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Workshops and courses
Life Science RDM course (For institutions in Norway)
6 October - 10 November 2023
Online
Data management Data submission, annotation, and curation Data handling Deposition DMP tools Data Stewardship Wizard data stewardship Metadata Ontologies Identifiers Galaxy NeLS ELSI storage
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
slides
Slides for 'Galaxy workflows in Dockstore' tutorial
galaxy-interface
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slides
Slides for 'Getting data into Galaxy' tutorial
galaxy-interface
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slides
Slides for 'Submitting SARS-CoV-2 sequences to ENA' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Understanding Galaxy history system' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Searching Your History' tutorial
• beginnergalaxy-interface -
hands-on tutorial
Hands-on for 'Name tags for following complex histories' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Use Jupyter notebooks in Galaxy' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'InterMine integration with Galaxy' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Group tags for complex experimental designs' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Downloading and Deleting Data in Galaxy' tutorial
• beginnergalaxy-interface -
hands-on tutorial
Hands-on for 'Using Workflow Parameters' tutorial
•• intermediategalaxy-interface workflows -
hands-on tutorial
Hands-on for 'Using dataset collections' tutorial
•• intermediategalaxy-interface collections -
hands-on tutorial
Hands-on for 'Creating, Editing and Importing Galaxy Workflows' tutorial
•• intermediategalaxy-interface workflows -
hands-on tutorial
Hands-on for 'Submitting sequence data to ENA' tutorial
•• intermediategalaxy-interface covid19 -
hands-on tutorial
Hands-on for 'Extracting Workflows from Histories' tutorial
galaxy-interface workflows
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hands-on tutorial
Hands-on for 'Workflow Reports' tutorial
•• intermediategalaxy-interface workflows -
slides
Slides for 'Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2' tutorial
galaxy-interface ncbi covid19
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hands-on tutorial
Hands-on for 'Rule Based Uploader' tutorial
•• intermediategalaxy-interface collections tags -
hands-on tutorial
Hands-on for 'RStudio in Galaxy' tutorial
galaxy-interface interactive-tools
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hands-on tutorial
Hands-on for 'SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis' tutorial
galaxy-interface ncbi covid19
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hands-on tutorial
Hands-on for 'Rule Based Uploader: Advanced' tutorial
••• advancedgalaxy-interface collections tags -
hands-on tutorial
Hands-on for 'JupyterLab in Galaxy' tutorial
galaxy-interface interactive-tools
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course materials, Training materials, Slides
ELIXIR TtR course: Basic genomics using advanced analysis tools
• beginnerGenomics Galaxy training eLearning EeLP -
course materials, Training materials, Slides
Galaxy Proteomics workshop Prague 2018
Proteomics Galaxy training proteomics eLearning EeLP
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WEBINAR: Managing hands-on data analysis training with Galaxy
Bioinformatics Galaxy Training Training infrastructure
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WORKSHOP: Translating workflows into Nextflow with Janis
Bioinformatics Workflows Nextflow CWL Galaxy
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WEBINAR: Here's one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia
Bioinformatics Workflows FAIR Galaxy Australia
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WORKSHOP: Online data analysis for biologists
Bioinformatics Analysis Workflows Galaxy Australia
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Galaxy Project
There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way.
0 events (536 past events)Galaxy Project https://galaxyproject.org/events https://tess.elixir-europe.org/content_providers/galaxy-project There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way. /system/content_providers/images/000/000/094/original/galaxyproject.png?1530281075 -
ELIXIR Norway
2 training materials0 events (15 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557 -
Galaxy Training
GitHub repository and its website companion containing a collection of training materials for teaching next generation sequencing data analysis uing Galaxy.
549 training materials0 events (7 past events)Galaxy Training http://galaxyproject.github.io/training-material https://tess.elixir-europe.org/content_providers/galaxy-training GitHub repository and its website companion containing a collection of training materials for teaching next generation sequencing data analysis uing Galaxy. /system/content_providers/images/000/000/078/original/GTNLogo1000.png?1501677361