Galaxy Training

GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.

Showing 25 materials.

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Dev-Corner - BioBlend module, a Python library to use Galaxy API https://tess.elixir-europe.org/materials/dev-corner-introduction Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Docker and Galaxy https://tess.elixir-europe.org/materials/admin-corner-introduction Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Metagenomics - 16S Microbial Analysis with Mothur https://tess.elixir-europe.org/materials/metagenomics-16s-microbial-analysis-with-mothur Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

NGS-mapping - Introduction https://tess.elixir-europe.org/materials/ngs-mapping-introduction After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

NGS-mapping - Dive into mapping https://tess.elixir-europe.org/materials/ngs-mapping-dive-into-mapping After quality control, mapping sequences on reference genomes is the second step of most NGS data analysis process.

Quality control is an important preprocessing step in NGS data analyses.

NGS-QC - Introduction https://tess.elixir-europe.org/materials/ngs-qc-introduction Quality control is an important preprocessing step in NGS data analyses.

Quality control is an important preprocessing step in NGS data analyses.

NGS-QC - Dive into quality control https://tess.elixir-europe.org/materials/ngs-qc-dive-into-quality-control Quality control is an important preprocessing step in NGS data analyses.

Genome annotation is the process of attaching biological information to sequences

Genome-Annotation - Introduction to Genome Annotation https://tess.elixir-europe.org/materials/genome-annotation-introduction-to-genome-annotation Genome annotation is the process of attaching biological information to sequences

Genome annotation is the process of attaching biological information to sequences

Genome-Annotation - Microbial Genome Annotation https://tess.elixir-europe.org/materials/genome-annotation-microbial-genome-annotation Genome annotation is the process of attaching biological information to sequences

RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq - Introduction https://tess.elixir-europe.org/materials/rna-seq-introduction RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Introduction - Galaxy Introduction https://tess.elixir-europe.org/materials/introduction-galaxy-introduction Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Introduction - Galaxy Introduction: From peaks to genes https://tess.elixir-europe.org/materials/introduction-galaxy-introduction-from-peaks-to-genes Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Move from dev instance to production instance https://tess.elixir-europe.org/materials/admin-corner-move-from-dev-instance-to-production-instance Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

Admin-Corner - Galaxy Database schema https://tess.elixir-europe.org/materials/admin-corner-galaxy-database-schema Administration of Galaxy Servers (setting up, Docker use, databases, ...) can be a complex task

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - Introduction https://tess.elixir-europe.org/materials/chip-seq-introduction ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - ChIP-seq Galaxy Workshop https://tess.elixir-europe.org/materials/chip-seq-chip-seq-galaxy-workshop ChIP-sequencing is a method used to analyze protein interactions with DNA.

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - Introduction https://tess.elixir-europe.org/materials/methylc-seq-introduction DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - DNA Methylation data analysis https://tess.elixir-europe.org/materials/methylc-seq-dna-methylation-data-analysis DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Exome sequencing data analysis https://tess.elixir-europe.org/materials/exome-seq-exome-sequencing-data-analysis Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Variant calling: Diploid case https://tess.elixir-europe.org/materials/exome-seq-variant-calling-diploid-case Exome sequencing means that all protein-coding genes in a genome are sequenced

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

MethylC-Seq - DNA Methylation data analysis https://tess.elixir-europe.org/materials/methylc-seq-dna-methylation-data-analysis-e05d88ae-87ee-45d9-8882-96c7b3c22646 DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in eg. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germ-line specific gene and repetitive elements.

RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq - De novo transcriptome reconstruction with RNA-seq https://tess.elixir-europe.org/materials/rna-seq-de-novo-transcriptome-reconstruction-with-rna-seq RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

ChIP-sequencing is a method used to analyze protein interactions with DNA.

ChIP-Seq - Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) https://tess.elixir-europe.org/materials/chip-seq-identification-of-the-binding-sites-of-the-t-cell-acute-lymphocytic-leukemia-protein-1-tal1 ChIP-sequencing is a method used to analyze protein interactions with DNA.

Exome sequencing means that all protein-coding genes in a genome are sequenced

Exome-Seq - Introduction https://tess.elixir-europe.org/materials/exome-seq-introduction Exome sequencing means that all protein-coding genes in a genome are sequenced

RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq - Reference-based RNA-seq data analysis https://tess.elixir-europe.org/materials/rna-seq-reference-based-rna-seq-data-analysis RNA-sequencing is a method used to reveal the presence and quantity of RNA in a biological sample at a given moment in time.
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scraper created Galaxy Training at 2017-02-14 04:16:35 UTC.