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Tutorial, Training materials, Bioinformatics
How to use REPET software for de novo annotation of transposable elements in genomes
• beginnerGenomics Structural variation Bioinformatics Genome annotation Sequence classification Transposons Annotation Pipelines Docker -
Slides
Helis Academy - FAIRify your data
linked data Wikidata data management
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Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
tutorial
Introduction to Markdown in R — CfRR
CfRR Introduction to Markdown in R programming reproducible research scientific computing
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tutorial
Computational Thinking — CfRR
CfRR Computational Thinking programming reproducible research scientific computing
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tutorial
Improve Your R Code — CfRR
CfRR Improve Your R Code programming reproducible research scientific computing
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tutorial
Intermediate Regression Analysis with R — CfRR
CfRR Intermediate Regression Analysis with R programming reproducible research scientific computing
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tutorial
Intermediate Version Control — CfRR
CfRR Intermediate Version Control programming reproducible research scientific computing
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tutorial
Introductory Regression Analysis with R — CfRR
CfRR Introductory Regression Analysis with R programming reproducible research scientific computing
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tutorial
Introduction to GPUs — CfRR
CfRR Introduction to GPUs programming reproducible research scientific computing
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tutorial
Introduction to HPC — CfRR
CfRR Introduction to HPC programming reproducible research scientific computing
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tutorial
Introduction to Julia — CfRR
CfRR Introduction to Julia programming reproducible research scientific computing
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tutorial
Introduction to Python — CfRR
CfRR Introduction to Python programming reproducible research scientific computing
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tutorial
Introduction to R — CfRR
CfRR Introduction to R programming reproducible research scientific computing
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tutorial
Introduction to Unix — CfRR
CfRR Introduction to Unix programming reproducible research scientific computing
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tutorial
Introduction to Version Control — CfRR
CfRR Introduction to Version Control programming reproducible research scientific computing
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tutorial
Introduction to Machine Learning — CfRR
CfRR Introduction to Machine Learning programming reproducible research scientific computing
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tutorial
Markdown with Python — CfRR
CfRR Markdown with Python programming reproducible research scientific computing
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tutorial
Parallel Computing — CfRR
CfRR Parallel Computing programming reproducible research scientific computing
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tutorial
Python for Data Analysis — CfRR
CfRR Python for Data Analysis programming reproducible research scientific computing
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tutorial
Software Development Best Practices — CfRR
CfRR Software Development Best Practices programming reproducible research scientific computing
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tutorial
Working with Data in R — CfRR
CfRR Working with Data in R programming reproducible research scientific computing
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Presentation
Data management plans for secondary use of health data
• beginnerData management Data Management Plan -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
Genomics Bioinformatics e-learning bioinformatics FEGA Federated EGA ELIXIR-CONVERGE
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Video, Presentation
The essentials of DUO codes
Bioinformatics Genomics bioinformatics FEGA Federated EGA ELIXIR Converge
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Karel Berka and Marian Novotný - Alphafoldology - Machine Learning revolution in structural biology
Structure prediction Structural biology Machine learning AlphaFold Database (13181) Alphafold Structures (structures) protein-3D-structure
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Video
EGA Submitter Portal Tutorial
Bioinformatics Genomics FEGA Federated EGA ELIXIR Converge
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course materials, Training materials, Slides
Galaxy Proteomics workshop Prague 2018
Proteomics Galaxy training proteomics eLearning EeLP
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Training on integration of OpenID Connect services to ELIXIR AAI
•• intermediateAAI OpenID Connect Authentication -
Video
Introduction to Federated EGA, a resource for discovery and access of human data across national borders
• beginnerFEGA Federated EGA ELIXIR Converge
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RDMbites: REDCap
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn advanced functionalities of REDCap.
For watching the entire collection visit the [YouTube playlist]... -
Byte-sized RSE series
Byte-sized RSE (Research Software Engineering) is a series of short interactive tutorial sessions where you can learn key skills to improve how you write and manage your research software in just 1 hour. They provide opportunities to gain hands-on experience and to ask questions, in an informal...
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RDMbites: Equality, Diversity, Inclusion and Justice in RDM
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn the essentials of data management in the life sciences.
To watch the entire collection, visit the [YouTube... -
Single cell transcriptomics
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Data analysis using R for beginners
Training materials for learning how to use statistical libraries in R aimed at novices.
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RDMbites: Image data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn how to manage bioimage data.
For watching the entire collection visit the [YouTube playlist]... -
RDMbites: Sensitive data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn the essentials of managing sensitive data in the life sciences
For watching the entire collection visit the [YouTube... -
RDMbites: Sequencing data
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learnhow to manage sequencing data.
For watching the entire collection visit the [YouTube playlist]... -
RDMbites: Data management essentials
A collection of bites of content – short videos of less than 5 minutes – produced by ELIXIR-UK Fellows. You can navigate this content to learn the essentials of data management in the life sciences.
For watching the entire collection visit the [YouTube playlist]... -
Impact of research infrastructures
This Collection provides access to a range of impact-related materials and events that will be useful to those wishing to demonstrate and communicate the performance, impact, and ultimately public value of their research infrastructure.
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ELIXIR SIS-Containers - collection of training materials
Training resources (material and courses) on reproducible containers and workflows, providing a wide range of topics from design to implementation and deployment.
This collection has been compiled in the framework of the ELIXIR Strategic Implementation Study “[Making container services...
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ELIXIR Toxicology Community
Toxicology has been an active research field for many decades, with academic, industrial and government involvement. Modern omics and computational approaches are changing the field, from merely disease-specific observational models into target-specific predictive models.
Traditionally,...
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PINK project
Safe-and-Sustainable-by-Design (SSbD) advanced materials and chemicals (AdMas&Chems) are a central requirement for reaching the ambitious goal of making Europe the first digitally-enabled circular, climate-neutral and sustainable economy. Such new AdMas&Chems need to provide the high...
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VEIS - Value of the EGA for Industry and Society
This collection contains training materials developed during the training events of the RIS3CAT VEIS project.
The RIS3CAT VEIS project will create an open ecosystem of technologies that covers and adapts to the needs of analysis and interpretation of omic and clinical data in research and...
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ELIXIR Biodiversity Community
This is a curated collection of biodiversity-relevant training resources (e.g. Galaxy for Ecology initiative), including materials (aiming for FAIR and open materials) and trainings published and made accessible through TeSS, GTN, etc. and shared through the networks being mapped by activities...
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ELIXIR Federated Human Data Community
A collection of training resources generated for and by the ELIXIR Federated Human Data Community.
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msc medical microbiology fees
Discover the fascinating world of microorganisms with MMU Ambala's M.Sc https://www.mmambala.org/programmes/msc-medical-microbiology.php. Medical Microbiology program. This 3-years program integrates theoretical knowledge with practical skills in microbiological research and diagnostics.
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PHENotyping and EnviroTyping (PHENET training collection)
The PHENotypig and EnviroTyping Training Collection consolidates the training activities that have been designed-developed-delivered from the European HORIZON-INFRA-2022-TECH-01-01 (no.101094587), PHENET. The collection aim to capture knowledge and skills needed for researchers and...
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UNIVERSE-HPC project
UNIVERSE-HPC project is developing and piloting the curriculum and necessary course materials to underpin a professional training programme in RSE and HPC, supported by cohort- and community-building activities, acting as a knowledge integration...
5 training materialsUNIVERSE-HPC project https://excalibur.ac.uk/projects/universe-hpc/ https://tess.elixir-europe.org/content_providers/universe-hpc-project [UNIVERSE-HPC project](https://excalibur.ac.uk/projects/universe-hpc/) is developing and piloting the curriculum and necessary course materials to underpin a professional training programme in RSE and HPC, supported by cohort- and community-building activities, acting as a knowledge integration hub for those with a stake in education and training for RSEs, including other [ExCALIBUR projects](https://excalibur.ac.uk/projects), those extending Carpentries training for HPC and RSE, and existing and future initiatives in this area. The project brings together partners with expertise in training from different areas: Edinburgh (EPCC MSc in HPC and Edinburgh Carpentries), Oxford (SABS R3 CDT and RSE group), Southampton (research software engineering and Carpentries), and Imperial (community building and RSLondon). -
BioData.pt
BioData.pt is a distributed Research Infrastructure dedicated to data management in the fields of life and health sciences. It has the mission is to support the organisation and valorisation of biological data generated by research, clinical, and industrial activities in Portugal, through...
5 training materials3 events (41 past events)BioData.pt https://biodata.pt https://tess.elixir-europe.org/content_providers/biodata-pt BioData.pt is a distributed Research Infrastructure dedicated to data management in the fields of life and health sciences. It has the mission is to support the organisation and valorisation of biological data generated by research, clinical, and industrial activities in Portugal, through informatics, bioinformatics, and data management resources. Additionally, it is responsible for managing the Portuguese node of ELIXIR. /system/content_providers/images/000/000/806/original/BioDataPT_V.svg?1726234155 -
ELIXIR Portugal
ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part of the national biological information network, BioData.pt. Like ELIXIR itself, the Portuguese node is a decentralized network of specialized centers, under a common hardware and software...
18 training materials0 events (40 past events)ELIXIR Portugal https://elixir-portugal.org https://tess.elixir-europe.org/content_providers/elixir-portugal ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part of the national biological information network, BioData.pt. Like ELIXIR itself, the Portuguese node is a decentralized network of specialized centers, under a common hardware and software infrastructure, and with shared training and industry/entrepreneurship programmes. /system/content_providers/images/000/000/068/original/PT-0e669516dc5fb9386733dfbeb1c29c259c1131fcf64a34f0a085cbe97f3a53d7.svg?1726234035 -
Coding for Reproducible Research (CfRR)
Training materials on programming, reproducible research & scientific computing
19 training materialsCoding for Reproducible Research (CfRR) https://coding-for-reproducible-research.github.io/CfRR_Courses/home_page.html https://tess.elixir-europe.org/content_providers/coding-for-reproducible-research-cfrr Training materials on programming, reproducible research & scientific computing -
UCL Engineering
Our research is shaping the future of engineering - and of society. Find out more about the impact we make.
0 events (2 past events)UCL Engineering https://bit.ly/3OzH0Vu https://tess.elixir-europe.org/content_providers/ucl-engineering Our research is shaping the future of engineering - and of society. Find out more about the impact we make. /system/content_providers/images/000/000/646/original/UCL_logo.png?1658853660 -
Foundation for Research & Technology Hellas / Institute of Chemical Engineering Sciences (FORTH/ICE-HT)
0 events (1 past event)Foundation for Research & Technology Hellas / Institute of Chemical Engineering Sciences (FORTH/ICE-HT) http://www.iceht.forth.gr https://tess.elixir-europe.org/content_providers/foundation-for-research-technology-hellas-institute-of-chemical-engineering-sciences-forth-ice-ht /system/content_providers/images/000/000/634/original/FORTH-ICEHT_logo_Eng.JPG?1627482660 -
RiskGONE
0 events (1 past event)RiskGONE https://riskgone.eu/ https://tess.elixir-europe.org/content_providers/riskgone -
EOSC4Cancer
EOSC4Cancer will make diverse types of cancer data accessible: genomics, imaging, medical, clinical, environmental and socio-economic. It will use and enhance federated and interoperable systems for securely identifying, sharing, processing and reusing FAIR data across borders and offer them via...
1 training material0 events (1 past event)EOSC4Cancer https://eosc4cancer.eu/ https://tess.elixir-europe.org/content_providers/eosc4cancer EOSC4Cancer will make diverse types of cancer data accessible: genomics, imaging, medical, clinical, environmental and socio-economic. It will use and enhance federated and interoperable systems for securely identifying, sharing, processing and reusing FAIR data across borders and offer them via community-driven analysis environments. EOSC4Cancer’s well curated data sets will be essential input for reproducible and robust analytics and computational methods – including machine learning and artificial intelligence. EOSC4Cancer’s five use cases will cover the patient journey from cancer prevention over diagnosis to treatment, laying the foundation of data trajectories and workflows for future European Cancer Mission projects. /system/content_providers/images/000/000/747/original/Logo-eosc-cancer-RGB-horizontal-STANDARD.png?1711439233 -
NGS Registry
GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.
60 training materialsNGS Registry https://microasp.upsc.se/ngs_trainers/Materials/wikis/home https://tess.elixir-europe.org/content_providers/ngs-registry GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis. -
Health-RI
Health-RI mission is better health(care) for citizens and patients by reusing health data with an integrated health data infrastructure for research, policy and innovation.
1 training materialHealth-RI https://www.health-ri.nl/ https://tess.elixir-europe.org/content_providers/health-ri Health-RI mission is better health(care) for citizens and patients by reusing health data with an integrated health data infrastructure for research, policy and innovation. /system/content_providers/images/000/000/831/original/logo.svg?1764250783 -
ELXIR-UK DaSH
In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford.
The project aims to embed Research Data...
70 training materials0 events (6 past events)ELXIR-UK DaSH https://elixiruknode.org/projects/elixir-uk-dash/ https://tess.elixir-europe.org/content_providers/elxir-uk-dash In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford. The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources, such as the RDMkit and the FAIR Cookbook. It focuses on building capacity and professionalising data stewardship while leveraging the local expertise within diverse UK institutions – creating a data management culture change from within the institutions. /system/content_providers/images/000/000/652/original/elixir-uk-dash-logo.svg?1660752689 -
Royal Statistical Society
Royal Statistical Society is a world-leading organisation promoting the importance of statistics and data - and a professional body for all statisticians and data analysts.
422 events (16 past events)Royal Statistical Society https://www.statslife.org.uk/ https://tess.elixir-europe.org/content_providers/stats-life Royal Statistical Society is a world-leading organisation promoting the importance of statistics and data - and a professional body for all statisticians and data analysts. /system/content_providers/images/000/000/048/original/rss-strapline-logo-360x180.jpg?1469458222 -
Pattern Institute
Mission | The Pattern Institute is a nonprofit research organization dedicated to advancing scientific discovery, education, and outreach, with a particular emphasis on systems and complexity science. It applies mathematical and computational approaches to uncover patterns across the...
3 training materialsPattern Institute https://www.pattern.institute/training/ https://tess.elixir-europe.org/content_providers/pattern-institute **Mission** | The **Pattern Institute** is a nonprofit research organization dedicated to advancing scientific discovery, education, and outreach, with a particular emphasis on systems and complexity science. It applies mathematical and computational approaches to uncover patterns across the natural, formal, and social sciences. /system/content_providers/images/000/000/822/original/pi-logotype2.svg?1753360127 -
ELIXIR Norway
12 training materials0 events (27 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
ELIXIR: The Czech Republic Node
ELIXIR CZ is the Czech Republic node of ELIXIR. It joins universities (Masaryk University Brno, Palacký University Olomouc, Charles University, University of Chemistry and Technology, Czech Technical University, University of West Bohemia and University of South Bohemia), research institutes...
5 training materials3 events (34 past events)ELIXIR: The Czech Republic Node http://www.elixir-czech.cz https://tess.elixir-europe.org/content_providers/elixir-the-czech-republic-node ELIXIR CZ is the Czech Republic node of ELIXIR. It joins universities (Masaryk University Brno, Palacký University Olomouc, Charles University, University of Chemistry and Technology, Czech Technical University, University of West Bohemia and University of South Bohemia), research institutes (Czech Academy of Sciences, namely Institute of Organic Chemistry and Biochemistry, Institute of Molecular Genetics, Institute of Microbiology, Institute of Biotechnology and Biology Centre), IT infrastructures (CESNET) and University Hospital at Saint Anna in Brno. /system/content_providers/images/000/000/082/original/ELIXIR_CZECHREPUBLIC_white_background_small.png?1507879746 -
Centre for Genomic Regulation (CRG)
The CRG is an international biomedical research institute of excellence whose mission is to discover and advance knowledge for the benefit of society, public health and economic prosperity.
5 training materials0 events (2 past events)Centre for Genomic Regulation (CRG) https://www.crg.eu https://tess.elixir-europe.org/content_providers/centre-for-genomic-regulation-crg The CRG is an international biomedical research institute of excellence whose mission is to discover and advance knowledge for the benefit of society, public health and economic prosperity. /system/content_providers/images/000/000/647/original/LOGOs-CRG-ENG_2014.jpg?1659436926 -
University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH)
The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and...
0 events (2 past events)University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH) https://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/bbash https://tess.elixir-europe.org/content_providers/university-of-leicester-bioinformatics-and-biostatistics-analysis-support-hub-bbash The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and 3 day hands-on, NGS analysis workshops designed specificially to meet the needs of laboratory based researchers with little or no experience of NGS data analysis and command line tools. The workshops are held at the University of Leicester's state of the art College Court Conference Centre and consist of introductory presentations followed by practical sessions where delegates will gain hands-on experience of analysing and interpreting real data. The BBASH trainers are University of Leicester bioinformaticians or researchers with many years experience in bioinformatics and bioinformatics training, having delivered many workshops across the UK and Europe. /system/content_providers/images/000/000/086/original/BBASHlogo.png?1509536575 -
Biomedical Sciences Research Center "Alexander Fleming"
The Biomedical Sciences Research Center "Alexander Fleming" is a non-profit research organisation based in Vari, Athens, Greece.
Since the beginning of its operations in 1998, the Center develops basic as well as translational and applied research programs at the cutting edge of modern...
1 training materialBiomedical Sciences Research Center "Alexander Fleming" https://www.fleming.gr/ https://tess.elixir-europe.org/content_providers/biomedical-sciences-research-center-alexander-fleming The Biomedical Sciences Research Center "Alexander Fleming" is a non-profit research organisation based in Vari, Athens, Greece. Since the beginning of its operations in 1998, the Center develops basic as well as translational and applied research programs at the cutting edge of modern biomedical sciences. Currently, the Center hosts 14 research groups distributed in 4 Institutes (Immunology, Molecular Oncology, Molecular Biology and Genetics, Cellular & Developmental Biology). Over the short period since its establishment, BSRC "Alexander Fleming" has gained extensive visibility in the European science arena. Fleming researchers have established transgenic animal models for rheumatoid arthritis, inflammatory bowel disease and multiple sclerosis and these models have served as a basis for multiple collaborations with the international biopharmaceutical industry in the evaluation of novel therapeutic compounds, or as tools for collaborative R&D. The Center is equipped with state-of-the-art Core Units which include: an Expression Profiling Facility, a Flow Cytometry Facility, a Protein Chemistry Lab, a Transgenics and gene targeting Unit, and a BioIT Unit, all of which serve internal collaborations, as well as external partners in academia and industry. The Center also runs an Innovation and Enterprise Unit that facilitates the protection and exploitation of the Center’s research and technologies. Fleming operates its own Animal House, which can house up to 15,000 mice, and has its own complete mouse histopathology unit. Fleming’s Animal house (certified with ISO 9001) provides husbandry of animals and services to the biomedical research community since 2001. It covers an area of approximately 600 m2 within the Center and is equipped with highly automated systems that provide the best possible conditions for mouse reproduction and maintenance. Its main activity is the reproduction and maintenance of mice stocks either of inbred strains or genetically engineered mice, such as transgenic and knockout mouse lines, as well as chemically induced mutants developed by Fleming researchers. The Animal House has a capacity to house more than 18,000 mice and is currently the largest Mouse Unit in Greece in terms of number and variety of mice. The Facility became a full member of EMMA in 2009. Main areas of research: Functional genomics and proteomics; Molecular and cellular immunology; Animal models of human disease; Transcriptional and post-transcriptional mechanisms of gene regulation; DNA repair; Stem Cell differentiation; Epigenetics; Learning and memory; ECM biology. Fields of excellence: Molecular mechanisms of disease (inflammation, cancer, metabolic syndrome, CNS disorders). /system/content_providers/images/000/000/051/original/logo.png?1469458221 -
Novo Nordisk Foundation Center for Protein Research
Novo Nordisk Foundation Center for Protein Research was established in 2007 at the Faculty of Health and Medical Sciences, University of Copenhagen, to promote basic and applied discovery research on human proteins of medical relevance.
The...
3 training materialsNovo Nordisk Foundation Center for Protein Research http://www.cpr.ku.dk/ https://tess.elixir-europe.org/content_providers/novo-nordisk-foundation-center-for-protein-research Novo Nordisk Foundation Center for Protein Research was established in 2007 at the [Faculty of Health and Medical Sciences](http://healthsciences.ku.dk/), [University of Copenhagen](http://www.ku.dk/), to promote basic and applied discovery research on human proteins of medical relevance. The establishment of the center was made possible by a generous donation of 600 million DKK (~113 MUSD) from the [Novo Nordisk Foundation](http://www.novonordiskfonden.dk/en) as well as through significant contributions from the University of Copenhagen for the renovation of the center facilities. In the beginning of 2015 the Novo Nordisk Foundation donated additional 180 million DKK for the next funding period. /system/content_providers/images/000/000/088/original/cpr.png?1520154812 -
Seqera
Seqera is the driving force behind Nextflow, MultiQC, and the Seqera Platform - the modern biotech stack. Seqera empowers scientists to solve today's most complex and essential challenges; from pioneering innovative therapeutics to unveiling the secrets of our universe.
Across personalized...
1 training material0 events (1 past event)Seqera http://www.seqera.io https://tess.elixir-europe.org/content_providers/seqera-labs Seqera is the driving force behind Nextflow, MultiQC, and the Seqera Platform - the modern biotech stack. Seqera empowers scientists to solve today's most complex and essential challenges; from pioneering innovative therapeutics to unveiling the secrets of our universe. Across personalized immunogenic vaccines and new diagnostics, our customers are performing the most critical work on this planet. We believe in a future in which scientific tools and open datasets combine to deliver incredible outcomes. /system/content_providers/images/000/000/111/original/seqera_icon_color_darkbg.png?1762361061 -
NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology
NORBIS is the Norwegian research school in bioinformatics, biostatistics and systems biology, and was founded in 2015. The school is a collaboration between eight Norwegian universities, and aims to build and unite competences at a national level. We develop new courses, build educational tracks...
0 events (1 past event)NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology https://norbis.w.uib.no https://tess.elixir-europe.org/content_providers/norbis-the-norwegian-national-research-school-in-bioinformatics-biostatistics-and-systems-biology NORBIS is the Norwegian research school in bioinformatics, biostatistics and systems biology, and was founded in 2015. The school is a collaboration between eight Norwegian universities, and aims to build and unite competences at a national level. We develop new courses, build educational tracks and promote a new scientific community for our students. It is our aim that our graduate students will contribute strongly to methods development within the fields covered by the school, and that they will drive and contribute to the most important scientific projects in molecular life sciences in Norway and internationally. The NORBIS research school provides a high quality PhD education through its network of excellent research groups in Norway. We aim to educate method-oriented researchers, who in the next round will develop, teach, train, drive, and support use of bioinformatics, statistical genomics and computational biology within the wider area of molecular life science. /system/content_providers/images/000/000/098/original/400dpiLogo.jpg?1535006729 -
ELIXIR-SI eLearning Platform (EeLP)
ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia.
EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform.
6 training materials0 events (8 past events)ELIXIR-SI eLearning Platform (EeLP) https://elixir.mf.uni-lj.si/ https://tess.elixir-europe.org/content_providers/elixir-si-elearning-platfrom-eelp ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia. EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform. /system/content_providers/images/000/000/108/original/eelp-logo-with-slogan.jpg?1544007788 -
CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
OpenRiskNet
The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials.
OpenRiskNet is
* a virtual research environment for...0 events (10 past events)OpenRiskNet https://openrisknet.org/ https://tess.elixir-europe.org/content_providers/openrisknet The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is * a virtual research environment for predictive toxicology and chemical and nanomaterial risk assessment, * harmonising access to data and facilitating interoperability of software, * easily deployable to single computers, public and in-house cloud solutions, * addressing the needs of industry and academic researchers, risk assessors, regulators and informed public. OpenRiskNet (Grant Agreement 731075) is a 3-years project funded by the European Commission within the Horizon2020 Programme /system/content_providers/images/000/000/097/original/ORN-Web_Logo3.png?1533933310 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
Centre for Digital Life Norway
The Centre for Digital Life Norway (DLN) is a national centre for biotechnology research, education and innovation. It is run as a collaborative project by the University of Oslo (UiO), University of Bergen (UiB), and the Norwegian University of Science and Technology (NTNU), supported by the...
8 training materials0 events (20 past events)Centre for Digital Life Norway https://www.digitallifenorway.org/ https://tess.elixir-europe.org/content_providers/centre-for-digital-life-norway The Centre for Digital Life Norway (DLN) is a national centre for biotechnology research, education and innovation. It is run as a collaborative project by the University of Oslo (UiO), University of Bergen (UiB), and the Norwegian University of Science and Technology (NTNU), supported by the Research Council of Norway. The activity is organised as a leadership and network project, including a research school and research projects. The centre facilitates transdisciplinary collaboration across institutions and fields of research, and between the research projects. The host institutions of the research projects constitute the hub- and node-structure of the network. /system/content_providers/images/000/000/168/original/DLN_logo.png?1607439289 -
Cloud-SPAN
Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project:
- Prenomics
- Genomics
- Create your own AWS...1 training materialCloud-SPAN https://cloud-span.york.ac.uk/ https://tess.elixir-europe.org/content_providers/cloud-span Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project: - Prenomics - Genomics - Create your own AWS instance - Metagenomics - Statistically useful experimental design - Automation & pipelines (WIP) - Core R (WIP) /system/content_providers/images/000/000/658/original/cloud-span-logo-square.png?1666085149 -
ExCALIBUR
Exascale Computing ALgorithms & Infrastructures Benefiting UK Research (ExCALIBUR) is a UK research programme that aims to deliver the next generation of high-performance simulation software for the highest-priority fields in UK research. It started in October 2019 and...
1 training materialExCALIBUR https://excalibur.ac.uk/ https://tess.elixir-europe.org/content_providers/excalibur [Exascale Computing ALgorithms & Infrastructures Benefiting UK Research](https://excalibur.ac.uk/) (ExCALIBUR) is a UK research programme that aims to deliver the next generation of high-performance simulation software for the highest-priority fields in UK research. It started in October 2019 and will run through until March 2025, redesigning high priority computer codes and algorithms to meet the demands of both advancing technology and UK research. /system/content_providers/images/000/000/664/original/ExCALIBUR_Brand_20Logos_ExCALIBUR_Preview_Negative.jpg?1673340574 -
FAIRsharing
FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on...
1 training materialFAIRsharing https://www.fairsharing.org https://tess.elixir-europe.org/content_providers/fairsharing FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on FAIRsharing, you not only gain credit for your work, but you increase its visibility outside of your direct domain, so reducing the potential for unnecessary reinvention and proliferation of standards and databases. /system/content_providers/images/000/000/109/original/FAIRsharing_logo.png?1544089458 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
8 training materials0 events (10 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405