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philbowsher/Workshop-R-Tensorflow-Scientific-Computing
Machine learning
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hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (short)' tutorial
metagenomics
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hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial
metagenomics
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video
RDMbites | Package and environment management systems
data management RDM
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e-learning
Teaching experiences
• beginnerTeaching and Hosting Galaxy training -
video
RDMbites | Analysis Organisation
data management RDM
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e-learning
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ndphillips/ThePiratesGuideToR
R script R
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video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
data management RDM
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video
RDMbites | Making code available in a repository
data management RDM
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e-learning
Retrieve and list information on SARS-CoV-2 from ViralZone
• beginnerVirology Molecular biology SARS-CoV-2 -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data … -
phlippe/uvadlc_notebooks
Machine learning
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Bioinformatics for Cancer Genomics 2018 Module 2-Ethics of Data Usage and Security
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ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
kpatel427/YouTubeTutorials
RNA-Seq Single-cell sequencing Transcriptomics RNA-seq
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Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases -
Documentation, Exercise, Handout, Scripts
ELB18F - Entry level Bioinformatics (First course in 2018)
• beginnerBioinformatics Sequencing -
Documentation, Exercise, Handout, Scripts
ELBS18 - Entry level Bioinformatics (Second course in 2018)
• beginnerBioinformatics Sequencing -
Documentation, Exercise, Handout, Scripts
ELB19F - Entry level Bioinformatics (First course in 2019)
• beginnerBioinformatics Sequencing -
e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
Jaqpot Hackathon - Training materials
••• advancednanoinformatics toxicity prediction e-tools Modeling data FAIRness -
e-learning
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
e-learning, Documentation
FAIRplus fellowship programme
•• intermediateFAIR data FAIRness Data management FAIRplus life-sciences -
e-learning
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
e-learning
Contributing a New Feature to Galaxy Core
• beginnerSoftware engineering Development in Galaxy -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF …