Training materials
Target audience: Students
and Contributors: Andrea Argentini or Belinda Phipson or Clemens Blank or David Bouyssié or Eija Korpelainen or Kenza Bazi-Kabbaj or Workflow4Metabolomics core team
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hands-on tutorial
Evaluating and ranking a set of pathways based on multiple metrics
• beginnerSynthetic biology Synthetic Biology -
hands-on tutorial
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools
• beginnerSynthetic biology Synthetic Biology -
hands-on tutorial
Designing plasmids encoding predicted pathways by using the BASIC assembly method
• beginnerSynthetic biology Synthetic Biology -
hands-on tutorial
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
hands-on tutorial
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse -
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
hands-on tutorial
Metaproteomics tutorial
• beginnerProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS data processing
• beginnerMetabolomics
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