TeSS (Training eSupport System)

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Showing 30 materials out of 367

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PhenoMeNal: accessing metabolomics workflows in Galaxy

• beginner
Metabolomics Chemical biology Galaxy
Video

A common framework for designing portable federated pipelines

•• intermediate
Data architecture, analysis and design data access federated data analysis
Installation instructions, Manual

How to use Common Workflow Language

• beginner
Workflows commonwl common workflow language CWL eLearning EeLP
Online material, Recording, hands-on tutorial

MaBoSS: a tool for modelling biological systems

• beginner
Mathematical modelling cancer Signalling boolean modelling logical modelling
Recorded webinar

Text mining for biocuration

Natural language processing
Training materials, Video

GA4GH Passports and ELIXIR AAI

•• intermediate
AAI GA4GH Passports Auhtorisation
Video

Status Update Code of Conduct: Teaming up & Talking about it

•• intermediate
GDPR Healthcare research data harmonization
Webinar

EBI Metagenomics: analysing and exploring metagenomics data

Metagenomics MGnify Sequence Analysis Microbiology
Video

Useful ontologies for harmonizing cohort data

• beginner
Data integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation
Video

Applying data standards to the harmonization of COVID-19 datasets from different sources

• beginner
Data integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies
Video

Annotating data using next generation biobanking ontology (NGBO)

• beginner
Data integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary
Video

FAIR software tools

• beginner
Software engineering FAIR software tools Software
Video

Making cohort data FAIR

• beginner
Data integration and warehousing Data management FAIR data Cohort data Ontologies Standards
Video

Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?

• beginner
Data management FAIR data Health data Open science
Video

Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects

•• intermediate
Data architecture, analysis and design Cloud computing Data analysis Standards Translational research
Series of videos

CINECA discovery service catalog

•• intermediate
Cohort data Standards federated data analysis Beacon queries
Tutorial

MGnify quick tour

Metagenomics Sequence analysis MGnify Microbiology
Recorded webinar

Accessing human disease and protein variant information in UniProtKB

Biomedical science Protein variants
e-learning

Structural volume data

Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
Life Sciences Literature Database

Finding the data behind research publications with Europe PMC

Biomedical Literature Data links databases External links
Life Sciences Literature Database

Discovering scientific evidence using Europe PMC SciLite annotation

Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
Course materials

Cancer genomics and transcriptomics
Recorded webinar

Improving the accessibility of the EMBL-EBI website: background, process, and lessons
Course materials

Practical biocuration
Webinar

Preprint discovery 101: Tips & tricks for authors and readers

Europe PMC, Preprints
Webinar

Integrating publications into bioinformatics analysis

Europe PMC REST API Bioinformatic analysis
Recorded webinar

Genomic features that regulate gene expression, with Ensembl

Epigenetics Epigenomics Gene expression
e-learning

A journey through bioinformatics: Explore resources from EMBL-EBI

Bioinformatics introduction Bioinformatic databases PDBe
Recorded webinar

Data-driven modelling of intercellular interactions in the tumour microenvironment

Computational biology Oncology Personalised medicine
Recorded webinar

Ensembl gene annotation for clinical genomics

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Training coordinator

PhenoMeNal: accessing metabolomics workflows in Galaxy

A common framework for designing portable federated pipelines

How to use Common Workflow Language

MaBoSS: a tool for modelling biological systems

Text mining for biocuration

GA4GH Passports and ELIXIR AAI

Status Update Code of Conduct: Teaming up & Talking about it

EBI Metagenomics: analysing and exploring metagenomics data

Useful ontologies for harmonizing cohort data

Applying data standards to the harmonization of COVID-19 datasets from different sources

Annotating data using next generation biobanking ontology (NGBO)

FAIR software tools

Making cohort data FAIR

Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?

Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects

CINECA discovery service catalog

MGnify quick tour

Accessing human disease and protein variant information in UniProtKB

Structural volume data

Finding the data behind research publications with Europe PMC

Discovering scientific evidence using Europe PMC SciLite annotation

Cancer genomics and transcriptomics

Improving the accessibility of the EMBL-EBI website: background, process, and lessons

Practical biocuration

Preprint discovery 101: Tips & tricks for authors and readers

Integrating publications into bioinformatics analysis

Genomic features that regulate gene expression, with Ensembl

A journey through bioinformatics: Explore resources from EMBL-EBI

Data-driven modelling of intercellular interactions in the tumour microenvironment

Ensembl gene annotation for clinical genomics

WEBINAR: BioSamples: supporting multi-omics data integration with FAIR sample records

Genome bioinformatics: from short- to long-read sequencing

Metagenomics bioinformatics at MGnify

Systems biology: from large datasets to biological insight

Structural bioinformatics

Managing a bioinformatics core facility

FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling

EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop

Using the Ensembl Genome Browser

Genome bioinformatics: from short- to long-read sequencing

Plant genomes: from data to discovery

Structural bioinformatics

Managing a bioinformatics core facility

Metagenomics bioinformatics at MGnify

Single-cell RNA-seq analysis with Python

Proteomics bioinformatics

Bioinformatics for immunologists

Cancer genomics and transcriptomics

Summer school in bioinformatics

Bioinformatics for principal investigators

Systems biology: from large datasets to biological insight

Introduction to metabolomics analysis

Bioinformatics resources for protein biology

Microscopy data analysis: machine learning and the BioImage Archive

Data-driven approaches to understanding dementia

Exploring human genetic variation

Livestock genomics

Mathematics of life: modelling molecular mechanisms

Introduction to multi-omics data integration and visualisation

Exploring gene and environmental exposure interactions to understand human health and disease

CINECA PROJECT

European Bioinformatics Institute (EBI)