EMBL-ABR

EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics.

EMBL-ABR https://tess.elixir-europe.org/content_providers/embl-abr EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics. /system/content_providers/images/000/000/072/original/embl-australia-logo-colour-FIN-e1462860151765.jpg?1488905402
Showing 9 materials.

This course covers: Sequencing technologies Applications Categories of analysis Sample preparation Potential services in NGS Appendix

Scientific topics: Sequencing, High-throughput sequencing

Keywords: bioinformatics, Australia

NGS overview https://tess.elixir-europe.org/materials/ngs-overview This course covers: Sequencing technologies Applications Categories of analysis Sample preparation Potential services in NGS Appendix Vicky Schneider Sequencing High-throughput sequencing bioinformatics, Australia Biologists

Introduction to Python

Keywords: bioinformatics, Australia

Python Overview https://tess.elixir-europe.org/materials/python-overview Introduction to Python Vicky Schneider bioinformatics, Australia Biologists

This workshop/tutorial will familiarise you with the Galaxy workflow engine. It will cover the following topics: Logging in to the server How to construct and use a workflow by various methods How to share a workflow

Scientific topics: Workflows

Keywords: bioinformatics

Galaxy workflows https://tess.elixir-europe.org/materials/galaxy-workflows This workshop/tutorial will familiarise you with the Galaxy workflow engine. It will cover the following topics: Logging in to the server How to construct and use a workflow by various methods How to share a workflow Vicky Schneider Workflows bioinformatics Biologists

GenomeSpace is a cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface. GenomeSpace provides access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to leverage the available analyses...

Keywords: bioinformatics, GVL

What is GenomeSpace? https://tess.elixir-europe.org/materials/what-is-genomespace GenomeSpace is a cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface. GenomeSpace provides access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to leverage the available analyses and visualizations in each of them. The tools retain their native look and feel, with GenomeSpace providing frictionless conduits between them through a lightweight interoperability layer. Vicky Schneider bioinformatics, GVL Biologists

Basic Introduction to Galaxy

Keywords: bioinformatics

Introduction to Galaxy https://tess.elixir-europe.org/materials/introduction-to-galaxy Basic Introduction to Galaxy Vicky Schneider bioinformatics Biologists

This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes.

Keywords: bioinformatics

Researcher Training Day for Life Scientists_ Rad-seq with Stacks in Galaxy https://tess.elixir-europe.org/materials/researcher-training-day-for-life-scientists_-rad-seq-with-stacks-in-galaxy This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes. Pip Griffin Sonika Tyagi bioinformatics Biologists

This workshop will provide an interactive forum to discuss, review and gain an overview of Open Source and Software Development and will be based on content from the ELIXIR Software Development Best Practices group and aims to explore how to harmonise EMBL-ABR efforts in this area

Scientific topics: Software engineering

Keywords: bioinformatics

EMBL-ABR workshop on Open Source and Software Development Best Practice https://tess.elixir-europe.org/materials/embl-abr-workshop-on-open-source-and-software-development-best-practice This workshop will provide an interactive forum to discuss, review and gain an overview of Open Source and Software Development and will be based on content from the ELIXIR Software Development Best Practices group and aims to explore how to harmonise EMBL-ABR efforts in this area Rafael C Jimenez Jason Williams Software engineering bioinformatics software developers, bioinformaticians

This workshop will provide an introduction to existing solutions and methods for registries across a variety of areas relevant to bioinformatics, such as tools, datasets, standards, events and training.

Keywords: bioinformatics

EMBL-ABR/ELIXIR/CyVerse workshop: Registries in Bioinformatics https://tess.elixir-europe.org/materials/embl-abr-elixir-cyverse-workshop-registries-in-bioinformatics This workshop will provide an introduction to existing solutions and methods for registries across a variety of areas relevant to bioinformatics, such as tools, datasets, standards, events and training. Rafael C Jimenez Jason Williams Sonika Tyagi bioinformatics bioinformaticians

From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other...

Scientific topics: Data types and objects, Data management

Keywords: bioinformatics, data

EMBL-ABR Best Practice workshop series: the data life-cycle https://tess.elixir-europe.org/materials/embl-abr-best-practice-workshop-series-the-data-life-cycle From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other scientists, research assistants and research data managers. Jyoti Khadake Sandra Orchard Dan Bolser Suzanna Lewis Data types and objects Data management bioinformatics, data Biologists bioinformaticians
Showing 16 upcoming events. Found 113 past events. View all results.
  • Introduction to Unix

    15 October 2018

    Melbourne, Australia

    Introduction to Unix https://tess.elixir-europe.org/events/introduction-to-unix-a2c1f5ab-fc0b-420c-9c91-82798005ff20 2018-10-15 09:30:00 UTC 2018-10-15 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsUnix
  • Introduction to High Performance Computing

    15 October 2018

    Melbourne, Australia

    Introduction to High Performance Computing https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-3be3f197-c7f9-45d0-8728-dea417d57580 2018-10-15 02:30:00 UTC 2018-10-15 05:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsHPC
  • Introduction to Galaxy Australia: RNA-seq (JCU-Townsville Campus)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (JCU-Townsville Campus) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-jcu-townsville-campus 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Building 2, Room 001, James Cook University (Townsville Campus), 1 James Cook Drive, Douglas, , Queensland, Australia Building 2, Room 001, James Cook University (Townsville Campus), 1 James Cook Drive, Douglas, Queensland Australia 4354 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxyQuality Assurance
  • Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-jcu-cairns-campus 2018-10-23 01:00:00 UTC 2018-10-23 05:00:00 UTC EMBL-ABR Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield, Queensland, Australia Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield Queensland Australia 4878 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Containerised Bioinformatics: Docker and other tools for reproducible analysis

    29 October 2018

    Melbourne, Australia

    Containerised Bioinformatics: Docker and other tools for reproducible analysis https://tess.elixir-europe.org/events/containerised-bioinformatics-docker-and-other-tools-for-reproducible-analysis-8ea6f943-f007-425b-8c78-2216438b214a 2018-10-29 01:30:00 UTC 2018-10-29 04:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsDocker
  • Introduction to EBI tools

    29 October 2018

    Melbourne, Australia

    Introduction to EBI tools https://tess.elixir-europe.org/events/introduction-to-ebi-tools-163766d3-3d00-4d3b-81c7-d556baa8804f 2018-10-29 09:30:00 UTC 2018-10-29 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformatics
  • Introduction to long-read genome assembly

    31 October 2018

    Melbourne, Australia

    Introduction to long-read genome assembly https://tess.elixir-europe.org/events/introduction-to-long-read-genome-assembly-14f2b54a-287c-4120-ab24-19fee823d469 2018-10-31 09:30:00 UTC 2018-10-31 13:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformatics
  • Australian Bioinformatics and Computational Biology Society National Conference

    27 - 28 November 2018

    Parkville, Australia

    Australian Bioinformatics and Computational Biology Society National Conference https://tess.elixir-europe.org/events/australian-bioinformatics-and-computational-biology-society-national-conference 2018-11-27 09:00:00 UTC 2018-11-28 17:00:00 UTC ABACBS University of Melbourne, Parkville, Australia University of Melbourne Parkville Melbourne Australia Computational biology Bioinformatics University of Melbourne [] [] [] [] bioinformaticsComputationalBiology
  • Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-melbourne-bioinformatics 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Clayton)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-clayton 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash Malaysia)

    23 October 2018

    Bandar Sunway, Malaysia

    Introduction to Galaxy Australia: RNA-seq (Monash Malaysia) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-malaysia 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Room 2-3-41, Monash University, Bandar Sunway, Bandar Sunway, Malaysia Room 2-3-41, Monash University, Bandar Sunway Bandar Sunway Malaysia Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxyRNA-seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Hudson)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-hudson 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton, Melbourne, Australia Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (QCIF - UQ)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (QCIF - UQ) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-qcif-uq 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR RCC Meeting Room, Room 505, Level 5, Axon Building, Building 47, University of Queensland, St Lucia, Queensland, Australia RCC Meeting Room, Room 505, Level 5, Axon Building, Building 47, University of Queensland, St Lucia Queensland Australia 4067 Bioinformatics University of Queensland [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Introduction to Galaxy Australia: RNA-seq (QCIF-USQ)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (QCIF-USQ) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-qcif-usq 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR C305 Collaborative Tutorial Room (C Building), West Street, University of Southern Queensland, Toowoomba, Queensland, Australia C305 Collaborative Tutorial Room (C Building), West Street, University of Southern Queensland, Toowoomba Queensland Australia 4350 Bioinformatics University of Southern Queensland [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Introduction to Galaxy Australia: RNA-seq (Sydney Informatics Hub)

    23 October 2018

    New South Wales , Australia

    Introduction to Galaxy Australia: RNA-seq (Sydney Informatics Hub) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-sydney-informatics-hub 2018-10-23 02:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Seminar Room 437, Old Teacher’s College (A22), University of Sydney, Manning Road, Camperdown, New South Wales , Australia Seminar Room 437, Old Teacher’s College (A22), University of Sydney, Manning Road, Camperdown New South Wales Australia 2006 Bioinformatics The University of Sydney [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (University of Adelaide)

    23 October 2018

    Adelaide, Australia

    Introduction to Galaxy Australia: RNA-seq (University of Adelaide) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-university-of-adelaide 2018-10-23 01:30:00 UTC 2018-10-23 16:30:00 UTC EMBL-ABR Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide, Adelaide, Australia Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide Adelaide Australia 5000 Bioinformatics University of Adelaide [] [] [] [] bioinformatics RNA-SeqGalaxy
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