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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
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Course materials
Proteomics bioinformatics
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
-
e-learning
Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training
Omics Data visualisation Genomics Proteomics Metabolomics Transcriptomics Spatial omics multi-omics data integration transcriptomics
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
-
e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
-
Recorded webinar
The future of preprint peer review
Literature and language
-
e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
-
e-learning
MGnify: Quick tour
Metagenomics Metatranscriptomics Microbiology Small molecules Metabolites Metabolome
-
e-learning
PRIDE: Quick tour
Proteomics experiment Protein modifications Proteomics identifications ProteomeXchange Peptide identifications Post-translational modifications PTMs
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Course materials
Practical biocuration
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Recorded webinar
PsyArXiv preprints in Europe PMC
Literature and language
-
Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
-
Recorded webinar
Multi-omics comparative pathway analysis with ReactomeGSA
Omics
-
Recorded webinar
Using the PDBe graph API
-
Recorded webinar
MGnify API: accessing microbiome data computationally
Microbial ecology
-
e-learning
Bioinformatics for the terrified: An introduction to the science of bioinformatics
Bioinformatics Ontology and terminology Introduction Databases Metadata Controlled vocabularies Beginners New to bioinformatics field Basic
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Recorded webinar
Genomic features that regulate gene expression, with Ensembl
Gene expression Epigenetics Epigenomics
-
e-learning
Functional genomics II: Common technologies and data analysis methods
Functional genomics Gene expression RNA-Seq Microarray experiment Genotype and phenotype Next-generation sequencing NGS Real-time PCR Microarray Epigenetic modifications …
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Recorded webinar
How to interpret AlphaFold structures
Structural biology Structure analysis
-
e-learning
Reactome: Quick tour
Pathway database Systems biology Network analysis
-
e-learning
Biocuration: A curated set of EMBL-EBI online courses
Data curation and archival Database management Natural language processing Ontology and terminology Programmatic access Programming Text mining Biocuration Biocurators User experience …
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Course materials
Small molecule chemistry: from proteins to pathways: EMBL-EBI resources in practice
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Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
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Recorded webinar
Understanding proteomes
Proteins
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
-
Workshops and courses
Methods for infectious disease modelling using genomics
14 - 19 September 2025
United Kingdom
Face-to-face
Modelling and simulation Infectious disease Phylogenetic analysis Genomics Public health and epidemiology infectious diseases mathematical modelling genomics phylodynamics public health -
Workshops and courses
A guide to UniProt for students
2 October 2025 @ 09:00 - 17:00
Online
protein Protein sequence Protein function prediction Protein structure UniProt: The Universal Protein Resource proteins -
Workshops and courses
Metagenomics bioinformatics at MGnify
6 - 10 October 2025
United Kingdom
Face-to-face
Metagenomics Metagenomic sequencing Database search Strain resolution Functional analysis Metagenome-Assembled Genome (MAG) -
Workshops and courses
Computational Biology Training in Hematology 2025, Module 2
21 - 25 October 2025
France
Face-to-face
-
Workshops and courses
Structural bioinformatics
27 - 31 October 2025
Online
Structure analysis Protein folds and structural domains Structure prediction AlphaFold Database -
Workshops and courses
Chemicals in a biological context: metabolites, drugs, and beyond
13 November 2025 @ 09:00 - 17:00
Online
ChEMBL Protein Data Bank in Europe MetaboLights: Metabolomics repository and reference database -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
17 - 21 November 2025
United Kingdom
Face-to-face
-
Workshops and courses
Managing a bioinformatics core facility
8 - 10 December 2025
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Single-cell RNA-seq analysis with Python
2 - 6 February 2026
Online
-
Workshops and courses
Introduction to RNA-seq and functional interpretation
9 - 13 February 2026
Online
RNA-Seq analysis Function analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts -
Workshops and courses
Introduction to multi-omics data integration and visualisation
2 - 6 March 2026
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
16 - 20 March 2026
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Data-driven approaches to understanding dementia
13 - 17 April 2026
United Kingdom
Face-to-face
-
Workshops and courses
Introduction to metabolomics analysis
27 April - 1 May 2026
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Systems biology: from large datasets to biological insight
11 - 15 May 2026
United Kingdom
Face-to-face
Systems biology Network analysis Machine learning Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
From sequences to structures: Protein characterisation using EMBL-EBI APIs
2 June 2026 @ 09:00 - 17:00
Online
Sequence alignment Protein sequence analysis Structure prediction Workflow format Job Dispatcher UniProt: The Universal Protein Resource InterPro Protein Data Bank in Europe AlphaFold Database Proteins -
Workshops and courses
Data science for life scientists
15 - 19 June 2026
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Proteomics bioinformatics
6 - 10 July 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK
Activity log
