European Bioinformatics Institute (EBI)
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
PhenoMeNal (Phenome and Metabolome aNalysis) is a standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications. This course will give you an overview of PhenoMeNal, how to create your cloud research...
Scientific topics: Chemical biology, Metabolomics
Keywords: Galaxy
PDBe: Exploring a Protein Data Bank (PDB) entry from http://www.ebi.ac.uk/training/online/course/pdbe-exploring-protein-data-bank-pdb-entry.
Keywords: Proteins, Chemical biology, Structures
Complex Portal: webinar from http://www.ebi.ac.uk/training/online/course/complex-portal-webinar.
Keywords: Systems, Ontologies, Proteins, Structures
EBI: Next Generation Sequencing Practical Course from http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course.
Scientific topics: Sequencing
Keywords: DNA RNA, Gene Expression
Biomedical data: Ethical, legal and social implications from http://www.ebi.ac.uk/training/online/course/biomedical-data-ethical-legal-and-social-implicati.
Keywords: Cross domain
BioModels Database: Quick tour from http://www.ebi.ac.uk/training/online/course/biomodels-database-quick-tour.
Keywords: Systems
Cellular Microscopy Phenotype Ontology (CMPO): Quick tour from http://www.ebi.ac.uk/training/online/course/cellular-microscopy-phenotype-ontology-cmpo-quick.
Keywords: Ontologies, Cross domain
ChEBI: Quick tour from http://www.ebi.ac.uk/training/online/course/chebi-quick-tour.
Keywords: Chemical biology
DGVa: Quick tour from http://www.ebi.ac.uk/training/online/course/dgva-quick-tour.
Keywords: DNA RNA
EBI Metagenomics portal: Submitting metagenomics data to the European Nucleotide Archive from http://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da.
Keywords: DNA RNA
Enzyme Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/enzyme-portal-quick-tour-0.
Keywords: Proteins, Chemical biology
European Nucleotide Archive: Quick tour from http://www.ebi.ac.uk/training/online/course/european-nucleotide-archive-quick-tour.
Keywords: DNA RNA
Genomics resources: webinar from http://www.ebi.ac.uk/training/online/course/resources-genomics-webinar.
Keywords: DNA RNA
PDBe: Quick tour from http://www.ebi.ac.uk/training/online/course/pdbe-quick-tour.
Keywords: Proteins, Structures
EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets...
Scientific topics: Metagenomics
Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology
Resource type: Webinar
This quick tour provides a brief introduction to MGnify - a free resource for analysis, visualisation and discovery of microbiome (metagenomic, metatranscriptomic, amplicon and assembly) datasets.
This course is suitable those with an undergraduate degree in a life science subject would be an...
Scientific topics: Metagenomics
Keywords: Metagenomics, Sequence analysis, MGnify, Microbiology
Resource type: Tutorial
ChEMBL: Quick tour from http://www.ebi.ac.uk/training/online/course/chembl-quick-tour.
Keywords: Chemical biology
Complex Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/complex-portal-quick-tour.
Keywords: Systems, Ontologies, Proteins, Structures
BioSamples: Quick tour from http://www.ebi.ac.uk/training/online/course/biosamples-quick-tour.
Keywords: DNA RNA, Gene Expression, Ontologies, Proteins
EBI Metagenomics portal: Quick tour from http://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour.
Scientific topics: Metagenomics
Keywords: DNA RNA
PRIDE and ProteomeXchange: webinar from http://www.ebi.ac.uk/training/online/course/pride-and-proteomexchange-webinar, added automatically.
Keywords: Proteins
Literature search is an essential and routine task in scientific research. Following the release of the new Europe PMC website, this webinar will show you the new full-text searching and browsing features built to optimise the literature research. Learn how to find the most recent, most relevant...
Keywords: Literature search, Data links, preprints
Resource type: Life Sciences Literature Database
Expression Atlas: Quick tour from http://www.ebi.ac.uk/training/online/course/expression-atlas-quick-tour-0.
Keywords: Gene Expression
PDBeChem: Searching for small molecules and small molecule fragments from http://www.ebi.ac.uk/training/online/course/pdbechem-searching-small-molecules-and-small-molec.
Scientific topics: Small molecules
Keywords: Proteins, Chemical biology, Structures
PDBeFold: Searching for structural homologues of a protein from http://www.ebi.ac.uk/training/online/course/pdbefold-searching-structural-homologues-protein, added automatically.
Keywords: Proteins, Structures
PDBePISA: Identifying and interpreting the likely biological assemblies of a protein structure from http://www.ebi.ac.uk/training/online/course/pdbepisa-identifying-and-interpreting-likely-biolo, added automatically.
Keywords: Proteins, Structures
This quick tour provides an overview of EMBL-EBI’s functional genomics database ArrayExpress.
This course was updated in December 2015.
An undergraduate-level understanding of biology is an advantage. You may wish to have a look at our Functional genomics: An introduction to EMBL-EBI...
Scientific topics: Gene expression, Gene expression and microarray, Functional genomics
Keywords: Gene Expression
Phylogenetics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-phylogenetics, added automatically.
Scientific topics: Phylogenetics
Keywords: DNA RNA
ChEBI: The online chemical dictionary for small molecules from http://www.ebi.ac.uk/training/online/course/chebi-online-chemical-dictionary-small-molecules.
Scientific topics: Small molecules
Keywords: Chemical biology
EMBO Practical Course on Analysis of High-Throughput Sequencing Data from http://www.ebi.ac.uk/training/online/course/embo-practical-course-analysis-high-throughput-seq.
Keywords: Gene Expression
European Nucleotide Archive (ENA): An introduction: webinar from http://www.ebi.ac.uk/training/online/course/european-nucleotide-archive-ena-introduction-webin.
Keywords: DNA RNA
Biocuration: An introduction from http://www.ebi.ac.uk/training/online/course/biocuration-introduction.
Keywords: Proteins, Cross domain
Biomacromolecular structures: An introduction to EMBL-EBI resources from http://www.ebi.ac.uk/training/online/course/biomacromolecular-structures-introduction-ebi-reso.
Keywords: Proteins
BioSamples Database RDF: webinar from http://www.ebi.ac.uk/training/online/course/biosamples-database-rdf-webinar.
Keywords: DNA RNA, Gene Expression, Ontologies, Proteins
diXa data warehouse: Exploring data from toxicogenomics studies from http://www.ebi.ac.uk/training/online/course/dixa-data-warehouse-exploring-data-toxicogenomics.
Keywords: Gene Expression, Ontologies, Chemical biology
ChEMBL walkthrough: webinar from http://www.ebi.ac.uk/training/online/course/chembl-walkthrough-webinar.
Keywords: Chemical biology
ChEMBL: Exploring bioactive drug-like molecules from http://www.ebi.ac.uk/training/online/course/chembl-exploring-bioactive-drug-molecules.
Keywords: Chemical biology, Structures
Ensembl: Quick tour from http://www.ebi.ac.uk/training/online/course/ensembl-quick-tour-0.
Keywords: DNA RNA
EMBL-EBI resources: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-embl-ebi-resources-webinar.
Keywords: Cross domain
Ensembl browser webinar series (2016) from http://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016.
Keywords: DNA RNA
Ensembl tools: webinar from http://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar.
Keywords: DNA RNA
Ensembl Genomes (non-chordates): Quick tour from http://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour.
Keywords: DNA RNA
Ensembl Variant Effect Predictor (VEP): webinar from http://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar.
Keywords: DNA RNA
Ensembl: Browsing chordate genomes from http://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes.
Keywords: DNA RNA
Ensembl: Filmed API workshop from http://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop.
Keywords: DNA RNA
Ensembl: Filmed browser workshop from http://www.ebi.ac.uk/training/online/course/ensembl-filmed-browser-workshop.
Keywords: DNA RNA
Europe PMC: Quick tour from http://www.ebi.ac.uk/training/online/course/europe-pmc-quick-tour-0.
Keywords: Literature
InterPro: Functional and structural analysis of protein sequences from http://www.ebi.ac.uk/training/online/course/interpro-functional-and-structural-analysis-protei.
Keywords: Proteins
myChEMBL: webinar from http://www.ebi.ac.uk/training/online/course/mychembl-webinar.
Keywords: Chemical biology
Functional genomics: An introduction to EMBL-EBI resources from http://www.ebi.ac.uk/training/online/course/functional-genomics-introduction-embl-ebi-resource-1.
Keywords: Gene Expression
European Nucleotide Archive: Using the primary nucleotide sequence resource from http://www.ebi.ac.uk/training/online/course/european-nucleotide-archive-using-primary-nucleoti.
Keywords: DNA RNA
Genomics: An introduction to EMBL-EBI resources from http://www.ebi.ac.uk/training/online/course/genomics-introduction-ebi-resources.
Keywords: DNA RNA
InterPro: Quick tour from http://www.ebi.ac.uk/training/online/course/interpro-quick-tour.
Keywords: Proteins
IMPC: Using the mouse phenotyping portal from http://www.ebi.ac.uk/training/online/course/impc-using-mouse-phenotyping-portal.
Keywords: Systems, Ontologies
IntAct: Molecular interactions at EMBL-EBI from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-ebi.
Keywords: Systems, Proteins
IntAct: Quick tour from http://www.ebi.ac.uk/training/online/course/intact-quick-tour.
Keywords: Systems, Proteins
IntAct: The molecular interactions database at EMBL-EBI: webinar from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-database-embl-ebi-we.
Keywords: Systems, Proteins
Locus Reference Genomic (LRG) resource: webinar from http://www.ebi.ac.uk/training/online/course/locus-reference-genomic-lrg-resource-webinar.
Keywords: DNA RNA
MetaboLights: Quick tour from http://www.ebi.ac.uk/training/online/course/metabolights-quick-tour-0.
Keywords: Systems, Chemical biology
Metabolomics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-metabolomics.
Keywords: Systems, Chemical biology
PDBe: An introduction to search and entry pages: webinar from http://www.ebi.ac.uk/training/online/course/pdbe-introduction-search-and-entry-pages-webinar.
Keywords: Proteins, Chemical biology, Structures
PDBe: Searching the Protein Data Bank from http://www.ebi.ac.uk/training/online/course/pdbe-searching-protein-data-bank.
Keywords: Proteins, Chemical biology, Structures
ArrayExpress: Discover functional genomics data quickly and easily from http://www.ebi.ac.uk/training/online/course/arrayexpress-discover-functional-genomics-data-qui.
Keywords: Gene Expression
Computational chemistry in drug discovery from http://www.ebi.ac.uk/training/online/course/computational-chemistry-drug-discovery.
Keywords: Chemical biology
Drug repurposing from http://www.ebi.ac.uk/training/online/course/drug-repurposing.
Keywords: Chemical biology
Druggability and the druggable genome from http://www.ebi.ac.uk/training/online/course/druggability-and-druggable-genome.
Keywords: Chemical biology
PDBe: Searching for biological macromolecular structures from http://www.ebi.ac.uk/training/online/course/pdbe-searching-biological-macromolecular-structure.
Keywords: Proteins, Chemical biology, Structures
Bioinformatics for the terrified from http://www.ebi.ac.uk/training/online/course/bioinformatics-terrified.
Keywords: Cross domain
Functional genomics (III): Submitting your data and functional genomics databases from http://www.ebi.ac.uk/training/online/course/functional-genomics-iii-submitting-your-data-and-f.
Keywords: Gene Expression
Functional genomics (I): Introduction and designing experiments from http://www.ebi.ac.uk/training/online/course/functional-genomics-i-introduction-and-designing-e.
Keywords: Gene Expression
Functional genomics (II): Common technologies and data analysis methods from http://www.ebi.ac.uk/training/online/course/functional-genomics-ii-common-technologies-and-dat.
Keywords: Gene Expression
EMBL-EBI presents this talk on an introduction to text mining and its applications in service provision. The 1st part of this talk focuses on what text mining is and some of the methods and available tools. The 2nd part looks at how to find articles on Europe PMC - a free literature resource for...
Keywords: Literature search, Text mining, Europe PMC, Biomedical Literature
Resource type: Webinar
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Microscopy data analysis: machine learning and the BioImage Archive
22 - 26 May 2023
United Kingdom
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Croupier, an user-centric meta-orchestrator for cross-platform workflow delivery and execution
15 November 2022
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Data protection and security aspects of running simulations on personal data with HPC
11 October 2022
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Introduction to multiomics data integration and visualisation
6 - 10 March 2023
United Kingdom
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A guide to UniProt for students
27 October 2022
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Genome-resolved metagenomics bioinformatics
31 October - 4 November 2022
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Structural bioinformatics
17 - 21 October 2022
United Kingdom
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Introductory bioinformatics Q&A session: proteins and structures
12 October 2022
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Bioinformatics resources for protein biology
24 - 28 April 2023
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Summer school in bioinformatics
12 - 16 June 2023
United Kingdom
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Data visualisation for biology
8 - 12 May 2023
United Kingdom
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Genome bioinformatics: resequencing and variant calling
14 - 18 November 2022
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Bioinformatics approaches to viruses
17 - 21 October 2022
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Using fish models to explore the impact of Gene by Environment (GxE) 2022
17 - 18 October 2022
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Introduction to metabolomics analysis
28 - 31 March 2023
United Kingdom
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Genome bioinformatics: resequencing and variant calling
20 - 24 November 2023
United Kingdom
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Bioinformatics for principal investigators
19 - 21 June 2023
United Kingdom
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Exploring human genetic variation
21 - 30 March 2023
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Cancer genomics
10 - 14 July 2023
United Kingdom
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Managing a bioinformatics core facility
23 - 25 November 2022
United Kingdom
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Single-cell RNA-seq analysis using Python
18 - 22 September 2023
United Kingdom
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Proteomics bioinformatics
3 - 7 July 2023
United Kingdom
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EuroFAANG GENE-SWitCH workshop: Utilisation of GENE-SWitCH data in Ensembl and beyond
31 January - 1 February 2023
United Kingdom
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Structural bioinformatics
2 - 6 October 2023
United Kingdom
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Metagenomics bioinformatics
30 October - 3 November 2023
United Kingdom
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Systems biology: from large datasets to biological insight
23 - 27 October 2023
United Kingdom
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Introduction to RNA-seq and functional interpretation
20 - 24 February 2023
United Kingdom
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Managing a bioinformatics core facility
19 - 21 June 2023
United Kingdom
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Single-cell RNA-seq analysis using Galaxy
6 - 10 February 2023
United Kingdom
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Practical biocuration
16 - 18 May 2023
United Kingdom
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PerMedCoE summer school: from pathway modelling tools to cell-level simulations
25 - 30 June 2023
