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Tutorial
Metagenomics Bioinformatics
Metagenomics MGnify Sequence Analysis Microbiology
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Analysing and visualising microbiome-derived datasets using the MGnify Web API
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Webinar
Ontology Lookup Service (OLS)
Ontology and terminology
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Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
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Webinar
Europe PMC: Services for academic authors
Europe PMC ORCID Biomedical Literature
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Webinar
Extracting research evidence from publications
Literature search Biomedical Literature Europe PMC Text mining
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Webinar
Europe PMC: get the most from literature searches
Literature search Life sciences publications Europe PMC
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Webinar
Navigating the data-rich literature: finding evidence in biomedical publications
Europe PMC Biomedical Literature Literature search
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Webinar
Extracting gene-disease evidence from literature, genetics, genomics and more
Europe PMC Open Targets gene-disease relationship Text mining
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Life Science Literature Database, Life Sciences Literature Database
Using Europe PMC for effective literature research
• beginnerLiterature search peer reviewed articles Europe PMC, Preprints Data links Annotations Europe PMC, ORCID -
Recorded webinar
Searching and browsing scientific publications with the new Europe PMC
Literature search Data links preprints
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Webinar
How to Share Text Mining Results in Biology
Europe PMC Text mining Literature search
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Webinar
Effective Literature Research with Europe PMC
• beginnerEurope PMC Biomedical Literature Literature search -
Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
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Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Video
What happens to your data?
Data management metadata ArrayExpress
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Giving data context, structure and meaning
metadata Ontologies
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Video
Why share your data?
Data management data sharing
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Video
Managing and making the most of your data
Data management
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Video
Tools for data management planning
Data management Data managment plan
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Recorded webinar
Life cell by cell: Introduction to Single Cell Expression Atlas
Gene expression
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Recorded webinar
Using the PDBe graph API
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Recorded webinar
Introduction to the Ensembl Bacteria genome browser
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Workshops and courses
Inferring cell-cell communication through spatial transcriptomics data
18 September 2024
Online
Transcriptomics Cell biology Omics Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics Tissue biology Cell-cell interactions Cell signalling cell-cell communication cell-cell interaction -
Workshops and courses
Gene-environment interactions in human health and disease
17 - 21 March 2025
United Kingdom
Face-to-face
GWAS study Genotype and phenotype Computational biology European Genome-phenome Archive NHGRI-EBI GWAS Catalog Human ecosystems genes and environment interactions human phenotypes environmental readouts ethics -
Workshops and courses
Introduction to multi-omics data integration and visualisation
3 - 7 March 2025
United Kingdom
Face-to-face
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Workshops and courses
Developing data infrastructures and analytical systems for spatial omics
25 September 2024
Online
Transcriptomics Omics Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics Tissue biology Cell-cell interactions -
Workshops and courses
Methods for infectious disease modelling using genomics
15 - 19 September 2025
United Kingdom
Face-to-face
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Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Workshops and courses
Building a spatial transcriptomics platform
2 October 2024
Online
Transcriptomics Imaging Light microscopy Omics Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics -
Workshops and courses
Visualising integrated single cell and spatial transcriptomics datasets
9 October 2024
Online
Transcriptomics Imaging Omics Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell -
Workshops and courses
Introduction to metabolomics analysis
20 - 23 May 2025
United Kingdom
Face-to-face
Metabolomics Mass spectrometry data Metabolic network modelling MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Metagenomics bioinformatics at MGnify
6 - 10 October 2025
United Kingdom
Face-to-face
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Workshops and courses
Managing a bioinformatics core facility
25 - 27 November 2025
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Introduction to RNA-seq and functional interpretation
24 - 28 February 2025
Online
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Workshops and courses
Managing a bioinformatics core facility
29 - 31 October 2024
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
18 - 22 November 2024
United Kingdom
Face-to-face
Genomics Variant calling Sequencing Read mapping Ensembl European Nucleotide Archive European Variation Archive DNA & RNA (dna-rna) Long reads genome graph analysis pipeline next-generation sequencing read mapping sequence alignment and mapping (SAM) -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
17 - 21 November 2025
United Kingdom
Face-to-face
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Workshops and courses
Structural bioinformatics
4 - 8 November 2024
Online
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Workshops and courses
Technological advances and computational approaches for spatially-resolved transcriptomics
11 September 2024
Online
Omics Transcriptomics Gene expression Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics Tissue biology Cell-cell interactions Cell signalling cell-cell communication cell-cell interaction single-cells -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
31 March - 4 April 2025
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Summer school in bioinformatics
16 - 20 June 2025
United Kingdom
Face-to-face
Protein Data Bank in Europe - Knowledge Base BioModels database BioImage Archive Introduction Data management Genome variation Structural bioinformatics Modelling cell signalling Bioimage analysis -
Workshops and courses
Metagenomics bioinformatics at MGnify
23 - 27 September 2024
Online
Metagenomic sequencing Metagenomics Database search results MGnify InterPro Proteins (proteins) DNA & RNA (dna-rna) strain resolution functional analysis data submission Metagenome-Assembled Genome (MAG) -
Workshops and courses
Cancer genomics and transcriptomics
12 - 16 May 2025
Online
Next-generation sequencing SNV analysis CNV analysis CRISPR-Cas9 Long-read RNA-seq -
Workshops and courses
Structural bioinformatics
27 - 31 October 2025
Online
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Workshops and courses
Data visualisation for biology
24 - 26 June 2025
United Kingdom
Face-to-face
Data visualisation Data exploration User experience Visual analytics -
Workshops and courses
Single-cell RNA-seq analysis with Python
17 - 21 February 2025
Online
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Workshops and courses
Proteomics bioinformatics
14 - 18 July 2025
United Kingdom
Face-to-face
-
Workshops and courses
Single-cell RNA-seq analysis with Python
23 - 27 September 2024
Online
RNA-Seq analysis Expression data Python script Dimensionality reduction Expression Atlas Spatial mapping of cell types Droplet-based single-cell RNA library preparation single cell expression atlas dimensionality reduction -
Workshops and courses
Spatial multi-omics integration: metabolites meet RNA
16 October 2024
Online
Metabolomics Transcriptomics Data integration Advances in spatial omics RNA FISH Spatial multi-omics -
Workshops and courses
Systems biology: from large datasets to biological insight
7 - 11 July 2025
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration
Activity log
