Galaxy Training

GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.

Showing 30 materials out of 38. View all results.

Genome annotation is the process of attaching biological information to sequences

Genome-Annotation - Introduction to Genome Annotation https://tess.elixir-europe.org/materials/genome-annotation-introduction-to-genome-annotation Genome annotation is the process of attaching biological information to sequences

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - ChIP-seq Galaxy Workshop https://tess.elixir-europe.org/materials/chip-seq-chip-seq-galaxy-workshop ChIP-sequencing is a method used to analyze protein interactions with DNA.

Training material for proteomics workflows in Galaxy

Proteomics - Peptide and Protein ID https://tess.elixir-europe.org/materials/proteomics-peptide-and-protein-id Training material for proteomics workflows in Galaxy

Training material for proteomics workflows in Galaxy

Proteomics - Protein FASTA Database Handling https://tess.elixir-europe.org/materials/proteomics-protein-fasta-database-handling Training material for proteomics workflows in Galaxy

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Docker and Galaxy https://tess.elixir-europe.org/materials/admin-corner-introduction Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Move from dev instance to production instance https://tess.elixir-europe.org/materials/admin-corner-move-from-dev-instance-to-production-instance Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - DNA Methylation data analysis https://tess.elixir-europe.org/materials/methylc-seq-dna-methylation-data-analysis-e05d88ae-87ee-45d9-8882-96c7b3c22646 DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) https://tess.elixir-europe.org/materials/chip-seq-identification-of-the-binding-sites-of-the-t-cell-acute-lymphocytic-leukemia-protein-1-tal1 ChIP-sequencing is a method used to analyze protein interactions with DNA.

Training material for proteomics workflows in Galaxy

Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL) https://tess.elixir-europe.org/materials/proteomics-peptide-and-protein-quantification-via-stable-isotope-labelling-sil Training material for proteomics workflows in Galaxy

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - Introduction https://tess.elixir-europe.org/materials/chip-seq-introduction ChIP-sequencing is a method used to analyze protein interactions with DNA.

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - DNA Methylation data analysis https://tess.elixir-europe.org/materials/methylc-seq-dna-methylation-data-analysis DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Variant calling: Diploid case https://tess.elixir-europe.org/materials/exome-seq-variant-calling-diploid-case Exome sequencing means that all protein-coding genes in a genome are sequenced

Quality control is an important preprocessing step in NGS data analyses.

NGS-QC - Dive into quality control https://tess.elixir-europe.org/materials/ngs-qc-dive-into-quality-control Quality control is an important preprocessing step in NGS data analyses.

Training material for proteomics workflows in Galaxy

Proteomics - Label-free versus Labelled - How to Choose Your Quantitation Method https://tess.elixir-europe.org/materials/proteomics-label-free-versus-labelled-how-to-choose-your-quantitation-method Training material for proteomics workflows in Galaxy

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Introduction - Galaxy Introduction: From peaks to genes https://tess.elixir-europe.org/materials/introduction-galaxy-introduction-from-peaks-to-genes Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - Introduction https://tess.elixir-europe.org/materials/methylc-seq-introduction DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq - Reference-based RNA-seq data analysis https://tess.elixir-europe.org/materials/rna-seq-reference-based-rna-seq-data-analysis RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Assembly - De Bruijn Graph Assembly https://tess.elixir-europe.org/materials/assembly-introduction-to-genome-assembly DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Galaxy Database schema https://tess.elixir-europe.org/materials/admin-corner-galaxy-database-schema Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

NGS-mapping - Introduction https://tess.elixir-europe.org/materials/ngs-mapping-introduction After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

NGS-mapping - Dive into mapping https://tess.elixir-europe.org/materials/ngs-mapping-dive-into-mapping After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

Genome annotation is the process of attaching biological information to sequences

Genome-Annotation - Microbial Genome Annotation https://tess.elixir-europe.org/materials/genome-annotation-microbial-genome-annotation Genome annotation is the process of attaching biological information to sequences

RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq - Introduction https://tess.elixir-europe.org/materials/rna-seq-introduction RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Introduction https://tess.elixir-europe.org/materials/exome-seq-introduction Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Exome sequencing data analysis https://tess.elixir-europe.org/materials/exome-seq-exome-sequencing-data-analysis Exome sequencing means that all protein-coding genes in a genome are sequenced

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Metagenomics - 16S Microbial Analysis with Mothur https://tess.elixir-europe.org/materials/metagenomics-16s-microbial-analysis-with-mothur Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Dev-Corner - BioBlend module, a Python library to use Galaxy API https://tess.elixir-europe.org/materials/dev-corner-introduction Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.

RAD-Seq - General introduction about RAD seq data analysis https://tess.elixir-europe.org/materials/rad-seq-general-introduction-about-rad-seq-data-analysis RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.

RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.

RAD-Seq - Reference-based RAD-Seq data analysis https://tess.elixir-europe.org/materials/rad-seq-reference-based-rad-seq-data-analysis RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.

RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.

RAD-Seq - de novo RAD-Seq data analysis https://tess.elixir-europe.org/materials/rad-seq-de-novo-rad-seq-data-analysis RAD-Sequencing is a reduced representation library method used to obtain genomic information on a whole genome without sequencing each nucleotides. Here, we propose some materials to learn how to analyze RAD-Seq data.
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scraper created Galaxy Training at 2017-02-14 04:16:35 UTC.