EMBL-EBI
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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Installation instructions, Manual
How to use Common Workflow Language
• beginnerWorkflows commonwl common workflow language CWL eLearning EeLP -
Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Recorded webinar
Text mining for biocuration
Natural language processing
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Training materials, Video
GA4GH Passports and ELIXIR AAI
•• intermediateAAI GA4GH Passports Auhtorisation -
Video
Status Update Code of Conduct: Teaming up & Talking about it
•• intermediateGDPR Healthcare research data harmonization -
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
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Video
Useful ontologies for harmonizing cohort data
• beginnerData integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Video
FAIR software tools
• beginnerSoftware engineering FAIR software tools Software -
Video
Making cohort data FAIR
• beginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards -
Video
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?
• beginnerData management FAIR data Health data Open science -
Video
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects
•• intermediateData architecture, analysis and design Cloud computing Data analysis Standards Translational research -
Series of videos
CINECA discovery service catalog
•• intermediateCohort data Standards federated data analysis Beacon queries -
Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
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Recorded webinar
Mathematical modelling as knowledge mapping in PhysiCell: a guided tour
Personalised medicine Computational biology
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e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Course materials
Cancer genomics and transcriptomics
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Recorded webinar
Data protection and security aspects of running simulations on personal data with HPC
Data security Personalised medicine Computer science
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Recorded webinar
Accessing human disease and protein variant information in UniProtKB
Protein variants Biomedical science
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Course materials
Practical biocuration
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e-learning
Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training
Plant biology Machine learning Data architecture, analysis and design Database management Genotype and phenotype Data standards Spatial transcriptomics
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Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Recorded webinar
Introducing the new UniProt Disease Portal
Proteins Drug discovery
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Recorded webinar
EurOPDX Data Portal: a repository of patient-derived xenograft models
Drug discovery
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Workshops and courses
WEBINAR: BioSamples: supporting multi-omics data integration with FAIR sample records
4 October 2023 @ 16:00 - 17:00
Online
Data management Data integration and warehousing Omics Data submission, annotation, and curation Data handling BioSamples Data Integration Metadata Multiomics Data submission Data curation -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
18 - 22 November 2024
United Kingdom
Face-to-face
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Workshops and courses
Metagenomics bioinformatics at MGnify
9 - 13 October 2023
United Kingdom
Face-to-face
Database search Metagenomics Metagenomic sequencing Strain resolution Functional analysis Data submission Metagenome-Assembled Genome (MAG) -
Workshops and courses
Systems biology: from large datasets to biological insight
23 - 27 October 2023
United Kingdom
Face-to-face
Network analysis Systems biology Machine learning Deep learning Network inference Logic modelling Data integration Multi-Omics Factor Analysis MOFA -
Workshops and courses
Structural bioinformatics
2 - 6 October 2023
United Kingdom
Face-to-face
Protein sequence Structure analysis Structure prediction Protein Data Bank in Europe - Knowledge Base Protein Data Bank in Europe Electron Microscopy Data Bank AlphaFold Database Structures (structures) alphafold protein function structural biology atomic resolution fold and topology -
Workshops and courses
Managing a bioinformatics core facility
7 - 9 November 2023
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
20 - 24 November 2023
United Kingdom
Face-to-face
Read mapping Variant calling Genomics Sequencing Ensembl European Nucleotide Archive European Variation Archive DNA & RNA (dna-rna) Long reads genome graph analysis pipeline next-generation sequencing read mapping sequence alignment and mapping (SAM) -
Workshops and courses
Plant genomes: from data to discovery
18 - 22 November 2024
Online
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Workshops and courses
Structural bioinformatics
4 - 8 November 2024
Online
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Workshops and courses
Managing a bioinformatics core facility
29 - 31 October 2024
United Kingdom
Face-to-face
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Workshops and courses
Metagenomics bioinformatics at MGnify
23 - 27 September 2024
Online
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Workshops and courses
Single-cell RNA-seq analysis with Python
23 - 27 September 2024
Online
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Workshops and courses
Proteomics bioinformatics
15 - 19 July 2024
United Kingdom
Face-to-face
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Workshops and courses
Bioinformatics for immunologists
1 - 5 July 2024
United Kingdom
Face-to-face
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Workshops and courses
Cancer genomics and transcriptomics
24 - 28 June 2024
Online
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Workshops and courses
Summer school in bioinformatics
17 - 21 June 2024
United Kingdom
Face-to-face
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Bioinformatics for principal investigators
11 - 13 June 2024
United Kingdom
Face-to-face
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Workshops and courses
Systems biology: from large datasets to biological insight
3 - 7 June 2024
Online
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Workshops and courses
Introduction to metabolomics analysis
13 - 17 May 2024
United Kingdom
Face-to-face
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Bioinformatics resources for protein biology
8 - 10 May 2024
Face-to-face
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Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
22 - 26 April 2024
Online
Image analysis Bioimaging Machine learning Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Data-driven approaches to understanding dementia
8 - 12 April 2024
United Kingdom
Face-to-face
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Exploring human genetic variation
3 - 5 April 2024
Face-to-face
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Workshops and courses
Livestock genomics
18 - 22 March 2024
Online
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Workshops and courses
Mathematics of life: modelling molecular mechanisms
11 - 15 March 2024
Online
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Workshops and courses
Introduction to multi-omics data integration and visualisation
4 - 8 March 2024
United Kingdom
Face-to-face
Pathway or network ID mapping Molecular interactions, pathways and networks Molecular biology Omics Cross domain (cross-domain) Cytoscape networks and pathways Data integration -
Workshops and courses
Exploring gene and environmental exposure interactions to understand human health and disease
19 - 23 February 2024
United Kingdom
Face-to-face
Genotype and phenotype Computational biology GWAS study European Genome-phenome Archive NHGRI-EBI GWAS Catalog Human ecosystems genes and environment interactions human phenotypes environmental readouts ethics
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CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
European Bioinformatics Institute (EBI)
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
347 training materials41 events (1718 past events)European Bioinformatics Institute (EBI) http://www.ebi.ac.uk https://tess.elixir-europe.org/content_providers/european-bioinformatics-institute-ebi EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry. /system/content_providers/images/000/000/002/original/EBI_logo.png?1469458224
Activity log
