Search results - TeSS (Training eSupport System)

Search results

Materials (28)

Showing 28 materials

View all results & filter

e-learning

NCBI BLAST+ against the MAdLand

• beginner
Sequence analysis plants
e-learning

Converting NCBI Data to the AnnData Format

• beginner
Single Cell data import data management
e-learning

Screening assembled genomes for contamination using NCBI FCS

• beginner
Sequence analysis
e-learning

From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

• beginner
Genetic variation Variant Analysis covid19 one-health virology
slides

Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2

• beginner
Using Galaxy and Managing your Data covid19 ncbi
e-learning

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

• beginner
Using Galaxy and Managing your Data covid19 ncbi
Bioinformatics: Gene-protein-structure-function

Expert systems Genequiz Protein family characterisation Protein family databases Protein sequence analysis Psi blast
Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists

Gene lists Gene ontology
Pathway and Network Analysis 2014 Module 3 - Gene Regulation Analysis

Pattern discovery Transcriptional regulation
Pathway and Network Analysis 2014 Module 6 - Gene Function Prediction

Functional association networks Gene function prediction Genemania
Introduction to Biopython

Bioinformatics Biopython Programming Python Python biologists
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Recorded webinar

Accessing sequence analysis tools via the new Job Dispatcher website
Recorded webinar

A guide to Job Dispatcher sequence analysis tools and programmatic access

Sequence analysis
Recorded webinar

Ensembl gene annotation for clinical genomics
Access Bioinformatics Databases with Biopython

data-science life-sciences data-analysis health-informatics
e-learning

Dataset construction for bacterial comparative genomics

• beginner
Genomics Microbiology Genome Annotation microgalaxy work-in-progress
Similarity searching, multiple sequence alignment and protein families - undergraduate lab

Blast Hmmer Interpro Multiple sequence alignment Similarity searching
Sequence comparison - undergraduate lab

Dotmatrix plots Scoring matrices Sequence alignment
video

RDMbites | High-throughput sequencing data repositories

data management RDM
e-learning

Genome assembly using PacBio data

•• intermediate
Sequence assembly Assembly assembly pacbio
e-learning

Secondary metabolite discovery

• beginner
Genome Annotation
e-learning

Genome annotation with Funannotate

•• intermediate
Genome Annotation eukaryote gmod jbrowse1
e-learning

Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates

•• intermediate
Genetic variation Variant Analysis
Plant Bioinformatics Capstone

physical-science-and-engineering life-sciences research-methods basic-science
Plant Bioinformatics

life-sciences physical-science-and-engineering health-informatics research-methods
Submitting, Finding and Downloading Raw Sequencing Data with ENA

• beginner
FAIR data Metadata Data submission
GTN Smörgåsbord 3: OneHealth - Building a pathogen surveillance system with Galaxy - An automated SARS-CoV-2 genome surveillance system built around Galaxy

Galaxy, Build, pathogen surveillance system, automated, automation, SARS-CoV-2, genome surveillance, system Galaxy, Building, pathogen surveillance system, Automating, automation, workflows, command line Galaxy, Building, pathogen surveillance system, Removal,human reads, SARS-CoV-2, sequencing data Galaxy, Building, pathogen surveillance system, Upload data, ENA Galaxy, Building, pathogen surveillance system, usegalaxy, SARS-CoV-2, Bot Galaxy, Sequencing data analysis, spectrum, viral genomes Galaxy, Tuberculosis Sequence Analysis, Concepts, drug-resistance, prediction, mutation-based, clustering Galaxy, Tuberculosis Sequence Analysis, Identifying, tuberculosis transmission, links, SNPs, transmission clusters Galaxy, Tuberculosis Sequence Analysis, Implementation, NGS, TB- WHO, documents, considerations Galaxy, Tuberculosis Sequence Analysis, Tuberculosis, Variant Analysis …