A common framework for designing portable federated pipelines

This video describes a common framework for designing portable federated pipelines. The joint cohort genotyping pipeline is provided as a specific implementation example. The ability of the pipeline to run in different environments, accessing the data via different protocols, and applying the appropriate normalisations is demonstrated.

Extensive documentation can be found in this github repository: https://github.com/CINECA-project/wp4-federated-joint-cohort-analysis/tree/master/4.3-pipelines/demonstrators/4.3.1-genotyping

Scientific topics: Data architecture, analysis and design

Keywords: data access, federated data analysis

Resource type: Video

Difficulty level: Intermediate

Licence: Creative Commons Attribution-NonCommercial-Share-Alike 4.0

Authors: Kirill Tsukanov

Contributors: Alvaro Gonzalez

A common framework for designing portable federated pipelines https://tess.elixir-europe.org/materials/a-common-framework-for-designing-portable-federated-pipelines This video describes a common framework for designing portable federated pipelines Alvaro Gonzalez Data architecture, analysis and design data access, federated data analysis