TeSS (Training eSupport System)

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Training on integration of services to ELIXIR AAI

•• intermediate
AAI authentication Shibboleth
course materials, Training materials, Slides, Video

RNA-seq data analysis using Chipster

Genomics Transcriptomics transcriptomics RNA-Seq eLearning EeLP
course materials, Training materials, Documentation

ELIXIR eLearning definitions

eLearning training EeLP
Video, Manual, Slides, Installation instructions

How to install and deploy Beacon

• beginner
Genomics genomics open access eLearning EeLP
Webinar, Presentation, Documentation

Integrating to ELIXIR AAI -- instructions for developers

•• intermediate
Computer science AAI IAM Authentication authorisation
Training materials, Video

GA4GH Passports and ELIXIR AAI

•• intermediate
AAI GA4GH Passports Auhtorisation
Series of videos, Video, youtube video

Introduction to research data management, data management planning and services provided by CSC – IT Center for Science

• beginner
DMP RDM plan research data management data management data management plan ELIXIR-CONVERGE CONVERGE
Tutorial

Tutorial on using MPI with containers

•• intermediate
MPI Containers Computer Programming Documentation and help
Tutorial

Tutorial on working with computing clusters

•• intermediate
HPC
Introduction to using containers - OpenShift, Kubernetes and Docker oriented view

• beginner
Containers Kubernetes Cloud computing
Course materials

Research Data Management -course

• beginner
RDM research data management data management CONVERGE
Tutorial, Video, Series of videos

Federated EGA: Introductory videos

• beginner
Federated EGA FEGA metadata ELIXIR-CONVERGE Phenotype SARS-CoV-2
Toolkit

ELIXIR’s Impact Toolkit, to support performance and impact evaluation in a distributed data research infrastructure for the life sciences

• beginner
Impact Research Infrastructure Monitoring Indicator Evaluation Sustainability
Video, course materials

Metagenomics data analysis

• beginner
Metagenomics
course materials, Video

RNA-seq data analysis

• beginner
RNA-Seq
course materials, Video

Virus detection using small RNA-seq

• beginner
RNA-Seq
course materials, Video

Community analysis of amplicon sequencing data (16S rRNA)

• beginner
course materials, Video

Single cell RNA-seq data analysis with Chipster

• beginner
RNA-Seq RNA-Seq Single Cell technologies scRNA-seq
course materials

Single-cell RNA-seq data analysis with R 2022

•• intermediate
RNA-Seq RNA-Seq Single Cell technologies scRNA-seq
Slides, course materials

Introduction to using cloud and containers for training - OpenStack and Docker oriented view

Cloud computing Containers
Slides, Training materials, Series of videos

Single-cell RNA-seq data analysis using Chipster 2022

• beginner
scRNA-seq
Detecting differentially expressed genes with RNA-seq 11.9.2019

RNA-Seq
Training materials, Series of videos

Visium data analysis (spatially resolved transcriptomics) 2022

spatially resolved transcriptomics

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CSC - IT Center for Science

CSC - IT Center for Science Ltd. is a non-profit, state-owned company administered by the Finnish Ministry of Education and Culture. CSC maintains and develops the state-owned centralised IT infrastructure and uses it to provide nationwide IT services for research, libraries, archives, museums...

14 training materials

14 events (131 past events)

CSC - IT Center for Science https://www.csc.fi https://tess.elixir-europe.org/content_providers/csc-it-center-for-science CSC - IT Center for Science Ltd. is a non-profit, state-owned company administered by the Finnish Ministry of Education and Culture. CSC maintains and develops the state-owned centralised IT infrastructure and uses it to provide nationwide IT services for research, libraries, archives, museums and culture as well as information, education and research management. CSC has the task of promoting the operational framework of Finnish research, education, culture and administration. As a non-profit, government organisation, it is our duty to foster exemplary transparency, honesty and responsibility. Trust is the foundation of CSC's success. Customers, suppliers, owners and personnel alike must feel certain that we will fulfil our commitments and promises in an ethically sustainable manner. CSC has offices in Espoo's Keilaniemi and in the Renforsin Ranta business park in Kajaani. /system/content_providers/images/000/000/016/original/c65ddc42-63fc-44da-8d0f-9f88c54779d7?1469458451

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ELIXIR node

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Status

Training coordinators

Training on integration of services to ELIXIR AAI

RNA-seq data analysis using Chipster

ELIXIR eLearning definitions

How to install and deploy Beacon

Integrating to ELIXIR AAI -- instructions for developers

GA4GH Passports and ELIXIR AAI

Introduction to research data management, data management planning and services provided by CSC – IT Center for Science

Tutorial on using MPI with containers

Tutorial on working with computing clusters

Introduction to using containers - OpenShift, Kubernetes and Docker oriented view

Research Data Management -course

Federated EGA: Introductory videos

ELIXIR’s Impact Toolkit, to support performance and impact evaluation in a distributed data research infrastructure for the life sciences

Metagenomics data analysis

RNA-seq data analysis

Virus detection using small RNA-seq

Community analysis of amplicon sequencing data (16S rRNA)

Single cell RNA-seq data analysis with Chipster

Single-cell RNA-seq data analysis with R 2022

Introduction to using cloud and containers for training - OpenStack and Docker oriented view

Single-cell RNA-seq data analysis using Chipster 2022

Detecting differentially expressed genes with RNA-seq 11.9.2019

Visium data analysis (spatially resolved transcriptomics) 2022

Portable GPU Programming

MOOC: Single-cell RNA-seq data analysis using Chipster

CSC/Pawsey GPU Hackathon

Data Analysis with R

Enhancing Data Support: Understanding Reproducibility, Part 1

Enhancing Data Support: Practical Reproducibility, Part 2

CodeRefinery workshop

MOOC: Spatially resolved transcriptomics with Chipster

Online: Using Containers in Supercomputing Environment

High Performance R

CSC Computing Environment, Part 1: Basics

CSC Computing Environment, Part 2: Next steps

Quantum Machine Learning

Practical Deep Learning

CSC - IT Center for Science