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Online

Workshops and courses

Single-cell and sPatial Omics | Collaboration Fest

6 December 2024 @ 09:00 - 10:00

Online
cofest single-cell
Face-to-face

Workshops and courses

Workshop on high-throughput sequencing data analysis with Galaxy

10 - 14 March 2025

Freiburg, Germany

Face-to-face
Metagenomics Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis
Online

Workshops and courses

Learning Pathway Genome annotation for prokaryotes

No date given

Online
Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements genome annotation prokaryote
Online

Workshops and courses

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

No date given

Online
advanced
Online

Workshops and courses

Learning Pathway Admin Training Course

No date given

Online
Database management Informatics Data management 5-day course Galaxy administrators
Online

Workshops and courses

Learning Pathway Detection of AMR genes in bacterial genomes

No date given

Online
Whole genome sequencing Genomics Microbiology Microbial ecology Sequence assembly Public health and epidemiology Antimicrobial resistance Gene and protein families Sequence analysis Functional genomics Mobile genetic elements Infectious disease Metagenomics Taxonomy Pathology amr bacteria microgalaxy one-health
Online

Workshops and courses

Learning Pathway Tool development for a nice & shiny subdomain

No date given

Online
3-day course community subdomain tool development
Online

Workshops and courses

Learning Pathway From R to Machine Learning; an introductory course

No date given

Online
beginner
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

No date given

Online
beginner single-cell
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

No date given

Online
Ecology beginner
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 5 - Train-the-Trainer and mentoring programme

No date given

Online
beginner
Online

Workshops and courses

Learning Pathway Genome annotation for eukaryotes

No date given

Online
eukaryote genome annotation
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Ecological data analysis

No date given

Online
Ecology beginner
Online

Workshops and courses

Learning Pathway Proteogenomics

No date given

Online
beginner
Online

Workshops and courses

Learning Pathway Introduction to Data Driven Life Sciences

No date given

Online
introduction real-course
Online

Workshops and courses

Learning Pathway Clinical metaproteomics workflows within Galaxy

No date given

Online
beginner
Online

Workshops and courses

Learning Pathway Metagenomics data processing and analysis for microbiome

No date given

Online
Metagenomics Sequence assembly Microbial ecology Taxonomy Sequence analysis Metatranscriptomics Function analysis Public health and epidemiology Pathology microbiome
Online

Workshops and courses

Learning Pathway Applying single-cell RNA-seq analysis

No date given

Online
intermediate single-cell
Online

Workshops and courses

Learning Pathway Discovering Galaxy through climate analysis

No date given

Online
Climate Overview
Online

Workshops and courses

Learning Pathway Introductory SQL

No date given

Online
python real-course
Online

Workshops and courses

Learning Pathway Building training material in Galaxy

No date given

Online
intermediate
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

No date given

Online
Genomics Microbiology Gene and protein families Sequence analysis beginner
Online

Workshops and courses

Learning Pathway Train the Trainers

No date given

Online
trainers training
Online

Workshops and courses

Learning Pathway Introductory Python

No date given

Online
python real-course
Online

Workshops and courses

Learning Pathway FAIR Data Management

No date given

Online
data management data stewardship dmp fair
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

No date given

Online
Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Public health and epidemiology Sequence assembly Pathology beginner
Online

Workshops and courses

Learning Pathway Introduction to Galaxy and Sequence analysis

No date given

Online
Mapping beginner
Online

Workshops and courses

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

No date given

Online
Mapping beginner

Activity log

Content provider

Type

Keywords

Owner

Galaxy Server administration - Galaxy from an administrator point of view

Introduction to 'Transcriptomics'

Proteomics - Label-free versus Labelled - How to Choose Your Quantitation Method

Sequence analysis - Mapping

Galaxy Server administration - Docker and Galaxy

Statistics - Interval-Wise Testing for omics data

Metagenomics - Analyses of metagenomics data - The global picture

Transcriptomics - Reference-based RNA-Seq data analysis

Development in Galaxy - Tool development and integration into Galaxy

Proteomics - Peptide and Protein ID using OpenMS tools

Sequence analysis - RAD-Seq de-novo data analysis

Introduction to Galaxy Analyses - Galaxy 101

Galaxy Installation with Ansible

Train the trainers - Introduction to training with Galaxy

Assembly - Unicycler Assembly

An introduction to get started in genome assembly and annotation

Transcriptomics - Introduction to Transcriptomics

Train the trainers - Good practices to run a workshop

Introduction to Galaxy Analyses - Introduction to Genomics and Galaxy

Transcriptomics - Visualization of RNA-Seq results with CummeRbund

Introduction to Galaxy - Using dataset collection

Galaxy Introduction - Visualization

Galaxy Server administration - Move from dev instance to production instance

Introduction to Galaxy - Understanding Galaxy history system

Contributing to the Galaxy Training Material - Good practices to run a workshop

Galaxy Server administration - Advanced customisation of a Galaxy instance

Development in Galaxy - BioBlend module, a Python library to use Galaxy API

Variant Analysis - Microbial Variant Calling

Tutorials using public Galaxy at usegalaxy.org - NGS data logistics

Tutorials using public Galaxy at usegalaxy.org - Calling very rare variants

Single-cell and sPatial Omics | Collaboration Fest

Workshop on high-throughput sequencing data analysis with Galaxy

Learning Pathway Genome annotation for prokaryotes

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Learning Pathway Admin Training Course

Learning Pathway Detection of AMR genes in bacterial genomes

Learning Pathway Tool development for a nice & shiny subdomain

Learning Pathway From R to Machine Learning; an introductory course

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Learning Pathway Gallantries Grant - Intellectual Output 5 - Train-the-Trainer and mentoring programme

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway Proteogenomics

Learning Pathway Introduction to Data Driven Life Sciences

Learning Pathway Clinical metaproteomics workflows within Galaxy

Learning Pathway Metagenomics data processing and analysis for microbiome

Learning Pathway Applying single-cell RNA-seq analysis

Learning Pathway Discovering Galaxy through climate analysis

Learning Pathway Introductory SQL

Learning Pathway Building training material in Galaxy

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

Learning Pathway Train the Trainers

Learning Pathway Introductory Python

Learning Pathway FAIR Data Management

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

Learning Pathway Introduction to Galaxy and Sequence analysis

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding