Workshops and courses

Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability

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Date: 12 - 16 October 2026

Language of instruction: English

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Join us for an intensive, week-long, in-person training designed to elevate your Galaxy expertise to new heights. This workshop is tailored for data scientists, advanced Galaxy users, and team leaders who need to scale, automate, and publish their data analysis workflows for batch processing and production-level applications.

Keywords: advanced, command-line, galaxy-interface, workflow

Venue: Institut Pasteur, 25-28 Rue du Dr Roux

City: Paris

Country: France

Postcode: 75015

Learning objectives:

  • Add technical support for a tutorial
  • Annotate a Galaxy workflows with essential metadata
  • Annotate and apply best practices to data analysis Galaxy workflows for consistency and reusability
  • Be able to write simple shell scripts for running multiple workflows concurrently or sequentially.
  • Create a high resolution image of your Workflow, ready for a poster
  • Create a tutorial from scratch
  • Create clean, non-repetitive workflows
  • Create hands-on
  • Implement robust tests to ensure workflow reliability and accuracy
  • Interact with Galaxy via BioBlend.
  • Learn how to compress high resolution Workflow images to share them in the web
  • Learn how to use Pangolin to assign annotated variants to lineages.
  • Learn how to use Workflow Parameters to improve your Workflows
  • Learn how to utilize external tools to make high resolution images of your Workflow
  • Learn to use the planemo run subcommand to run workflows from the command line.
  • Link a tutorial to a topic
  • Setup Life Monitor
  • Successfully integrate key data analysis Galaxy workflows into IWC, improving accessibility and usability
  • Understand key aspects of workflows
  • Understanding, viewing and creating Galaxy Workflow Run Crates
  • Understanding, viewing and creating workflow reports

Organizer: Anthony Bretaudeau (https://orcid.org/0000-0003-0914-2470), Bérénice Batut (https://orcid.org/0000-0001-9852-1987), Clea Siguret (https://orcid.org/0009-0005-6140-0379), Fabien Mareuil (https://training.galaxyproject.org/training-material/hall-of-fame/fmareuil/), Gildas Le Corguillé (https://training.galaxyproject.org/training-material/hall-of-fame/lecorguille/), Laura Leroi (https://orcid.org/0000-0003-3748-4179), Loraine Guéguen (https://training.galaxyproject.org/training-material/hall-of-fame/loraine-gueguen/), Marie Josse (https://training.galaxyproject.org/training-material/hall-of-fame/Marie59/), Romane LIBOUBAN (https://orcid.org/0009-0001-4920-9951), Solenne Correard (https://orcid.org/0000-0002-0554-5443)

Event types:

  • Workshops and courses

Sponsors: Institut Français de Bioinformatique

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