IFB French Institute of Bioinformatics

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Cloud
Variants: alignment and pre-treatment; GATK

Genomics
Getting started with Bioschemas

• beginner
Bioschemas Standards
Training materials

FAIR principles applied to bioinformatics

•• intermediate
FAIR Reproducible Science Open science Data analysis Data processing
Chip-seq: Pattern Analysis tutorial

Chip-seq NGS Pattern recognition
Training materials

Plant Phenotyping Data managment (MIAPPE)

• beginner
Phenomics Plant biology Data management Annotation Data formatting Plant Phenotyping Data-format data sharing
IFB Shiny training

•• intermediate
R-programming Reproducible Science
Webinar, Slides, Video

WheatIS DataDiscovery webinar

• beginner
Data management wheat information system data discovery
Variant Filtering

Genomics
Sequencing 6000 chloroplast genomes : the PhyloAlps project

metagenomics
Third generation sequencing : the revolution of long reads

Genomics
Prototyping the new PSICQUIC 2.0

biohackaton 2018
RGP finder: prediction of Genomic Islands

CDS Data visualization Genomics RGP
Chip-seq: Functional Annotation tutorial

Chip-seq Functional Annotation NGS
MG-RAST — experiences from processing a quarter million metagenomic data sets

metagenomics
bio.tools & EDAM drop-in hackathon & discussions

biohackaton 2018
200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics

metagenomics
Multiple Comparative Metagenomics using Multiset k-mer Counting

metagenomics
From Samples to Data : Assuring Downstream Analysis with Upstream Planning

metagenomics
Exploiting collisions between DNA molecules to characterize the genomic structures of complex communities

metagenomics
NGS data exploration with the MicroScope Platform

Genomics NGS RNA-seq SNP Transcriptomics
Gut metagenomics in cardiometabolic diseases

metagenomics
New perspectives on nitrite-oxidizing bacteria - linking genomes to physiology

metagenomics
ETBII 2023
Welcome message

biohackaton
Holistic metagenomics in marine communities

metagenomics
Assessing microbial biogeography by using a metagenomic approach

metagenomics
Slides

FAIR data - Module 1 (research data)

• beginner
metadata Data Life Cycle Reproducibility Data management plan
Slides

FAIR data - Module 2 (data life cycle)

• beginner
Data management Biology Bioinformatics Data handling Data preserving Data storage
Slides

FAIR data - Module 4 (share and publish data)

• beginner
Bioinformatics Biology Data management data sharing Data publishing legal framework data warehouse licensing data reuse

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Variants: alignment and pre-treatment; GATK

Getting started with Bioschemas

FAIR principles applied to bioinformatics

Chip-seq: Pattern Analysis tutorial

Plant Phenotyping Data managment (MIAPPE)

IFB Shiny training

WheatIS DataDiscovery webinar

Variant Filtering

Sequencing 6000 chloroplast genomes : the PhyloAlps project

Third generation sequencing : the revolution of long reads

Prototyping the new PSICQUIC 2.0

RGP finder: prediction of Genomic Islands

Chip-seq: Functional Annotation tutorial

MG-RAST — experiences from processing a quarter million metagenomic data sets

bio.tools & EDAM drop-in hackathon & discussions

200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics

Multiple Comparative Metagenomics using Multiset k-mer Counting

From Samples to Data : Assuring Downstream Analysis with Upstream Planning

Exploiting collisions between DNA molecules to characterize the genomic structures of complex communities

NGS data exploration with the MicroScope Platform

Gut metagenomics in cardiometabolic diseases

New perspectives on nitrite-oxidizing bacteria - linking genomes to physiology

ETBII 2023

Welcome message

Holistic metagenomics in marine communities

Assessing microbial biogeography by using a metagenomic approach

FAIR data - Module 1 (research data)

FAIR data - Module 2 (data life cycle)

FAIR data - Module 4 (share and publish data)

Cluster - 25 mars 2026

ETBII 2026 Ecole Thématique de Bioinformatique Intégrative / Integrative Bioinformatics Training School

RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - 30 mars 2026

HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ? - 7 avril 2026

Langage R : introduction

Initiation à Galaxy / Galaxy Initiation

Principes FAIR & Git Initiation

Linux - Initiation / Linux for Beginners

Linux Avancé / Advanced Linux

Utilisation du cluster - SLURM / Cluster usage - SLURM

Initiation à R / R Initiation

Manipulating & Visualizing Data with R

Analyses NGS avec R

Analyses Single Cell RNA-seq (ScRNA-seq) avec R

EB3I - Ecole de Bioinformatique niveau débutant 2026