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e-learning

NCBI BLAST+ against the MAdLand

• beginner
Sequence analysis plants
e-learning

Converting NCBI Data to the AnnData Format

• beginner
Single Cell data import data management
e-learning

Screening assembled genomes for contamination using NCBI FCS

• beginner
Sequence analysis
e-learning

From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

• beginner
Genetic variation Variant Analysis covid19 one-health virology
slides

Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2

• beginner
Using Galaxy and Managing your Data covid19 ncbi
e-learning

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

• beginner
Using Galaxy and Managing your Data covid19 ncbi
Bioinformatics: Gene-protein-structure-function

Expert systems Genequiz Protein family characterisation Protein family databases Protein sequence analysis Psi blast
Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists

Gene lists Gene ontology
Pathway and Network Analysis 2014 Module 3 - Gene Regulation Analysis

Pattern discovery Transcriptional regulation
Pathway and Network Analysis 2014 Module 6 - Gene Function Prediction

Functional association networks Gene function prediction Genemania
Introduction to Biopython

Bioinformatics Biopython Programming Python Python biologists
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Recorded webinar

Accessing sequence analysis tools via the new Job Dispatcher website
Recorded webinar

A guide to Job Dispatcher sequence analysis tools and programmatic access

Sequence analysis
Recorded webinar

Ensembl gene annotation for clinical genomics
e-learning

Dataset construction for bacterial comparative genomics

• beginner
Genomics Microbiology Genome Annotation microgalaxy work-in-progress
Access Bioinformatics Databases with Biopython

data-science life-sciences data-analysis health-informatics
Similarity searching, multiple sequence alignment and protein families - undergraduate lab

Blast Hmmer Interpro Multiple sequence alignment Similarity searching
Sequence comparison - undergraduate lab

Dotmatrix plots Scoring matrices Sequence alignment
video

RDMbites | High-throughput sequencing data repositories

data management RDM
scripts, examples

Using OpenCloning to automate the planning and documentation of cloning and genome engineering via python scripting

•• intermediate
Synthetic biology Metabolic engineering Molecular biology Genetic engineering Genetic Engineering
e-learning

Secondary metabolite discovery

• beginner
Genomics Genome Annotation
e-learning

Genome annotation with Funannotate

•• intermediate
Genomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1
e-learning, Video, Webinar

Using OpenCloning, an Open-Source web application to plan and document cloning and genome engineering

• beginner
Genetic engineering Molecular biology Synthetic biology Metabolic engineering Genetics web application Genetic Engineering genome engineering
e-learning

Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates

•• intermediate
Genetic variation Variant Analysis
Plant Bioinformatics Capstone

physical-science-and-engineering life-sciences research-methods basic-science
Plant Bioinformatics

life-sciences physical-science-and-engineering health-informatics research-methods
Submitting, Finding and Downloading Raw Sequencing Data with ENA

• beginner
FAIR data Metadata Data submission
GTN Smörgåsbord 3: OneHealth - Building a pathogen surveillance system with Galaxy - An automated SARS-CoV-2 genome surveillance system built around Galaxy

Galaxy, Build, pathogen surveillance system, automated, automation, SARS-CoV-2, genome surveillance, system Galaxy, Building, pathogen surveillance system, Automating, automation, workflows, command line Galaxy, Building, pathogen surveillance system, Removal,human reads, SARS-CoV-2, sequencing data Galaxy, Building, pathogen surveillance system, Upload data, ENA Galaxy, Building, pathogen surveillance system, usegalaxy, SARS-CoV-2, Bot Galaxy, Sequencing data analysis, spectrum, viral genomes Galaxy, Tuberculosis Sequence Analysis, Concepts, drug-resistance, prediction, mutation-based, clustering Galaxy, Tuberculosis Sequence Analysis, Identifying, tuberculosis transmission, links, SNPs, transmission clusters Galaxy, Tuberculosis Sequence Analysis, Implementation, NGS, TB- WHO, documents, considerations Galaxy, Tuberculosis Sequence Analysis, Tuberculosis, Variant Analysis …