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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
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e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
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Course materials
Single cell RNA-seq analysis using Python
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Course materials
Microscopy data analysis: machine learning and the BioImage Archive
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e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Recorded webinar
UniProt COVID-19 website
Proteomics
-
e-learning
The International Mouse Phenotyping Consortium: Finding phenotypes for your gene of interest
Genotype and phenotype Model organisms Gene function Mouse models IMPC Mammalian Phenotype Ontology Mouse knockouts CRISPR
-
e-learning
Pathogens Portal: Quick tour
-
Recorded webinar
Multi-omics comparative pathway analysis with ReactomeGSA
Omics
-
Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
-
Recorded webinar
A guide to exploring drug-like compounds and their biological targets using ChEMBL
Chemical biology Drug discovery
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Recorded webinar
A guide to molecular interactions
Molecular interactions, pathways and networks
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Recorded webinar
A guide to EBI Search
-
Recorded webinar
Methods in genomic variant calling
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Recorded webinar
Selecting and evaluating preprints for Journal Club
Literature and language
-
Recorded webinar
Inferring cell-cell communication through spatial transcriptomics data
Transcriptomics Cell biology Omics
-
Recorded webinar
I made my code open - now what? Steps to a thriving open software project
Software management FAIR data Open science Machine learning
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Recorded webinar
Getting started with the Open Targets Platform GraphQL API
Drug discovery
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Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
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Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
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Recorded webinar
PsyArXiv preprints in Europe PMC
Literature and language
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Workshops and courses
UniProt
2 October 2025 - 7 May 2026
Online
protein Function analysis Protein variants Annotation Sequence analysis UniProt: The Universal Protein Resource -
Workshops and courses
An introduction to Nextflow
28 January 2026 @ 09:00 - 17:00
Online
Workflows nextflow -
Workshops and courses
Single-cell RNA-seq analysis with Python
2 - 6 February 2026
Online
-
Workshops and courses
Introduction to RNA-seq and functional interpretation
9 - 13 February 2026
Online
RNA-Seq analysis Function analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts -
Workshops and courses
Exploring large-scale proteomics data in UniProt
12 February 2026 @ 09:00 - 17:00
Online
Proteins Protein sequence Protein function prediction Function analysis UniProt: The Universal Protein Resource protein -
Workshops and courses
Mapping biology in space: a guide to technologies and workflows in spatial transcriptomics
18 February 2026 @ 09:00 - 17:00
Online
Transcriptomics RNA-Seq spatial transcriptomics transcriptomics -
Workshops and courses
Decoding spatial transcriptomics through sequences, pixels, and bioinformatics
18 February - 8 April 2026
Online
Transcriptomics Spatial transcriptomics RNA sequencing data analysis -
Workshops and courses
Imaging-based spatial transcriptomics: methods, preprocessing and quality control
25 February 2026 @ 09:00 - 17:00
Online
Transcriptomics Imaging transcriptomics spatial transcriptomics imaging -
Workshops and courses
Introduction to multi-omics data integration and visualisation
2 - 6 March 2026
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Mapping tissue remodelling using sequencing-based spatial transcriptomics
4 March 2026 @ 09:00 - 17:00
Online
Transcriptomics RNA-Seq spatial data spatial transcriptomics -
Workshops and courses
Interactive visualisation of spatial transcriptomics data
11 March 2026 @ 09:00 - 17:00
Online
Transcriptomics RNA-Seq Data visualisation spatial transcriptomics data visualisation -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
16 - 20 March 2026
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Managing spatial data: insights from developing the Human Biomolecular Atlas Program (HuBMAP) data portal
1 April 2026 @ 09:00 - 17:00
Online
Data management Database management Transcriptomics FAIR data data management spatial transcriptomics -
Workshops and courses
Spatial transcriptomics in action: a case study from human reproductive development
8 April 2026 @ 09:00 - 17:00
Online
Transcriptomics RNA-Seq spatial transcriptomics spatial data transcriptomics -
Workshops and courses
Data-driven approaches to understanding dementia
13 - 17 April 2026
Online
Neurobiology Systems biology Machine learning Bioimaging -
Workshops and courses
Introduction to metabolomics analysis
27 April - 1 May 2026
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Systems biology: from large datasets to biological insight
11 - 15 May 2026
United Kingdom
Face-to-face
Systems biology Network analysis Machine learning Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
From sequences to structures: protein characterisation using EMBL-EBI APIs
2 June 2026 @ 09:00 - 17:00
Online
Sequence alignment Protein sequence analysis Structure prediction Workflow format Job Dispatcher UniProt: The Universal Protein Resource InterPro Protein Data Bank in Europe AlphaFold Database Proteins -
Workshops and courses
Data science for life scientists
15 - 19 June 2026
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Proteomics bioinformatics
6 - 10 July 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
Workshops and courses
Interpreting the effects of genetic variants on protein structure and function
26 November 2026 @ 09:00 - 17:00
Online
Variant effect prediction Protein structure Ensembl Ensembl Variant Effect Predictor UniProt: The Universal Protein Resource Protein Data Bank in Europe AlphaFold Database Genetic variants -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK
Activity log
