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philbowsher/Workshop-R-Tensorflow-Scientific-Computing
Machine learning
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hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (short)' tutorial
metagenomics
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hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial
metagenomics
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hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
video
RDMbites | Package and environment management systems
data management RDM
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video
RDMbites | Analysis Organisation
data management RDM
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video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
data management RDM
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video
RDMbites | Making code available in a repository
data management RDM
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ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
Bioinformatics for Cancer Genomics 2018 Module 2-Ethics of Data Usage and Security
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ndphillips/ThePiratesGuideToR
R script R
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e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
Jaqpot Hackathon - Training materials
••• advancednanoinformatics toxicity prediction e-tools Modeling data FAIRness -
e-learning
Retrieve and list information on SARS-CoV-2 from ViralZone
• beginnerVirology Molecular biology SARS-CoV-2 -
hands-on tutorial
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
phlippe/uvadlc_notebooks
Machine learning
-
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases -
Documentation, Exercise, Handout, Scripts
ELB18F - Entry level Bioinformatics (First course in 2018)
• beginnerBioinformatics Sequencing -
Documentation, Exercise, Handout, Scripts
ELBS18 - Entry level Bioinformatics (Second course in 2018)
• beginnerBioinformatics Sequencing -
Documentation, Exercise, Handout, Scripts
ELB19F - Entry level Bioinformatics (First course in 2019)
• beginnerBioinformatics Sequencing -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Introduction to Viral Bioinformatics
• beginnergenes and genomes infectious disease medicine and health services and resources training -
Discover ViralZone
• beginnergenes and genomes infectious disease medicine and health services and resources training alan bridge group -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook