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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
-
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
-
e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
-
Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
-
Recorded webinar
The future of preprint peer review
Literature and language
-
e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
-
Recorded webinar
Practically FAIR
Translational medicine Data architecture, analysis and design
-
Recorded webinar
Applications and impacts of the BrAPI project on plant breeding
Agricultural science Database management
-
Recorded webinar
PsyArXiv preprints in Europe PMC
Literature and language
-
Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
-
Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
-
Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
-
Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
-
e-learning
PDBeFold: Searching for structural homologues of a protein
Structural biology Structural homologues Structure alignments Structural comparison PDBe
-
e-learning
Molecular building blocks of life: A curated collection of EMBL-EBI on-demand training
Molecular biology Metabolomics Small molecules Proteomics single-cell transcriptomics
-
Recorded webinar
A guide to exploring drug-like compounds and their biological targets using ChEMBL
Chemical biology Drug discovery
-
Recorded webinar
Principles of research data management
Data management
-
Recorded webinar
HPC boosts mathematical models’ promises of personalised medicine
Simulation experiment Computational biology Personalised medicine
-
Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
-
Recorded webinar
The case of data reuse: ethical, legal, and societal issues in international genomic data access and sharing
-
Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
-
e-learning
2022 highlights
Bioinformatics Introduction
-
Webinar
Effective Literature Research with Europe PMC
• beginnerEurope PMC Biomedical Literature Literature search -
Webinar
How to Share Text Mining Results in Biology
Europe PMC Text mining Literature search
-
e-learning
ResOps: Cloud-native tools and technology for researchers
Computer science Data architecture, analysis and design Software engineering
-
Recorded webinar
Accessing fine-grained Molecular Interactions data with IntAct
Molecular interactions, pathways and networks Protein interactions
-
Workshops and courses
How to organise and share my imaging data?
14 May - 2 July 2025
Online
Data management Bioimaging -
Workshops and courses
Introduction to metabolomics analysis
20 - 23 May 2025
United Kingdom
Face-to-face
Metabolomics Mass spectrometry data Metabolic network modelling MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Towards open and standardised imaging data: an introduction to Bio-Formats, OME-TIFF, and OME-Zarr
28 May 2025 @ 09:00 - 17:00
Online
Data curation and archival -
Workshops and courses
Data management in a bioimage informatics data flow
4 June 2025 @ 09:00 - 17:00
Online
Data management Data management plan Data management planning Bioimaging -
Workshops and courses
From sequences to structures: Protein characterisation using EMBL-EBI APIs
5 June 2025 @ 09:00 - 17:00
Online
Sequence alignment Protein sequence analysis Structure prediction Workflow format Job Dispatcher UniProt: The Universal Protein Resource InterPro Protein Data Bank in Europe AlphaFold Database Proteins -
Workshops and courses
A FAIR and scalable workflow for plankton phenogenomics at single cell level
11 June 2025 @ 09:00 - 17:00
Online
Data management Marine biology Bioimaging FAIR data Workflows -
Workshops and courses
Summer school in bioinformatics
16 - 20 June 2025
United Kingdom
Face-to-face
Protein Data Bank in Europe - Knowledge Base BioModels database BioImage Archive Introduction Data management Genome variation Structural bioinformatics Modelling cell signalling Bioimage analysis -
Workshops and courses
Data science for life scientists
16 - 20 June 2025
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Data visualisation for biology
24 - 26 June 2025
United Kingdom
Face-to-face
Data visualisation Data exploration User experience Visual analytics -
Workshops and courses
Open FAIR data: the role of public data archives
25 June 2025 @ 09:00 - 17:00
Online
Imaging Data deposition EBI BioSamples Database BioImage Archive -
Workshops and courses
A journey to FAIR bioimage data
2 July 2025 @ 09:00 - 17:00
Online
Bioimaging Data management Data management planning -
Workshops and courses
Systems biology: from large datasets to biological insight
7 - 11 July 2025
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
Proteomics bioinformatics
14 - 18 July 2025
United Kingdom
Face-to-face
-
Workshops and courses
Methods for infectious disease modelling using genomics
14 - 19 September 2025
United Kingdom
Face-to-face
Modelling and simulation Infectious disease Phylogenetic analysis Genomics Public health and epidemiology infectious diseases mathematical modelling genomics phylodynamics public health -
Workshops and courses
Metagenomics bioinformatics at MGnify
6 - 10 October 2025
United Kingdom
Face-to-face
Metagenomics Metagenomic sequencing Database search Strain resolution Functional analysis Metagenome-Assembled Genome (MAG) -
Workshops and courses
Structural bioinformatics
27 - 31 October 2025
Online
Structure analysis Protein folds and structural domains Structure prediction AlphaFold Database -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
17 - 21 November 2025
United Kingdom
Face-to-face
-
Workshops and courses
Managing a bioinformatics core facility
8 - 10 December 2025
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Single-cell RNA-seq analysis with Python
2 - 6 February 2026
Online
-
Workshops and courses
Introduction to RNA-seq and functional interpretation
9 - 13 February 2026
Online
RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts -
Workshops and courses
Introduction to multi-omics data integration and visualisation
2 - 6 March 2026
United Kingdom
Face-to-face
-
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
16 - 20 March 2026
Online
Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Data-driven approaches to understanding dementia
13 - 17 April 2026
United Kingdom
Face-to-face
-
Workshops and courses
Introduction to metabolomics analysis
27 April - 1 May 2026
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Systems biology: from large datasets to biological insight
11 - 15 May 2026
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
Data science for life scientists
15 - 19 June 2026
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Proteomics bioinformatics
6 - 10 July 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
Activity log
