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Face-to-face

Workshops and courses

From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

30 June - 4 July 2025

Freiburg, Germany

Face-to-face
Metagenomics Microbial ecology Taxonomy Sequence analysis Public health and epidemiology Sequence assembly Pathology introduction microbiome sequence-analysis single-cell transcriptomics
Online

Workshops and courses

Learning Pathway Introductory Python

No date given

Online
data-science python real-course
Online

Workshops and courses

Learning Pathway Detection of AMR genes in bacterial genomes

No date given

Online
Whole genome sequencing Genomics Microbiology Microbial ecology Sequence assembly Public health and epidemiology Antimicrobial resistance Gene and protein families Sequence analysis Functional genomics Mobile genetic elements Infectious disease Metagenomics Taxonomy Pathology amr bacteria microbiome microgalaxy one-health
Online

Workshops and courses

Learning Pathway Bacterial comparative genomics

No date given

Online
Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Public health and epidemiology Infectious disease Antimicrobial resistance Phylogeny bacteria comparative genomics microgalaxy pangenome phylogeny
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Ecological data analysis

No date given

Online
Ecology beginner ecology
Online

Workshops and courses

Learning Pathway From R to Machine Learning; an introductory course

No date given

Online
beginner data-science statistics
Online

Workshops and courses

Learning Pathway Onboarding for new contributors

No date given

Online
cofest contributing introduction
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

No date given

Online
Mapping beginner contributing data-science sequence-analysis transcriptomics
Online

Workshops and courses

Learning Pathway Proteogenomics

No date given

Online
beginner proteomics
Online

Workshops and courses

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

No date given

Online
advanced single-cell
Online

Workshops and courses

Learning Pathway Admin Training Course

No date given

Online
Database management Informatics Data management 5-day course Galaxy administrators admin
Online

Workshops and courses

Learning Pathway Genome annotation for eukaryotes

No date given

Online
Sequence composition, complexity and repeats Genomics Gene and protein families eukaryote genome-annotation
Online

Workshops and courses

Learning Pathway Introduction to Data Driven Life Sciences

No date given

Online
data-science introduction real-course
Online

Workshops and courses

Learning Pathway Building training material in Galaxy

No date given

Online
contributing
Online

Workshops and courses

Learning Pathway Discovering Galaxy through climate analysis

No date given

Online
climate
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

No date given

Online
Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Public health and epidemiology Sequence assembly Pathology beginner data-science galaxy-interface microbiome variant-analysis visualisation
Online

Workshops and courses

Learning Pathway Artificial Intelligence and Machine Learning in Life Sciences using Python

No date given

Online
ai elixir ml
Online

Workshops and courses

Learning Pathway Train the Trainers

No date given

Online
community teaching trainers training
Online

Workshops and courses

Learning Pathway Tool development for a nice & shiny subdomain

No date given

Online
3-day course community dev subdomain tool development
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

No date given

Online
beginner single-cell
Online

Workshops and courses

Learning Pathway Introductory SQL

No date given

Online
data-science python real-course
Online

Workshops and courses

Learning Pathway FAIR Data Management

No date given

Online
data management data stewardship dmp fair
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

No date given

Online
Ecology beginner ecology
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Sequence analysis

No date given

Online
Mapping assembly beginner introduction sequence-analysis
Online

Workshops and courses

Learning Pathway Machine learning

No date given

Online
beginner machine learning
Online

Workshops and courses

Learning Pathway Metagenomics data processing and analysis for microbiome

No date given

Online
Metagenomics Microbial ecology Taxonomy Sequence analysis Sequence assembly Metatranscriptomics Function analysis Genomics Microbiology Mobile genetic elements Public health and epidemiology Pathology microbiome
Online

Workshops and courses

Learning Pathway Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq data

No date given

Online
advanced single-cell
Online

Workshops and courses

Learning Pathway Epigenetics data analysis with Galaxy

No date given

Online
Epigenomics beginner epigenetics genomic-intervals
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

No date given

Online
Genomics Microbiology Gene and protein families Sequence analysis Sequence composition, complexity and repeats beginner genome-annotation
Online

Workshops and courses

Learning Pathway Prediction of potential neoantigens

No date given

Online
cancer immunopeptidomics intermediate label-free proteogenomics

Activity log

Content provider

Type

Keywords

Owner

Galaxy Server administration - Galaxy from an administrator point of view

Submitting SARS-CoV-2 sequences to ENA

Introduction to 'Transcriptomics'

Proteomics - Label-free versus Labelled - How to Choose Your Quantitation Method

Sequence analysis - Mapping

Galaxy Server administration - Docker and Galaxy

Statistics - Interval-Wise Testing for omics data

Metagenomics - Analyses of metagenomics data - The global picture

Transcriptomics - Reference-based RNA-Seq data analysis

Development in Galaxy - Tool development and integration into Galaxy

Proteomics - Peptide and Protein ID using OpenMS tools

Sequence analysis - RAD-Seq de-novo data analysis

Introduction to Galaxy Analyses - Galaxy 101

Calling variants in non-diploid systems

Train the trainers - Introduction to training with Galaxy

Assembly - Unicycler Assembly

ToolFactory: Generating Tools From Simple Scripts

Essential genes detection with Transposon insertion sequencing

Transcriptomics - Introduction to Transcriptomics

Train the trainers - Good practices to run a workshop

Introduction to Galaxy Analyses - Introduction to Genomics and Galaxy

Transcriptomics - Visualization of RNA-Seq results with CummeRbund

Introduction to Galaxy - Using dataset collection

Galaxy Introduction - Visualization

Galaxy Server administration - Move from dev instance to production instance

Introduction to Galaxy - Understanding Galaxy history system

Contributing to the Galaxy Training Material - Good practices to run a workshop

Galaxy Server administration - Advanced customisation of a Galaxy instance

Development in Galaxy - BioBlend module, a Python library to use Galaxy API

Variant Analysis - Microbial Variant Calling

From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

Learning Pathway Introductory Python

Learning Pathway Detection of AMR genes in bacterial genomes

Learning Pathway Bacterial comparative genomics

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway From R to Machine Learning; an introductory course

Learning Pathway Onboarding for new contributors

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

Learning Pathway Proteogenomics

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Learning Pathway Admin Training Course

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Introduction to Data Driven Life Sciences

Learning Pathway Building training material in Galaxy

Learning Pathway Discovering Galaxy through climate analysis

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

Learning Pathway Artificial Intelligence and Machine Learning in Life Sciences using Python

Learning Pathway Train the Trainers

Learning Pathway Tool development for a nice & shiny subdomain

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway Introductory SQL

Learning Pathway FAIR Data Management

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Learning Pathway Introduction to Galaxy and Sequence analysis

Learning Pathway Machine learning

Learning Pathway Metagenomics data processing and analysis for microbiome

Learning Pathway Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq data

Learning Pathway Epigenetics data analysis with Galaxy

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

Learning Pathway Prediction of potential neoantigens