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e-learning
NCBI BLAST+ against the MAdLand
• beginnerSequence analysis plants -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
slides
Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2
• beginnerUsing Galaxy and Managing your Data covid19 ncbi -
e-learning
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• beginnerUsing Galaxy and Managing your Data covid19 ncbi -
Bioinformatics: Gene-protein-structure-function
Expert systems Genequiz Protein family characterisation Protein family databases Protein sequence analysis Psi blast
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Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists
Gene lists Gene ontology
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Pathway and Network Analysis 2014 Module 3 - Gene Regulation Analysis
Pattern discovery Transcriptional regulation
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Pathway and Network Analysis 2014 Module 6 - Gene Function Prediction
Functional association networks Gene function prediction Genemania
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Introduction to Biopython
Bioinformatics Biopython Programming Python Python biologists
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Recorded webinar
Accessing sequence analysis tools via the new Job Dispatcher website
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Recorded webinar
A guide to Job Dispatcher sequence analysis tools and programmatic access
Sequence analysis
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Recorded webinar
Ensembl gene annotation for clinical genomics
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e-learning
Dataset construction for bacterial comparative genomics
• beginnerGenomics Microbiology Genome Annotation microgalaxy work-in-progress -
Access Bioinformatics Databases with Biopython
data-science life-sciences data-analysis health-informatics
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Similarity searching, multiple sequence alignment and protein families - undergraduate lab
Blast Hmmer Interpro Multiple sequence alignment Similarity searching
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Sequence comparison - undergraduate lab
Dotmatrix plots Scoring matrices Sequence alignment
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video
RDMbites | High-throughput sequencing data repositories
data management RDM
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scripts, examples
Using OpenCloning to automate the planning and documentation of cloning and genome engineering via python scripting
•• intermediateSynthetic biology Metabolic engineering Molecular biology Genetic engineering Genetic Engineering -
e-learning
Secondary metabolite discovery
• beginnerGenomics Genome Annotation -
e-learning
Genome annotation with Funannotate
•• intermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning, Video, Webinar
Using OpenCloning, an Open-Source web application to plan and document cloning and genome engineering
• beginnerGenetic engineering Molecular biology Synthetic biology Metabolic engineering Genetics web application Genetic Engineering genome engineering -
e-learning
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
•• intermediateGenetic variation Variant Analysis -
Plant Bioinformatics Capstone
physical-science-and-engineering life-sciences research-methods basic-science
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WORKSHOP: Retrieving nucleotide sequencing data from the European Nucleotide Archive
Bioinformatics Data retrieval Genomics FAIR
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Plant Bioinformatics
life-sciences physical-science-and-engineering health-informatics research-methods
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Submitting, Finding and Downloading Raw Sequencing Data with ENA
• beginnerFAIR data Metadata Data submission -
WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive
Bioinformatics Data submission FAIR Genomics eDNA metagenomics Genome assembly and annotation