Learning Pathway Creation of a Community CoDex and lab (and optionally of a Special Interest Group (SIG))
Date: No date given
Language of instruction: English
The Galaxy Communities Dock or Galaxy CoDex is a centralized repository that ensures the versioning and documentation of the community components (Batut et al., 2024; Nasr et al., 2024).
The codex is composed of :
- A GitHub repository specific to each community with curated lists of tools, workflows and tutorials relevant to the community.
For example : The curated resources (tools, workflows, tutorials) for the microgalaxy codex.
- The Community lab, a centralised webpage that enables communities to rapidly aggregate, curate, integrate, display, and launch relevant tools, workflows, and training on different Galaxy servers. This user-friendly interface, built on the Galaxy framework, provides community members with data analysis capacity without requiring programming expertise. Users can run individual tools or create complex workflows, with full provenance tracking to ensure reproducibility, designed specifically for the community research (Nasr et al., 2024). For example, the microgalaxy lab (Europe).
The Special Interest Group (SIG) refers to a dedicated scientific community that crosses individual lab boundaries and wants to collaborate, share resources, support each other, and/or collectively advocate on a given theme. We have SIGs based on region, domain of science, and more. You might consider that a SIG covers any group of like-minded Galaxy enthusiasts not currently combined into a Working Group.
Here is the list of currently existing SIGs and the microgalaxy community of practice webpage
For more information, see: {% cite codex-gcc %} and {% cite nasr2024 %}.
Description of the learning pathway:
- Module 1 : The creation of a community CoDex (including the lab interface). Generation of the CoDex includes the generation of three tables : A tool table, a tutorial table and a workflow table.
- Module 2: Creation a Special Interest Group (SIG) page (optional).
Keywords: codex, community, lab, sig
Learning objectives:
- Create a community reviewed table for Galaxy tutorials within a specific scientific domain
- Create a community reviewed table for Galaxy workflows within a specific scientific domain
- Create community reviewed resources for Galaxy tools within a specific scientific domain
- Embed the tutorial table in a community page
- Embed the workflow table in a community page
- Explain why metadata is key for such community resources
- Provide a reference, rather than a tutorial
- Signpost community leads and users to useful resources
Event types:
- Workshops and courses
Activity log