Keywords: beginner, epigenetics, genomic-intervals

Learning objectives:

• Apply an enrichment analysis and a robust peak detection
• Apply appropriate analysis and quality control steps for ATAC-Seq
• Apply appropriate analysis and quality control steps for CUT&RUN
• Assess the quality of a ChIP-seq experiment
• Call enriched regions or peaks
• Extract coverage files
• Familiarize yourself with the basics of Galaxy
• Find protein binding motifs
• Generate a heatmap of transcription start site accessibility
• Get a first intuition what are common pitfalls.
• Inspect the read quality
• Learn how histories work
• Learn how to analyse methylation data
• Learn how to create a workflow
• Learn how to extract and run a workflow
• Learn how to obtain data from external sources
• Learn how to run tools
• Learn how to share a history
• Learn how to share your work
• Learn how to upload a file
• Learn how to use a tool
• Learn how to view histories
• Learn how to view results
• Map reads on a reference genome
• Trim low quality bases
• Visualise peaks for specific regions

Event types:

• Workshops and courses

Sponsors: Australian BioCommons, ELIXIR Europe, Erasmus Medical Center, The Pennsylvania State University, University of Freiburg, de.NBI

Scientific topics: Epigenomics