PhenoMeNal: accessing metabolomics workflows in Galaxy

PhenoMeNal (Phenome and Metabolome aNalysis) is a standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications. This course will give you an overview of PhenoMeNal, how to create your cloud research environment, and how to access Galaxy workflows for metabolomics data.

This course is aimed at metabolomics researchers and bioinformaticians. An undergraduate-level understanding of biology and metabolomics would be an advantage. You do not need to be a bioinformatician to use PhenoMeNal, but an understanding of the tools and steps used to analyse metabolomics data would be useful.

Before completing this course it is advised to complete the "Metabolomics: An Introduction" and possibly the "MetaboLights: Quick Tour" courses.

Scientific topics: Chemical biology, Metabolomics

Keywords: Galaxy

Target audience: Beginners

Difficulty level: Beginner

Licence: Creative Commons Attribution Share-Alike 4.0

Authors: Namrata Kale, Sijin He, Pablo Moreno

External resources:
PhenoMeNal: accessing metabolomics workflows in Galaxy A description of PhenoMeNal and when to use it, the creation of a cloud research environment and how to access Galaxy workflows via PhenoMeNal. Chemical biology Metabolomics Galaxy Beginners