatics, Australia Biologists
Showing 8 upcoming events. Found 11 past events. View all results.
  • Open source science with Monica Munoz-Torres

    28 Jun 2017

    University of Melbourne, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science 2017-06-28 09:00:00 UTC 2017-06-28 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia
  • Genome Annotation with Monica Munoz-Torres

    27 Jun 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia
  • Open source science with Monica Munoz-Torres

    30 Jun 2017

    Hobart, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres 2017-06-30 09:00:00 UTC 2017-06-30 12:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart Hobart Australia
  • Genome Annotation with Monica Munoz-Torres

    29 Jun 2017

    Hobart, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-d4d8d495-d20f-464e-9c28-1b6fcd88814b 2017-06-29 09:00:00 UTC 2017-06-29 17:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania Hobart Australia
  • Genome Annotation with Monica Munoz-Torres

    03 Jul - 10 May 2017

    James Cook University, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-e0429e7a-0897-4426-bb63-1136a2131375 2017-07-03 09:00:00 UTC 2017-05-10 17:00:00 UTC James Cook University Room 034-011C, James Cook University, Townsville Campus, James Cook University, Australia Room 034-011C, James Cook University, Townsville Campus James Cook University Australia
  • Genome Annotation with Monica Munoz-Torres

    12 Jul 2017

    The University of Queensland, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-9ecb2f55-2050-4e45-9349-69a2ab8676f3 2017-07-12 09:00:00 UTC 2017-07-12 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct The University of Queensland Australia
  • Open source science with Monica Munoz-Torres

    13 Jul 2017

    The University of Queensland, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres-79282d2b-864b-492c-93a0-3c5b57cbec95 2017-07-13 13:00:00 UTC 2017-07-13 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia , The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia The University of Queensland Australia
  • Genome Annotation with Monica Munoz-Torres

    17 Jul 2017

    Nedlands, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-de406051-7f73-4596-9937-e4489eff43f9 2017-07-17 09:00:00 UTC 2017-07-17 17:00:00 UTC Australian Genome Research Facility Harry Perkins Institute of Medical Research, 6 Verdun St, Nedlands, Australia Harry Perkins Institute of Medical Research, 6 Verdun St Nedlands Perth, Western Australia Australia
vicky created EMBL-ABR at 2017-03-07 16:50:05 UTC.