Training materials
Difficulty level: Intermediate
and Contributors: Alvaro Gonzalez or Chris Evelo or David Bouyssié or Gautier Sarah or Laura Leroi or Praveen Kumar or Ray Sajulga
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Documentation, Exercise, Handout, Scripts
IBIP19 - Integrative Biological Interpretation using Proteomics (2019)
•• intermediateProteomics