e-learning

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

Abstract

Galaxy-SynBioCAD portal is the first toolshed for synthetic biology, metabolic engineering, and industrial biotechnology. It provides a set of Retrosynthesis tools aimed at finding pathways to synthesize heterologous compounds in chassis organisms (RetroRules, RetroPath2.0, RP2Paths, rpCompletion).

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • Which heterologous pathways are candidates to produce a compound in a chassis?

Learning Objectives

  • Define what data are required to run RetroSynthesis analysis.
  • Understanding how to run the tools to search heterologous pathways.

Licence: Creative Commons Attribution 4.0 International

Keywords: Synthetic Biology

Target audience: Students

Resource type: e-learning

Version: 8

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Define what data are required to run RetroSynthesis analysis.
  • Understanding how to run the tools to search heterologous pathways.

Date modified: 2024-06-14

Date published: 2022-06-23

Authors: Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon, Joan Hérisson, Kenza Bazi-Kabbaj, Thomas Duigou

Contributors: Cristóbal Gallardo, Saskia Hiltemann

Scientific topics: Synthetic biology

External resources:

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