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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Course materials
Managing a bioinformatics core facility
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Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
-
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
-
e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
-
e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
-
e-learning
Metabolomics: An introduction
Metabolomics Small molecules Metabolites Metabolome
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Recorded webinar
Data visualisation at PDBe
Protein structure analysis
-
Course materials
Proteomics bioinformatics
-
Recorded webinar
Open with purpose: How and why to make your data open
Data management Data curation and archival
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Recorded webinar
Finding the data behind research articles with Europe PMC
Database management
-
Course materials
Systems biology: from large datasets to biological insight materials
-
e-learning
GWAS Catalog: Exploring SNP-trait associations
GWAS study GWAS Genome-wide association studies SNP-trait associations
-
e-learning
Pfam: Creating protein families
Protein structure analysis Protein sites, features and motifs Multiple sequence alignments Profile Hidden Markov models HMMs Protein families
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Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
e-learning
Biocuration: A curated set of EMBL-EBI online courses
Data curation and archival Database management Natural language processing Ontology and terminology Programmatic access Programming Text mining Biocuration Biocurators User experience …
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Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
-
e-learning
Exploring microbial ecosystems: A curated collection of EMBL-EBI on-demand training
Microbial ecology Microbiology Metagenomics Biodiversity Statistics and probability Open access microbiome microbial ecosystems
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Course materials
Introduction to RNA-seq and functional interpretation
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
-
Recorded webinar
Creating complex PDBe API queries
-
Recorded webinar
Integrating publications into bioinformatics analysis
Natural language processing
-
Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Recorded webinar
Ensembl gene annotation for clinical genomics
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Recorded webinar
Explore gene expression across species with Expression Atlas
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Recorded webinar
Open access: Data sharing and submission
Data quality management
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Workshops and courses
UniProt
2 October 2025 - 7 May 2026
Online
protein Function analysis Protein variants Annotation Sequence analysis UniProt: The Universal Protein Resource -
Workshops and courses
An introduction to EMBL-EBI resources
14 January 2026 @ 09:00 - 17:00
Online
Data Data resource definition name AlphaFold Database ChEMBL Ensembl MetaboLights: Metabolomics repository and reference database Protein Data Bank in Europe UniProt: The Universal Protein Resource data data resource bioinformatics -
Workshops and courses
Using UniProt for protein structure-function analysis
15 January 2026 @ 09:00 - 17:00
Online
UniProt ID UniProt accession UniProt: The Universal Protein Resource Uniprot Protein science Protein data -
Workshops and courses
Advanced search in UniProt and sequence analysis tools (BLAST and align)
22 January 2026 @ 09:00 - 17:00
Online
UniProt ID UniProt accession UniProt: The Universal Protein Resource UniProt Protein science BLAST Protein alignment -
Workshops and courses
Single-cell RNA-seq analysis with Python
2 - 6 February 2026
Online
-
Workshops and courses
Introduction to RNA-seq and functional interpretation
9 - 13 February 2026
Online
RNA-Seq analysis Function analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts -
Workshops and courses
Introduction to multi-omics data integration and visualisation
2 - 6 March 2026
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
16 - 20 March 2026
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Data-driven approaches to understanding dementia
13 - 17 April 2026
United Kingdom
Face-to-face
Neurobiology Systems biology Machine learning Bioimaging -
Workshops and courses
Introduction to metabolomics analysis
27 April - 1 May 2026
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Systems biology: from large datasets to biological insight
11 - 15 May 2026
United Kingdom
Face-to-face
Systems biology Network analysis Machine learning Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
From sequences to structures: protein characterisation using EMBL-EBI APIs
2 June 2026 @ 09:00 - 17:00
Online
Sequence alignment Protein sequence analysis Structure prediction Workflow format Job Dispatcher UniProt: The Universal Protein Resource InterPro Protein Data Bank in Europe AlphaFold Database Proteins -
Workshops and courses
Data science for life scientists
15 - 19 June 2026
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Proteomics bioinformatics
6 - 10 July 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
Workshops and courses
Interpreting the effects of genetic variants on protein structure and function
26 November 2026 @ 09:00 - 17:00
Online
Variant effect prediction Protein structure Ensembl Ensembl Variant Effect Predictor UniProt: The Universal Protein Resource Protein Data Bank in Europe AlphaFold Database Genetic variants -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK
Activity log
